Wall clock time and date at job start Mon Mar 30 2020 06:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29594 * 1 3 3 Si 1.86803 * 120.00139 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00258 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00209 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00008 * 3 2 1 7 7 C 1.46360 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.41009 * 119.99732 * 0.27837 * 7 2 1 10 10 C 1.40848 * 119.81610 * 179.72439 * 9 7 2 11 11 C 1.38471 * 118.98345 * 179.97438 * 10 9 7 12 12 N 1.48013 * 120.71778 * 180.02562 * 11 10 9 13 13 O 1.31694 * 120.00016 * 359.97438 * 12 11 10 14 14 O 1.31704 * 120.00193 * 180.02562 * 12 11 10 15 15 C 1.38649 * 118.56458 * 0.02562 * 11 10 9 16 16 C 1.39644 * 119.53328 * 359.97438 * 15 11 10 17 17 Br 1.89104 * 119.49579 * 180.02562 * 16 15 11 18 18 N 1.31042 * 121.00454 * 359.72643 * 16 15 11 19 19 H 0.97000 * 119.99319 * 359.97438 * 1 2 3 20 20 H 1.07995 * 120.50910 * 0.02562 * 10 9 7 21 21 H 1.08000 * 120.23451 * 180.02562 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2959 0.0000 0.0000 3 14 2.2300 1.6177 0.0000 4 1 2.4775 2.0465 -1.4001 5 1 1.4275 2.6527 0.7001 6 1 3.5276 1.4401 0.7001 7 6 2.0277 -1.2675 -0.0006 8 1 3.1078 -1.2675 -0.0010 9 6 1.3226 -2.4886 -0.0070 10 6 2.0308 -3.7062 -0.0134 11 6 1.3210 -4.8951 -0.0192 12 7 2.0261 -6.1965 -0.0255 13 8 3.3425 -6.2322 -0.0261 14 8 1.3369 -7.3189 -0.0314 15 6 -0.0644 -4.8402 -0.0190 16 6 -0.7041 -3.5989 -0.0125 17 35 -2.5937 -3.5253 -0.0115 18 7 -0.0149 -2.4844 -0.0012 19 1 -0.4849 0.8401 0.0004 20 1 3.1107 -3.7123 -0.0130 21 1 -0.6448 -5.7510 -0.0230 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307180317.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:58 Heat of formation + Delta-G solvation = 48.147064 kcal Electronic energy + Delta-G solvation = -12905.435621 eV Core-core repulsion = 10217.886892 eV Total energy + Delta-G solvation = -2687.548728 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.33240 -37.80379 -34.20743 -33.82597 -32.07237 -31.41925 -29.31194 -26.47693 -25.95615 -21.93229 -21.59813 -18.75880 -17.63457 -16.83529 -15.64322 -15.36424 -15.02204 -14.87561 -13.85922 -13.19846 -13.07660 -11.97149 -11.66795 -11.55468 -11.09141 -10.79205 -10.67583 -10.54941 -10.47314 -10.16090 -9.94639 -9.75163 -9.16038 -8.51700 -8.32568 -7.20880 -5.21181 0.02900 1.70206 1.90137 2.24485 2.26411 2.75315 2.75683 2.80302 3.46892 3.96755 4.97272 5.52760 5.62083 5.77713 5.90363 6.10948 6.35282 6.50401 6.59539 6.97118 7.45454 7.49298 7.66965 8.02388 9.09088 9.52098 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.009713 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.460625 B = 2882.097179 C = 4700.708572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.667 5.667 2 C 0.056 3.944 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.378 4.378 8 H 0.106 0.894 9 C 0.237 3.763 10 C -0.193 4.193 11 C 0.082 3.918 12 N -0.009 5.009 13 O -0.189 6.189 14 O -0.188 6.188 15 C -0.275 4.275 16 C 0.195 3.805 17 Br -0.038 7.038 18 N -0.449 5.449 19 H 0.293 0.707 20 H 0.138 0.862 21 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.281 1.803 -0.009 3.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.283 5.283 2 C -0.178 4.178 3 Si 0.748 3.252 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.406 4.406 8 H 0.124 0.876 9 C 0.116 3.884 10 C -0.220 4.220 11 C -0.008 4.008 12 N 0.469 4.531 13 O -0.382 6.382 14 O -0.382 6.382 15 C -0.302 4.302 16 C -0.035 4.035 17 Br 0.045 6.955 18 N -0.164 5.164 19 H 0.106 0.894 20 H 0.156 0.844 21 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.874 3.354 0.012 5.917 hybrid contribution 1.279 -0.617 -0.018 1.420 sum -3.595 2.737 -0.006 4.518 Atomic orbital electron populations 1.69413 1.08489 1.30614 1.19781 1.27648 0.94975 1.02028 0.93188 0.85980 0.80627 0.78474 0.80093 1.18551 1.19348 1.17608 1.21204 0.94764 0.87723 1.36919 0.87588 1.18360 0.86747 0.91125 0.92215 1.22029 1.01171 0.90261 1.08579 1.20228 0.91829 0.79457 1.09330 1.50762 1.02741 1.04790 0.94825 1.96200 0.89770 1.96328 1.55892 1.96197 1.66232 1.19941 1.55840 1.20790 0.91053 0.98451 1.19931 1.22326 0.91639 0.90120 0.99430 1.96566 1.02200 1.99126 1.97587 1.68204 1.07218 1.25346 1.15584 0.89446 0.84405 0.84715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -14.79 11.60 55.97 0.65 -14.14 14 2 C 0.06 1.18 5.67 -15.23 -0.09 1.09 14 3 Si 0.93 15.20 29.64 -169.99 -5.04 10.16 14 4 H -0.26 -4.27 7.11 56.52 0.40 -3.86 14 5 H -0.27 -4.34 7.11 56.52 0.40 -3.93 14 6 H -0.25 -4.09 7.11 56.52 0.40 -3.69 14 7 C -0.38 -8.41 9.41 -35.27 -0.33 -8.74 14 8 H 0.11 2.12 7.94 -52.49 -0.42 1.71 14 9 C 0.24 5.64 6.56 -84.99 -0.56 5.08 14 10 C -0.19 -4.35 9.40 -38.51 -0.36 -4.71 14 11 C 0.08 1.86 6.93 -79.71 -0.55 1.31 14 12 N -0.01 -0.21 4.98 34.08 0.17 -0.04 14 13 O -0.19 -4.21 19.25 -31.56 -0.61 -4.82 14 14 O -0.19 -4.21 19.24 -31.57 -0.61 -4.82 14 15 C -0.27 -6.06 9.42 -38.91 -0.37 -6.43 14 16 C 0.19 4.37 7.18 -17.36 -0.12 4.25 14 17 Br -0.04 -0.71 33.86 -68.01 -2.30 -3.02 14 18 N -0.45 -10.91 7.95 -9.44 -0.08 -10.99 14 19 H 0.29 5.74 8.27 -40.82 -0.34 5.40 14 20 H 0.14 2.87 7.67 -52.49 -0.40 2.46 14 21 H 0.13 2.78 7.66 -52.49 -0.40 2.38 14 LS Contribution 233.95 15.07 3.53 3.53 Total: -1.00 -24.79 233.95 -7.02 -31.81 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -0.35 Total: 0.47 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -2.38 Total: -8.15 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.74 Total: -25.16 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -1.22 Total: -9.63 kcal Atomic # 14 Polarization: 15.20 SS G_CDS: -5.04 Total: 10.16 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -2.30 Total: -3.02 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -24.79 -7.02 -31.81 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307180317.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.960 kcal (2) G-P(sol) polarization free energy of solvation -24.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds