Wall clock time and date at job start Mon Mar 30 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29487 * 1 3 3 Si 1.86800 * 120.00419 * 2 1 4 4 H 1.48498 * 109.46928 * 274.14760 * 3 2 1 5 5 H 1.48497 * 109.46806 * 34.14465 * 3 2 1 6 6 H 1.48498 * 109.47181 * 154.14496 * 3 2 1 7 7 C 1.46581 * 119.99568 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99960 * 341.70387 * 7 2 1 9 9 C 1.40208 * 119.99736 * 161.71121 * 7 2 1 10 10 C 1.41662 * 120.71911 * 334.66445 * 9 7 2 11 11 C 1.36800 * 118.28045 * 179.97438 * 10 9 7 12 12 C 1.38827 * 119.64367 * 359.97438 * 11 10 9 13 13 N 1.48019 * 119.25759 * 179.97438 * 12 11 10 14 14 O 1.31703 * 119.99993 * 359.97438 * 13 12 11 15 15 O 1.31698 * 120.00254 * 180.02562 * 13 12 11 16 16 N 1.32101 * 121.48102 * 359.74942 * 12 11 10 17 17 C 1.31583 * 121.87328 * 0.52584 * 16 12 11 18 18 Br 1.89101 * 119.92362 * 179.75612 * 17 16 12 19 19 H 0.97005 * 119.99497 * 0.02562 * 1 2 3 20 20 H 1.08005 * 120.85884 * 359.97438 * 10 9 7 21 21 H 1.07993 * 120.18033 * 179.97438 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 2.3888 2.0969 -1.3964 5 1 1.4730 2.6257 0.7858 6 1 3.5676 1.4163 0.6106 7 6 2.0277 -1.2695 0.0006 8 1 1.5286 -2.1809 0.2946 9 6 3.3766 -1.3004 -0.3805 10 6 3.9072 -0.3115 -1.2451 11 6 5.2302 -0.3894 -1.5842 12 6 6.0091 -1.4214 -1.0786 13 7 7.4395 -1.4977 -1.4515 14 8 7.9597 -0.5930 -2.2549 15 8 8.1917 -2.4708 -0.9808 16 7 5.5033 -2.3343 -0.2687 17 6 4.2379 -2.3191 0.0915 18 35 3.5703 -3.6577 1.2484 19 1 -0.4850 0.8401 -0.0004 20 1 3.2833 0.4832 -1.6267 21 1 5.6665 0.3480 -2.2416 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306937330.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:21 Heat of formation + Delta-G solvation = 24.942634 kcal Electronic energy + Delta-G solvation = -13030.892199 eV Core-core repulsion = 10342.337251 eV Total energy + Delta-G solvation = -2688.554948 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.16243 -39.00324 -36.58804 -35.00953 -34.05836 -33.65408 -31.09247 -29.27307 -26.07958 -24.30690 -23.32935 -20.29891 -19.53520 -18.86686 -17.69283 -17.23977 -16.77073 -15.96335 -15.45473 -15.15812 -14.94607 -14.42925 -13.87990 -13.18782 -12.87957 -12.24744 -12.03923 -11.88394 -11.82134 -11.69870 -11.56505 -11.29424 -10.94708 -10.64157 -10.23598 -9.72218 -7.36331 -1.42926 0.15411 0.31735 0.43344 0.77477 1.12095 1.28652 1.41479 1.87928 2.02282 2.72807 3.53592 3.74405 3.91739 4.05207 4.30608 4.63094 4.86777 5.02067 5.19840 5.31521 5.69844 5.75943 6.03818 6.79229 7.18326 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.017168 B = 0.011176 C = 0.007005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.540939 B = 2504.808562 C = 3996.365695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.676 5.676 2 C 0.037 3.963 3 Si 0.954 3.046 4 H -0.228 1.228 5 H -0.245 1.245 6 H -0.256 1.256 7 C -0.213 4.213 8 H 0.133 0.867 9 C -0.017 4.017 10 C -0.181 4.181 11 C -0.054 4.054 12 C 0.014 3.986 13 N 0.046 4.954 14 O -0.313 6.313 15 O -0.333 6.333 16 N -0.412 5.412 17 C 0.087 3.913 18 Br 0.006 6.994 19 H 0.339 0.661 20 H 0.162 0.838 21 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.908 3.129 3.288 11.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.293 5.293 2 C -0.202 4.202 3 Si 0.773 3.227 4 H -0.152 1.152 5 H -0.170 1.170 6 H -0.180 1.180 7 C -0.239 4.239 8 H 0.151 0.849 9 C -0.026 4.026 10 C -0.205 4.205 11 C -0.076 4.076 12 C -0.207 4.207 13 N 0.466 4.534 14 O -0.466 6.466 15 O -0.485 6.485 16 N -0.124 5.124 17 C -0.157 4.157 18 Br 0.089 6.911 19 H 0.155 0.845 20 H 0.179 0.821 21 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.861 2.149 3.931 11.748 hybrid contribution 0.618 0.972 -0.666 1.331 sum -10.243 3.122 3.264 11.194 Atomic orbital electron populations 1.68814 1.09692 1.36682 1.14127 1.28599 0.95763 1.04188 0.91610 0.85597 0.80066 0.74779 0.82296 1.15213 1.16958 1.17981 1.22407 0.90862 0.97211 1.13387 0.84924 1.18385 0.94247 0.93614 0.96317 1.21264 0.94111 1.02527 1.02585 1.20858 0.93634 0.95216 0.97887 1.19645 0.80467 1.04448 1.16188 1.49984 1.03979 1.00164 0.99294 1.96054 1.78311 1.35396 1.36881 1.96112 1.61469 1.28120 1.62842 1.65267 1.15191 1.23336 1.08652 1.22929 0.88876 0.99400 1.04460 1.96544 1.84110 1.49827 1.60603 0.84494 0.82145 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -19.36 13.89 23.22 0.32 -19.04 14 2 C 0.04 1.09 5.61 87.22 0.49 1.58 14 3 Si 0.95 24.49 24.57 68.60 1.69 26.18 14 4 H -0.23 -5.27 6.69 99.48 0.67 -4.61 14 5 H -0.25 -5.55 7.11 99.48 0.71 -4.84 14 6 H -0.26 -7.89 6.82 99.48 0.68 -7.21 14 7 C -0.21 -7.23 9.29 24.93 0.23 -7.00 14 8 H 0.13 4.47 7.07 -2.91 -0.02 4.45 14 9 C -0.02 -0.67 5.29 -21.15 -0.11 -0.78 14 10 C -0.18 -6.68 7.36 22.78 0.17 -6.52 14 11 C -0.05 -2.27 9.53 22.07 0.21 -2.06 14 12 C 0.01 0.71 7.83 129.72 1.02 1.72 14 13 N 0.05 2.59 4.98 -49.42 -0.25 2.34 14 14 O -0.31 -16.96 19.09 3.51 0.07 -16.89 14 15 O -0.33 -19.81 19.74 3.52 0.07 -19.74 14 16 N -0.41 -20.45 10.00 -178.54 -1.79 -22.23 14 17 C 0.09 3.69 7.26 85.54 0.62 4.32 14 18 Br 0.01 0.22 32.32 -20.37 -0.66 -0.44 14 19 H 0.34 7.77 8.27 -92.70 -0.77 7.00 14 20 H 0.16 4.84 4.31 -2.91 -0.01 4.83 14 21 H 0.15 5.75 7.54 -2.91 -0.02 5.73 14 Total: -1.00 -56.51 224.57 3.31 -53.21 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.23 Total: 5.35 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 2.62 Total: -8.74 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -1.71 Total: -38.93 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: 0.14 Total: -36.63 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: 1.69 Total: 26.18 kcal Atomic # 35 Polarization: 0.22 SS G_CDS: -0.66 Total: -0.44 kcal Total: -56.51 3.31 -53.21 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306937330.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.149 kcal (2) G-P(sol) polarization free energy of solvation -56.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds