Wall clock time and date at job start Mon Mar 30 2020 06:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29507 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48494 * 109.47108 * 265.85860 * 3 2 1 5 5 H 1.48498 * 109.47186 * 25.86264 * 3 2 1 6 6 H 1.48502 * 109.46772 * 145.85973 * 3 2 1 7 7 C 1.46553 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00553 * 347.09595 * 7 2 1 9 9 C 1.40363 * 119.99488 * 167.09793 * 7 2 1 10 10 C 1.41605 * 120.70206 * 327.64145 * 9 7 2 11 11 C 1.36935 * 118.25866 * 180.25575 * 10 9 7 12 12 Br 1.89108 * 120.20656 * 180.02562 * 11 10 9 13 13 C 1.38861 * 119.59096 * 0.04640 * 11 10 9 14 14 N 1.32163 * 121.42989 * 359.95406 * 13 11 10 15 15 C 1.31425 * 121.89727 * 0.02562 * 14 13 11 16 16 N 1.48020 * 119.89109 * 179.97438 * 15 14 13 17 17 O 1.31702 * 120.00356 * 159.13006 * 16 15 14 18 18 O 1.31701 * 119.99581 * 339.13260 * 16 15 14 19 19 H 0.97000 * 119.99495 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.87209 * 0.25751 * 10 9 7 21 21 H 1.08002 * 119.28230 * 179.97438 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6177 0.0000 4 1 2.5641 1.9958 -1.3964 5 1 1.3855 2.6763 0.6107 6 1 3.4801 1.4669 0.7858 7 6 2.0278 -1.2692 -0.0006 8 1 1.5083 -2.1928 0.2079 9 6 3.4048 -1.2844 -0.2720 10 6 3.9768 -0.3426 -1.1614 11 6 5.3248 -0.4063 -1.3942 12 35 6.1462 0.8248 -2.5714 13 6 6.0847 -1.3807 -0.7607 14 7 5.5359 -2.2528 0.0669 15 6 4.2487 -2.2437 0.3319 16 7 3.6807 -3.2419 1.2656 17 8 2.5249 -3.0112 1.8533 18 8 4.3313 -4.3609 1.5088 19 1 -0.4849 0.8401 0.0004 20 1 3.3660 0.4063 -1.6436 21 1 7.1473 -1.4266 -0.9482 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307071332.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:26 Heat of formation + Delta-G solvation = 30.679552 kcal Electronic energy + Delta-G solvation = -13275.750498 eV Core-core repulsion = 10587.444321 eV Total energy + Delta-G solvation = -2688.306176 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.22757 -38.75983 -36.63963 -34.85764 -34.24432 -33.68382 -30.89153 -28.70422 -26.79520 -24.47430 -22.98949 -20.31696 -19.40002 -18.80170 -17.91432 -17.01630 -16.53637 -16.22115 -15.59419 -14.99709 -14.77873 -14.35845 -13.95818 -13.16839 -13.13592 -12.47649 -12.09927 -11.81227 -11.73988 -11.65287 -11.44955 -11.32869 -10.81598 -10.63105 -10.14598 -9.67171 -7.35359 -1.40034 0.08404 0.30058 0.36724 0.86850 1.04381 1.20168 1.35165 1.78852 2.02667 2.66540 3.54410 3.63963 3.73566 4.04220 4.14417 4.54960 4.74840 5.12115 5.16738 5.29345 5.68326 5.79280 6.25223 6.96051 7.26442 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.018803 B = 0.010688 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.771421 B = 2619.177825 C = 3948.788988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.696 5.696 2 C 0.028 3.972 3 Si 0.950 3.050 4 H -0.202 1.202 5 H -0.235 1.235 6 H -0.253 1.253 7 C -0.242 4.242 8 H 0.097 0.903 9 C -0.003 4.003 10 C -0.099 4.099 11 C -0.089 4.089 12 Br -0.002 7.002 13 C 0.074 3.926 14 N -0.434 5.434 15 C 0.046 3.954 16 N 0.041 4.959 17 O -0.316 6.316 18 O -0.367 6.367 19 H 0.338 0.662 20 H 0.168 0.832 21 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.397 14.241 -9.819 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.207 4.207 3 Si 0.765 3.235 4 H -0.125 1.125 5 H -0.158 1.158 6 H -0.176 1.176 7 C -0.269 4.269 8 H 0.114 0.886 9 C -0.012 4.012 10 C -0.128 4.128 11 C -0.171 4.171 12 Br 0.082 6.918 13 C -0.107 4.107 14 N -0.145 5.145 15 C -0.178 4.178 16 N 0.449 4.551 17 O -0.464 6.464 18 O -0.508 6.508 19 H 0.154 0.846 20 H 0.185 0.815 21 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.880 14.032 -9.804 18.100 hybrid contribution -0.986 -0.343 0.563 1.186 sum 4.894 13.689 -9.241 17.226 Atomic orbital electron populations 1.68823 1.10183 1.36487 1.15994 1.28909 0.96052 1.04353 0.91384 0.85778 0.80167 0.73728 0.83818 1.12453 1.15795 1.17636 1.22303 0.90993 0.96682 1.16933 0.88554 1.17759 0.93433 0.93898 0.96094 1.21832 0.94294 0.99536 0.97134 1.22635 0.95486 0.98703 1.00313 1.96669 1.80273 1.55451 1.59373 1.22729 1.00882 0.91846 0.95269 1.65924 1.11258 1.23803 1.13472 1.20311 0.90686 1.00015 1.06817 1.49710 1.01573 1.01803 1.02005 1.96066 1.07806 1.85292 1.57227 1.96051 1.63691 1.13980 1.77049 0.84634 0.81496 0.78698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -26.44 13.89 23.22 0.32 -26.11 14 2 C 0.03 1.07 5.64 87.21 0.49 1.56 14 3 Si 0.95 27.69 24.71 68.60 1.70 29.38 14 4 H -0.20 -4.65 6.40 99.48 0.64 -4.02 14 5 H -0.23 -5.90 7.11 99.48 0.71 -5.20 14 6 H -0.25 -8.34 7.08 99.48 0.70 -7.64 14 7 C -0.24 -11.39 8.41 24.96 0.21 -11.18 14 8 H 0.10 5.25 6.44 -2.91 -0.02 5.23 14 9 C 0.00 -0.14 5.17 -21.17 -0.11 -0.25 14 10 C -0.10 -3.60 7.19 22.79 0.16 -3.44 14 11 C -0.09 -2.92 6.20 22.11 0.14 -2.79 14 12 Br 0.00 -0.06 33.71 -20.37 -0.69 -0.74 14 13 C 0.07 2.66 10.93 84.79 0.93 3.59 14 14 N -0.43 -20.76 10.15 -183.61 -1.86 -22.62 14 15 C 0.05 2.42 7.78 130.53 1.02 3.43 14 16 N 0.04 2.48 4.95 -48.27 -0.24 2.24 14 17 O -0.32 -19.37 16.71 3.51 0.06 -19.31 14 18 O -0.37 -23.19 19.83 3.51 0.07 -23.12 14 19 H 0.34 10.27 8.27 -92.71 -0.77 9.50 14 20 H 0.17 5.09 4.62 -2.91 -0.01 5.08 14 21 H 0.20 5.42 8.06 -2.91 -0.02 5.40 14 Total: -1.00 -64.43 223.22 3.42 -61.01 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.23 Total: 8.36 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 2.84 Total: -9.08 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -1.78 Total: -46.50 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: 0.13 Total: -42.43 kcal Atomic # 14 Polarization: 27.69 SS G_CDS: 1.70 Total: 29.38 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -0.69 Total: -0.74 kcal Total: -64.43 3.42 -61.01 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307071332.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.690 kcal (2) G-P(sol) polarization free energy of solvation -64.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds