Wall clock time and date at job start Mon Mar 30 2020 06:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29594 * 1 3 3 Si 1.86803 * 120.00139 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00258 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00209 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00008 * 3 2 1 7 7 C 1.46360 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.41009 * 119.99732 * 0.27837 * 7 2 1 10 10 C 1.40848 * 119.81610 * 179.72439 * 9 7 2 11 11 C 1.38471 * 118.98345 * 179.97438 * 10 9 7 12 12 N 1.48013 * 120.71778 * 180.02562 * 11 10 9 13 13 O 1.31694 * 120.00016 * 359.97438 * 12 11 10 14 14 O 1.31704 * 120.00193 * 180.02562 * 12 11 10 15 15 C 1.38649 * 118.56458 * 0.02562 * 11 10 9 16 16 C 1.39644 * 119.53328 * 359.97438 * 15 11 10 17 17 Br 1.89104 * 119.49579 * 180.02562 * 16 15 11 18 18 N 1.31042 * 121.00454 * 359.72643 * 16 15 11 19 19 H 0.97000 * 119.99319 * 359.97438 * 1 2 3 20 20 H 1.07995 * 120.50910 * 0.02562 * 10 9 7 21 21 H 1.08000 * 120.23451 * 180.02562 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2959 0.0000 0.0000 3 14 2.2300 1.6177 0.0000 4 1 2.4775 2.0465 -1.4001 5 1 1.4275 2.6527 0.7001 6 1 3.5276 1.4401 0.7001 7 6 2.0277 -1.2675 -0.0006 8 1 3.1078 -1.2675 -0.0010 9 6 1.3226 -2.4886 -0.0070 10 6 2.0308 -3.7062 -0.0134 11 6 1.3210 -4.8951 -0.0192 12 7 2.0261 -6.1965 -0.0255 13 8 3.3425 -6.2322 -0.0261 14 8 1.3369 -7.3189 -0.0314 15 6 -0.0644 -4.8402 -0.0190 16 6 -0.7041 -3.5989 -0.0125 17 35 -2.5937 -3.5253 -0.0115 18 7 -0.0149 -2.4844 -0.0012 19 1 -0.4849 0.8401 0.0004 20 1 3.1107 -3.7123 -0.0130 21 1 -0.6448 -5.7510 -0.0230 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307180317.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:58 Heat of formation + Delta-G solvation = 35.285049 kcal Electronic energy + Delta-G solvation = -12905.993359 eV Core-core repulsion = 10217.886892 eV Total energy + Delta-G solvation = -2688.106467 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.06266 -39.56488 -35.85531 -35.59844 -33.78723 -33.10883 -30.97349 -28.21718 -27.67246 -23.63936 -23.33899 -20.46487 -19.41834 -18.55223 -17.19198 -17.15597 -16.73023 -16.59403 -15.40003 -14.93642 -14.62428 -13.53757 -13.19130 -13.04559 -12.70482 -12.55776 -12.37137 -12.06573 -11.97711 -11.94355 -11.53125 -11.31695 -10.84125 -10.23883 -10.01718 -8.79876 -6.92936 -1.73387 -0.03906 0.19971 0.52522 0.55905 1.41049 1.46267 1.57531 2.10869 2.37453 3.24776 3.81993 3.90036 4.06369 4.20320 4.40219 4.72350 4.79847 4.88283 5.26816 5.69937 5.82897 5.99871 6.31886 7.37428 7.97337 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.009713 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.460625 B = 2882.097179 C = 4700.708572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.019 3.981 3 Si 1.003 2.997 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.247 1.247 7 C -0.387 4.387 8 H 0.123 0.877 9 C 0.206 3.794 10 C -0.196 4.196 11 C 0.072 3.928 12 N -0.011 5.011 13 O -0.189 6.189 14 O -0.190 6.190 15 C -0.284 4.284 16 C 0.182 3.818 17 Br -0.007 7.007 18 N -0.474 5.474 19 H 0.303 0.697 20 H 0.150 0.850 21 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 3.001 0.009 4.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.316 5.316 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.170 1.170 7 C -0.415 4.415 8 H 0.141 0.859 9 C 0.085 3.915 10 C -0.223 4.223 11 C -0.018 4.018 12 N 0.467 4.533 13 O -0.382 6.382 14 O -0.383 6.383 15 C -0.311 4.311 16 C -0.048 4.048 17 Br 0.077 6.923 18 N -0.189 5.189 19 H 0.116 0.884 20 H 0.167 0.833 21 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.494 4.520 0.030 6.374 hybrid contribution 1.106 -0.974 -0.025 1.474 sum -3.388 3.546 0.005 4.905 Atomic orbital electron populations 1.69450 1.10129 1.32292 1.19708 1.28596 0.95658 1.04833 0.92161 0.84862 0.79251 0.73690 0.80125 1.18192 1.18740 1.16967 1.21770 0.95901 0.88232 1.35634 0.85888 1.18783 0.87190 0.92110 0.93406 1.22146 1.01717 0.90009 1.08460 1.20402 0.92262 0.79472 1.09705 1.50789 1.02771 1.04858 0.94884 1.96187 0.89794 1.96332 1.55870 1.96186 1.66246 1.19928 1.55927 1.20906 0.90987 0.98805 1.20445 1.22758 0.93289 0.89930 0.98775 1.96555 0.99159 1.99105 1.97484 1.68254 1.07656 1.26136 1.16831 0.88397 0.83268 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -30.47 11.60 23.18 0.27 -30.20 14 2 C 0.02 0.78 5.67 87.14 0.49 1.28 14 3 Si 1.00 29.41 29.64 68.60 2.03 31.45 14 4 H -0.26 -7.40 7.11 99.48 0.71 -6.69 14 5 H -0.26 -7.43 7.11 99.48 0.71 -6.72 14 6 H -0.25 -6.94 7.11 99.48 0.71 -6.24 14 7 C -0.39 -16.92 9.41 25.06 0.24 -16.68 14 8 H 0.12 4.75 7.94 -2.91 -0.02 4.73 14 9 C 0.21 9.78 6.56 40.17 0.26 10.05 14 10 C -0.20 -8.81 9.40 22.96 0.22 -8.59 14 11 C 0.07 3.25 6.93 36.53 0.25 3.50 14 12 N -0.01 -0.48 4.98 -46.10 -0.23 -0.71 14 13 O -0.19 -8.26 19.25 3.53 0.07 -8.19 14 14 O -0.19 -8.33 19.24 3.51 0.07 -8.26 14 15 C -0.28 -12.47 9.42 22.71 0.21 -12.26 14 16 C 0.18 8.15 7.18 85.15 0.61 8.77 14 17 Br -0.01 -0.24 33.86 -20.37 -0.69 -0.93 14 18 N -0.47 -23.03 7.95 -183.79 -1.46 -24.49 14 19 H 0.30 11.59 8.27 -92.71 -0.77 10.82 14 20 H 0.15 6.14 7.67 -2.91 -0.02 6.11 14 21 H 0.14 5.90 7.66 -2.91 -0.02 5.87 14 Total: -1.00 -51.02 233.95 3.63 -47.39 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.29 Total: 7.89 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 2.29 Total: -13.94 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -1.42 Total: -55.40 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.14 Total: -16.45 kcal Atomic # 14 Polarization: 29.41 SS G_CDS: 2.03 Total: 31.45 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -0.69 Total: -0.93 kcal Total: -51.02 3.63 -47.39 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307180317.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.673 kcal (2) G-P(sol) polarization free energy of solvation -51.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds