Wall clock time and date at job start Mon Mar 30 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29487 * 1 3 3 Si 1.86800 * 120.00419 * 2 1 4 4 H 1.48498 * 109.46928 * 274.14760 * 3 2 1 5 5 H 1.48497 * 109.46806 * 34.14465 * 3 2 1 6 6 H 1.48498 * 109.47181 * 154.14496 * 3 2 1 7 7 C 1.46581 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99960 * 341.70387 * 7 2 1 9 9 C 1.40208 * 119.99736 * 161.71121 * 7 2 1 10 10 C 1.41662 * 120.71911 * 334.66445 * 9 7 2 11 11 C 1.36800 * 118.28045 * 179.97438 * 10 9 7 12 12 C 1.38827 * 119.64367 * 359.97438 * 11 10 9 13 13 N 1.48019 * 119.25759 * 179.97438 * 12 11 10 14 14 O 1.31703 * 119.99993 * 359.97438 * 13 12 11 15 15 O 1.31698 * 120.00254 * 180.02562 * 13 12 11 16 16 N 1.32101 * 121.48102 * 359.74942 * 12 11 10 17 17 C 1.31583 * 121.87328 * 0.52584 * 16 12 11 18 18 Br 1.89101 * 119.92362 * 179.75612 * 17 16 12 19 19 H 0.97005 * 119.99497 * 0.02562 * 1 2 3 20 20 H 1.08005 * 120.85884 * 359.97438 * 10 9 7 21 21 H 1.07993 * 120.18033 * 179.97438 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 2.3888 2.0969 -1.3964 5 1 1.4730 2.6257 0.7858 6 1 3.5676 1.4163 0.6106 7 6 2.0277 -1.2695 0.0006 8 1 1.5286 -2.1809 0.2946 9 6 3.3766 -1.3004 -0.3805 10 6 3.9072 -0.3115 -1.2451 11 6 5.2302 -0.3894 -1.5842 12 6 6.0091 -1.4214 -1.0786 13 7 7.4395 -1.4977 -1.4515 14 8 7.9597 -0.5930 -2.2549 15 8 8.1917 -2.4708 -0.9808 16 7 5.5033 -2.3343 -0.2687 17 6 4.2379 -2.3191 0.0915 18 35 3.5703 -3.6577 1.2484 19 1 -0.4850 0.8401 -0.0004 20 1 3.2833 0.4832 -1.6267 21 1 5.6665 0.3480 -2.2416 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306937330.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:22 Heat of formation + Delta-G solvation = 39.807368 kcal Electronic energy + Delta-G solvation = -13030.247616 eV Core-core repulsion = 10342.337251 eV Total energy + Delta-G solvation = -2687.910365 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.50233 -37.28910 -34.98720 -33.26850 -32.41144 -32.00120 -29.44914 -27.55486 -24.39262 -22.67888 -21.66310 -18.69674 -17.84946 -17.12112 -16.19704 -15.58718 -15.01546 -14.37898 -13.89050 -13.66072 -13.32270 -12.90054 -12.35783 -11.75194 -11.28444 -10.83810 -10.39385 -10.30738 -10.23702 -10.03587 -9.72180 -9.66671 -9.34049 -9.00296 -8.59027 -8.22671 -5.69746 0.41364 1.75152 1.97949 2.02950 2.41568 2.45767 2.57503 2.63343 3.15623 3.48214 4.38980 5.16373 5.33018 5.55218 5.59974 5.87146 6.22865 6.46130 6.63631 6.83917 7.02175 7.34943 7.41905 7.78885 8.48275 8.63106 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.017168 B = 0.011176 C = 0.007005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.540939 B = 2504.808562 C = 3996.365695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.061 3.939 3 Si 0.924 3.076 4 H -0.250 1.250 5 H -0.269 1.269 6 H -0.231 1.231 7 C -0.282 4.282 8 H 0.129 0.871 9 C 0.029 3.971 10 C -0.204 4.204 11 C -0.037 4.037 12 C 0.035 3.965 13 N 0.039 4.961 14 O -0.276 6.276 15 O -0.237 6.237 16 N -0.374 5.374 17 C 0.071 3.929 18 Br -0.023 7.023 19 H 0.316 0.684 20 H 0.132 0.868 21 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.053 1.456 2.578 6.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.308 5.308 2 C -0.176 4.176 3 Si 0.746 3.254 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.153 1.153 7 C -0.306 4.306 8 H 0.146 0.854 9 C 0.021 3.979 10 C -0.228 4.228 11 C -0.060 4.060 12 C -0.185 4.185 13 N 0.485 4.515 14 O -0.439 6.439 15 O -0.414 6.414 16 N -0.086 5.086 17 C -0.168 4.168 18 Br 0.060 6.940 19 H 0.130 0.870 20 H 0.150 0.850 21 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.246 0.536 3.265 7.068 hybrid contribution 0.203 1.423 -0.732 1.613 sum -6.043 1.960 2.534 6.839 Atomic orbital electron populations 1.68911 1.09451 1.34213 1.18245 1.28223 0.95174 1.03525 0.90706 0.86034 0.81902 0.76587 0.80879 1.17459 1.19491 1.15303 1.21868 0.91630 0.96186 1.20946 0.85362 1.18238 0.93697 0.92415 0.93594 1.20968 0.94639 1.03004 1.04202 1.20725 0.93286 0.95202 0.96739 1.19289 0.80988 1.03153 1.15028 1.49893 1.03294 0.99997 0.98317 1.96140 1.77675 1.34751 1.35369 1.96166 1.60328 1.25797 1.59120 1.65245 1.14083 1.22205 1.07041 1.22264 0.89143 0.99470 1.05893 1.96525 1.84981 1.50795 1.61670 0.87029 0.85039 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -12.20 13.89 55.99 0.78 -11.42 14 2 C 0.06 1.09 5.61 -15.18 -0.09 1.00 14 3 Si 0.92 14.55 24.57 -169.99 -4.18 10.38 14 4 H -0.25 -3.73 6.69 56.52 0.38 -3.35 14 5 H -0.27 -3.97 7.11 56.52 0.40 -3.57 14 6 H -0.23 -3.99 6.82 56.52 0.39 -3.61 14 7 C -0.28 -5.48 9.29 -35.48 -0.33 -5.81 14 8 H 0.13 2.51 7.07 -52.49 -0.37 2.14 14 9 C 0.03 0.59 5.29 -106.61 -0.56 0.03 14 10 C -0.20 -4.05 7.36 -38.80 -0.29 -4.34 14 11 C -0.04 -0.79 9.53 -39.88 -0.38 -1.17 14 12 C 0.03 0.85 7.83 -145.77 -1.14 -0.29 14 13 N 0.04 1.01 4.98 33.03 0.16 1.17 14 14 O -0.28 -6.91 19.09 -31.57 -0.60 -7.52 14 15 O -0.24 -6.34 19.74 -31.57 -0.62 -6.96 14 16 N -0.37 -9.06 10.00 -7.78 -0.08 -9.13 14 17 C 0.07 1.55 7.26 -16.41 -0.12 1.43 14 18 Br -0.02 -0.42 32.32 -68.01 -2.20 -2.62 14 19 H 0.32 4.72 8.27 -40.82 -0.34 4.39 14 20 H 0.13 2.30 4.31 -52.48 -0.23 2.08 14 21 H 0.14 2.59 7.54 -52.49 -0.40 2.20 14 LS Contribution 224.57 15.07 3.38 3.38 Total: -1.00 -25.16 224.57 -6.42 -31.59 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -0.17 Total: 0.28 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.90 Total: -9.15 kcal Atomic # 7 Polarization: -20.24 SS G_CDS: 0.86 Total: -19.38 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -1.23 Total: -14.47 kcal Atomic # 14 Polarization: 14.55 SS G_CDS: -4.18 Total: 10.38 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.20 Total: -2.62 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -25.16 -6.42 -31.59 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306937330.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.393 kcal (2) G-P(sol) polarization free energy of solvation -25.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds