Wall clock time and date at job start Mon Mar 30 2020 06:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29590 * 1 3 3 Si 1.86796 * 119.99920 * 2 1 4 4 H 1.48505 * 109.47022 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46993 * 119.99735 * 3 2 1 6 6 H 1.48503 * 109.47264 * 239.99828 * 3 2 1 7 7 C 1.46381 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99897 * 3.68835 * 7 2 1 9 9 C 1.40878 * 119.99612 * 183.68610 * 7 2 1 10 10 C 1.40940 * 119.80739 * 186.54957 * 9 7 2 11 11 C 1.38308 * 118.98296 * 180.02562 * 10 9 7 12 12 N 1.48009 * 120.72645 * 179.97438 * 11 10 9 13 13 O 1.31709 * 119.99974 * 359.97438 * 12 11 10 14 14 O 1.31697 * 120.00416 * 180.02562 * 12 11 10 15 15 C 1.38884 * 118.54887 * 359.97438 * 11 10 9 16 16 Br 1.89101 * 120.24682 * 180.02562 * 15 11 10 17 17 C 1.39704 * 119.50894 * 0.02562 * 15 11 10 18 18 N 1.30906 * 121.00517 * 359.70723 * 17 15 11 19 19 H 0.97000 * 119.99516 * 174.87642 * 1 2 3 20 20 H 1.07992 * 120.50401 * 0.02827 * 10 9 7 21 21 H 1.08006 * 119.49583 * 180.02562 * 17 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2959 0.0000 0.0000 3 14 2.2299 1.6177 0.0000 4 1 1.2648 2.7464 0.0006 5 1 3.0835 1.6964 1.2125 6 1 3.0837 1.6964 -1.2125 7 6 2.0278 -1.2677 -0.0006 8 1 1.4894 -2.2020 -0.0612 9 6 3.4344 -1.2690 0.0779 10 6 4.1428 -2.4793 -0.0619 11 6 5.5234 -2.4610 0.0185 12 7 6.3058 -3.7094 -0.1222 13 8 5.6877 -4.8545 -0.3259 14 8 7.6199 -3.6756 -0.0427 15 6 6.1595 -1.2454 0.2342 16 35 8.0452 -1.1647 0.3516 17 6 5.3961 -0.0826 0.3639 18 7 4.0903 -0.1204 0.2795 19 1 -0.4849 -0.8367 -0.0750 20 1 3.6156 -3.4069 -0.2293 21 1 5.8910 0.8627 0.5312 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307001493.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:51 Heat of formation + Delta-G solvation = 33.457712 kcal Electronic energy + Delta-G solvation = -13101.682824 eV Core-core repulsion = 10413.497117 eV Total energy + Delta-G solvation = -2688.185706 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.29429 -39.68519 -36.10375 -35.61864 -34.12493 -33.24502 -31.19654 -28.11250 -27.25708 -24.25393 -23.12759 -21.10138 -19.39721 -19.12597 -17.44974 -17.21509 -16.85465 -16.33672 -15.32102 -15.05689 -14.91967 -14.38711 -13.14578 -13.11675 -13.06589 -12.53272 -12.32683 -12.11966 -12.10588 -11.81793 -11.54359 -11.12233 -10.48183 -10.15441 -9.99772 -9.68308 -7.21943 -1.81639 -0.02890 0.07983 0.29141 0.76332 1.52642 1.59480 1.98372 2.28840 2.34596 2.99216 3.43975 3.66853 3.71853 4.07987 4.32934 4.58113 4.69156 4.88840 5.02205 5.50553 5.64346 5.68337 6.03032 7.01907 7.49855 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.030683 B = 0.008104 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.341670 B = 3454.102063 C = 4347.968738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.021 3.979 3 Si 1.167 2.833 4 H -0.313 1.313 5 H -0.261 1.261 6 H -0.280 1.280 7 C -0.425 4.425 8 H 0.095 0.905 9 C 0.219 3.781 10 C -0.185 4.185 11 C 0.094 3.906 12 N -0.023 5.023 13 O -0.229 6.229 14 O -0.127 6.127 15 C -0.290 4.290 16 Br -0.010 7.010 17 C 0.221 3.779 18 N -0.563 5.563 19 H 0.301 0.699 20 H 0.143 0.857 21 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.027 3.101 0.711 8.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.207 4.207 3 Si 0.994 3.006 4 H -0.244 1.244 5 H -0.187 1.187 6 H -0.207 1.207 7 C -0.455 4.455 8 H 0.113 0.887 9 C 0.101 3.899 10 C -0.211 4.211 11 C 0.003 3.997 12 N 0.454 4.546 13 O -0.408 6.408 14 O -0.334 6.334 15 C -0.375 4.375 16 Br 0.074 6.926 17 C 0.052 3.948 18 N -0.282 5.282 19 H 0.114 0.886 20 H 0.161 0.839 21 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 7.355 5.759 0.927 9.387 hybrid contribution 0.087 -3.537 -0.277 3.549 sum 7.442 2.221 0.650 7.794 Atomic orbital electron populations 1.70198 1.08892 1.34644 1.23012 1.30228 0.95084 1.07327 0.88077 0.81853 0.71253 0.67080 0.80442 1.24440 1.18671 1.20712 1.22616 0.90379 0.96814 1.35684 0.88715 1.18489 0.94041 0.85988 0.91419 1.21924 0.90024 1.01326 1.07833 1.20303 0.90906 0.81115 1.07340 1.50804 1.03252 1.04297 0.96200 1.96221 1.72138 1.15592 1.56848 1.96290 0.89712 1.95021 1.52367 1.22005 0.93282 0.93918 1.28285 1.96556 1.00000 1.98583 1.97482 1.22982 0.88179 0.96222 0.87396 1.66958 1.09481 1.27312 1.24419 0.88634 0.83914 0.78820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -32.84 13.58 23.18 0.31 -32.52 14 2 C 0.02 0.93 5.69 87.14 0.50 1.42 14 3 Si 1.17 44.74 25.77 68.60 1.77 46.50 14 4 H -0.31 -11.80 7.11 99.48 0.71 -11.09 14 5 H -0.26 -9.72 6.70 99.48 0.67 -9.05 14 6 H -0.28 -10.69 7.11 99.48 0.71 -9.99 14 7 C -0.43 -18.99 9.86 25.04 0.25 -18.74 14 8 H 0.09 4.18 8.06 -2.91 -0.02 4.16 14 9 C 0.22 9.59 6.42 40.15 0.26 9.85 14 10 C -0.18 -7.90 9.39 22.95 0.22 -7.68 14 11 C 0.09 3.95 6.93 36.55 0.25 4.20 14 12 N -0.02 -1.00 4.98 -46.06 -0.23 -1.23 14 13 O -0.23 -10.04 19.25 3.50 0.07 -9.97 14 14 O -0.13 -5.16 16.25 3.52 0.06 -5.10 14 15 C -0.29 -10.99 6.29 22.78 0.14 -10.84 14 16 Br -0.01 -0.31 30.32 -20.37 -0.62 -0.93 14 17 C 0.22 8.00 10.97 85.19 0.93 8.93 14 18 N -0.56 -23.28 4.77 -188.75 -0.90 -24.18 14 19 H 0.30 12.45 8.74 -92.71 -0.81 11.64 14 20 H 0.14 5.91 7.67 -2.91 -0.02 5.89 14 21 H 0.20 5.43 8.06 -2.91 -0.02 5.40 14 Total: -1.00 -47.53 223.93 4.21 -43.33 By element: Atomic # 1 Polarization: -4.24 SS G_CDS: 1.20 Total: -3.04 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 2.55 Total: -12.86 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.82 Total: -57.93 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.12 Total: -15.07 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.77 Total: 46.50 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -0.62 Total: -0.93 kcal Total: -47.53 4.21 -43.33 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307001493.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.784 kcal (2) G-P(sol) polarization free energy of solvation -47.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds