Wall clock time and date at job start Mon Mar 30 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29573 * 1 3 3 Si 1.86800 * 119.99923 * 2 1 4 4 H 1.48505 * 109.47218 * 269.99980 * 3 2 1 5 5 H 1.48504 * 109.47195 * 30.00279 * 3 2 1 6 6 H 1.48498 * 109.46991 * 150.00178 * 3 2 1 7 7 C 1.46388 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99763 * 190.62637 * 7 2 1 9 9 C 1.41160 * 120.00479 * 10.62024 * 7 2 1 10 10 C 1.41233 * 121.06561 * 31.32632 * 9 7 2 11 11 C 1.38116 * 118.80321 * 179.97438 * 10 9 7 12 12 Br 1.89100 * 119.48663 * 179.97438 * 11 10 9 13 13 N 1.31898 * 121.02004 * 359.72174 * 11 10 9 14 14 C 1.31817 * 122.41659 * 0.57179 * 13 11 10 15 15 C 1.37994 * 121.05904 * 359.43084 * 14 13 11 16 16 N 1.48027 * 120.58023 * 180.25283 * 15 14 13 17 17 O 1.31703 * 119.99820 * 6.12071 * 16 15 14 18 18 O 1.31697 * 120.00030 * 186.11771 * 16 15 14 19 19 H 0.97002 * 120.00148 * 359.97438 * 1 2 3 20 20 H 1.07999 * 120.59604 * 359.97438 * 10 9 7 21 21 H 1.07999 * 119.46623 * 179.70378 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2957 0.0000 0.0000 3 14 2.2297 1.6177 0.0000 4 1 2.4772 2.0465 -1.4001 5 1 1.4272 2.6527 0.7001 6 1 3.5273 1.4402 0.7000 7 6 2.0277 -1.2678 -0.0006 8 1 3.0938 -1.2758 0.1719 9 6 1.3401 -2.4797 -0.2264 10 6 0.1982 -2.5261 -1.0562 11 6 -0.4383 -3.7372 -1.2453 12 35 -1.9694 -3.8214 -2.3518 13 7 0.0083 -4.8369 -0.6699 14 6 1.0659 -4.8433 0.1168 15 6 1.7722 -3.6851 0.3696 16 7 2.9618 -3.7055 1.2504 17 8 3.4261 -4.8517 1.7034 18 8 3.5558 -2.5776 1.5810 19 1 -0.4850 0.8401 0.0004 20 1 -0.1707 -1.6307 -1.5342 21 1 1.3874 -5.7708 0.5673 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306937121.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:53 Heat of formation + Delta-G solvation = 19.337744 kcal Electronic energy + Delta-G solvation = -13186.143954 eV Core-core repulsion = 10497.345960 eV Total energy + Delta-G solvation = -2688.797994 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.04543 -38.79958 -36.68216 -34.76174 -33.66435 -33.11642 -30.88344 -28.71286 -26.76215 -24.17550 -22.99255 -20.30724 -18.80950 -18.60801 -17.76698 -16.74950 -16.59783 -16.42796 -15.25140 -14.91534 -14.70726 -13.96783 -13.65599 -13.14303 -13.04090 -12.10306 -12.01591 -11.72160 -11.67580 -11.44536 -11.39464 -11.32736 -10.71540 -10.55201 -10.09578 -9.47646 -7.31206 -1.26751 0.35746 0.37968 0.46591 1.01818 1.28727 1.41210 1.51771 2.04320 2.14578 2.80576 3.55104 3.93769 3.99850 4.32903 4.39580 4.68759 4.79799 5.17903 5.32529 5.71896 5.83052 5.92560 6.50407 6.81461 7.41763 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.009411 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.001869 B = 2974.576969 C = 4466.726019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.020 3.980 3 Si 1.007 2.993 4 H -0.237 1.237 5 H -0.244 1.244 6 H -0.257 1.257 7 C -0.276 4.276 8 H 0.128 0.872 9 C 0.045 3.955 10 C -0.113 4.113 11 C 0.084 3.916 12 Br -0.004 7.004 13 N -0.524 5.524 14 C 0.213 3.787 15 C -0.158 4.158 16 N 0.045 4.955 17 O -0.373 6.373 18 O -0.313 6.313 19 H 0.333 0.667 20 H 0.156 0.844 21 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.742 5.317 -6.880 11.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.212 4.212 3 Si 0.822 3.178 4 H -0.160 1.160 5 H -0.167 1.167 6 H -0.181 1.181 7 C -0.304 4.304 8 H 0.145 0.855 9 C 0.037 3.963 10 C -0.137 4.137 11 C -0.114 4.114 12 Br 0.080 6.920 13 N -0.244 5.244 14 C 0.039 3.961 15 C -0.267 4.267 16 N 0.453 4.547 17 O -0.511 6.511 18 O -0.464 6.464 19 H 0.148 0.852 20 H 0.174 0.826 21 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.235 4.554 -7.604 12.098 hybrid contribution 1.333 0.867 0.884 1.820 sum -6.901 5.422 -6.720 11.053 Atomic orbital electron populations 1.68988 1.10159 1.35922 1.17470 1.28923 0.95960 1.05363 0.91002 0.84780 0.79249 0.72195 0.81557 1.16015 1.16725 1.18066 1.23071 0.98282 0.89612 1.19422 0.85486 1.17672 0.93602 0.91714 0.93350 1.22342 0.95315 0.97264 0.98799 1.22668 0.96643 0.91670 1.00402 1.96572 1.33186 1.99082 1.63182 1.67416 1.14609 1.29075 1.13269 1.22256 0.87585 0.96184 0.90062 1.21505 0.95656 0.99814 1.09756 1.49707 1.02594 1.00990 1.01373 1.96062 1.73377 1.14946 1.66711 1.96007 1.63240 1.17021 1.70157 0.85236 0.82638 0.81044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -25.39 11.25 23.18 0.26 -25.13 14 2 C 0.02 0.72 5.43 87.15 0.47 1.20 14 3 Si 1.01 26.92 29.65 68.60 2.03 28.95 14 4 H -0.24 -5.76 7.11 99.48 0.71 -5.06 14 5 H -0.24 -5.82 7.11 99.48 0.71 -5.11 14 6 H -0.26 -7.60 7.11 99.48 0.71 -6.89 14 7 C -0.28 -12.23 8.12 25.11 0.20 -12.02 14 8 H 0.13 5.92 5.81 -2.91 -0.02 5.91 14 9 C 0.04 2.11 5.57 -21.09 -0.12 1.99 14 10 C -0.11 -4.76 8.55 22.98 0.20 -4.57 14 11 C 0.08 3.45 7.16 84.65 0.61 4.06 14 12 Br 0.00 -0.14 33.86 -20.37 -0.69 -0.83 14 13 N -0.52 -22.67 10.27 -191.14 -1.96 -24.63 14 14 C 0.21 9.60 10.73 84.64 0.91 10.51 14 15 C -0.16 -7.85 6.97 37.05 0.26 -7.59 14 16 N 0.05 2.46 4.99 -44.84 -0.22 2.24 14 17 O -0.37 -20.75 19.21 3.51 0.07 -20.68 14 18 O -0.31 -17.36 16.37 3.52 0.06 -17.30 14 19 H 0.33 9.75 8.27 -92.71 -0.77 8.99 14 20 H 0.16 6.13 6.59 -2.91 -0.02 6.12 14 21 H 0.17 7.13 7.60 -2.91 -0.02 7.11 14 Total: -1.00 -56.12 227.71 3.37 -52.75 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.30 Total: 11.06 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 2.53 Total: -6.42 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -1.93 Total: -47.53 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: 0.12 Total: -37.99 kcal Atomic # 14 Polarization: 26.92 SS G_CDS: 2.03 Total: 28.95 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -0.69 Total: -0.83 kcal Total: -56.12 3.37 -52.75 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306937121.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.087 kcal (2) G-P(sol) polarization free energy of solvation -56.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds