Wall clock time and date at job start Mon Mar 30 2020 06:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29590 * 1 3 3 Si 1.86796 * 119.99920 * 2 1 4 4 H 1.48505 * 109.47022 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46993 * 119.99735 * 3 2 1 6 6 H 1.48503 * 109.47264 * 239.99828 * 3 2 1 7 7 C 1.46381 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99897 * 3.68835 * 7 2 1 9 9 C 1.40878 * 119.99612 * 183.68610 * 7 2 1 10 10 C 1.40940 * 119.80739 * 186.54957 * 9 7 2 11 11 C 1.38308 * 118.98296 * 180.02562 * 10 9 7 12 12 N 1.48009 * 120.72645 * 179.97438 * 11 10 9 13 13 O 1.31709 * 119.99974 * 359.97438 * 12 11 10 14 14 O 1.31697 * 120.00416 * 180.02562 * 12 11 10 15 15 C 1.38884 * 118.54887 * 359.97438 * 11 10 9 16 16 Br 1.89101 * 120.24682 * 180.02562 * 15 11 10 17 17 C 1.39704 * 119.50894 * 0.02562 * 15 11 10 18 18 N 1.30906 * 121.00517 * 359.70723 * 17 15 11 19 19 H 0.97000 * 119.99516 * 174.87642 * 1 2 3 20 20 H 1.07992 * 120.50401 * 0.02827 * 10 9 7 21 21 H 1.08006 * 119.49583 * 180.02562 * 17 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2959 0.0000 0.0000 3 14 2.2299 1.6177 0.0000 4 1 1.2648 2.7464 0.0006 5 1 3.0835 1.6964 1.2125 6 1 3.0837 1.6964 -1.2125 7 6 2.0278 -1.2677 -0.0006 8 1 1.4894 -2.2020 -0.0612 9 6 3.4344 -1.2690 0.0779 10 6 4.1428 -2.4793 -0.0619 11 6 5.5234 -2.4610 0.0185 12 7 6.3058 -3.7094 -0.1222 13 8 5.6877 -4.8545 -0.3259 14 8 7.6199 -3.6756 -0.0427 15 6 6.1595 -1.2454 0.2342 16 35 8.0452 -1.1647 0.3516 17 6 5.3961 -0.0826 0.3639 18 7 4.0903 -0.1204 0.2795 19 1 -0.4849 -0.8367 -0.0750 20 1 3.6156 -3.4069 -0.2293 21 1 5.8910 0.8627 0.5312 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307001493.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:51 Heat of formation + Delta-G solvation = 45.394710 kcal Electronic energy + Delta-G solvation = -13101.165196 eV Core-core repulsion = 10413.497117 eV Total energy + Delta-G solvation = -2687.668079 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.62182 -37.96324 -34.43922 -33.87836 -32.45667 -31.60847 -29.60001 -26.40182 -25.60014 -22.61366 -21.44104 -19.40892 -17.65555 -17.44824 -15.77686 -15.47291 -15.22262 -14.72598 -13.69889 -13.42780 -13.26570 -12.74868 -11.53422 -11.45223 -11.42111 -10.88692 -10.66675 -10.50582 -10.46303 -10.10337 -9.89538 -9.48895 -8.90719 -8.53916 -8.37001 -8.00865 -5.53027 -0.09656 1.67519 1.72894 1.97443 2.36395 3.13696 3.19669 3.55369 3.91162 3.93117 4.67098 4.98881 5.32990 5.38918 5.71110 6.00484 6.21809 6.30849 6.54999 6.67138 7.19274 7.32727 7.38719 7.69856 8.67487 9.16461 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.030683 B = 0.008104 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.341670 B = 3454.102063 C = 4347.968738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.038 3.962 3 Si 1.144 2.856 4 H -0.316 1.316 5 H -0.266 1.266 6 H -0.280 1.280 7 C -0.402 4.402 8 H 0.100 0.900 9 C 0.222 3.778 10 C -0.171 4.171 11 C 0.105 3.895 12 N -0.020 5.020 13 O -0.206 6.206 14 O -0.145 6.145 15 C -0.290 4.290 16 Br -0.039 7.039 17 C 0.220 3.780 18 N -0.554 5.554 19 H 0.298 0.702 20 H 0.142 0.858 21 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.629 2.132 0.509 6.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.192 4.192 3 Si 0.973 3.027 4 H -0.247 1.247 5 H -0.192 1.192 6 H -0.207 1.207 7 C -0.432 4.432 8 H 0.118 0.882 9 C 0.104 3.896 10 C -0.197 4.197 11 C 0.014 3.986 12 N 0.458 4.542 13 O -0.392 6.392 14 O -0.346 6.346 15 C -0.376 4.376 16 Br 0.045 6.955 17 C 0.050 3.950 18 N -0.272 5.272 19 H 0.111 0.889 20 H 0.159 0.841 21 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.008 4.838 0.731 7.749 hybrid contribution 0.323 -3.243 -0.229 3.267 sum 6.332 1.595 0.502 6.549 Atomic orbital electron populations 1.70196 1.08694 1.34328 1.22115 1.29649 0.94882 1.06219 0.88484 0.82122 0.71655 0.68465 0.80442 1.24704 1.19210 1.20677 1.22579 0.90026 0.96655 1.33899 0.88238 1.18398 0.93945 0.85536 0.91706 1.21927 0.89782 1.01262 1.06708 1.20067 0.90687 0.80853 1.06972 1.50714 1.03228 1.04088 0.96180 1.96213 1.72112 1.15411 1.55441 1.96316 0.89597 1.95059 1.53674 1.21628 0.91469 0.94318 1.30191 1.96522 1.02652 1.98664 1.97709 1.22360 0.88818 0.95016 0.88781 1.66895 1.08398 1.27572 1.24359 0.88911 0.84057 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -16.21 13.58 55.98 0.76 -15.45 14 2 C 0.04 0.85 5.69 -15.22 -0.09 0.76 14 3 Si 1.14 22.93 25.77 -169.99 -4.38 18.55 14 4 H -0.32 -6.25 7.11 56.52 0.40 -5.85 14 5 H -0.27 -5.28 6.70 56.52 0.38 -4.90 14 6 H -0.28 -5.63 7.11 56.52 0.40 -5.23 14 7 C -0.40 -8.97 9.86 -35.31 -0.35 -9.32 14 8 H 0.10 2.15 8.06 -52.49 -0.42 1.73 14 9 C 0.22 4.95 6.42 -84.99 -0.55 4.40 14 10 C -0.17 -3.68 9.39 -38.53 -0.36 -4.04 14 11 C 0.10 2.28 6.93 -79.69 -0.55 1.73 14 12 N -0.02 -0.45 4.98 34.09 0.17 -0.28 14 13 O -0.21 -4.59 19.25 -31.57 -0.61 -5.20 14 14 O -0.14 -3.12 16.25 -31.57 -0.51 -3.63 14 15 C -0.29 -5.89 6.29 -38.80 -0.24 -6.13 14 16 Br -0.04 -0.69 30.32 -68.01 -2.06 -2.75 14 17 C 0.22 4.30 10.97 -17.40 -0.19 4.11 14 18 N -0.55 -12.00 4.77 -11.01 -0.05 -12.05 14 19 H 0.30 6.13 8.74 -40.82 -0.36 5.78 14 20 H 0.14 2.89 7.67 -52.49 -0.40 2.49 14 21 H 0.16 2.52 8.06 -52.48 -0.42 2.10 14 LS Contribution 223.93 15.07 3.37 3.37 Total: -1.00 -23.75 223.93 -6.06 -29.82 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: -0.42 Total: -3.89 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.33 Total: -8.49 kcal Atomic # 7 Polarization: -28.66 SS G_CDS: 0.88 Total: -27.78 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -1.12 Total: -8.83 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.38 Total: 18.55 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.06 Total: -2.75 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -23.75 -6.06 -29.82 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307001493.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.210 kcal (2) G-P(sol) polarization free energy of solvation -23.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds