Wall clock time and date at job start Mon Mar 30 2020 06:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29565 * 1 3 3 Si 1.86803 * 120.00359 * 2 1 4 4 H 1.48501 * 109.46931 * 240.00323 * 3 2 1 5 5 H 1.48501 * 109.46699 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47298 * 120.00035 * 3 2 1 7 7 C 1.46397 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99889 * 191.19092 * 7 2 1 9 9 C 1.41160 * 120.00243 * 11.18449 * 7 2 1 10 10 C 1.41221 * 121.07352 * 204.11948 * 9 7 2 11 11 C 1.38118 * 118.80286 * 179.75069 * 10 9 7 12 12 Br 1.89095 * 119.48763 * 180.25128 * 11 10 9 13 13 N 1.31892 * 121.02170 * 0.23088 * 11 10 9 14 14 C 1.31817 * 122.42040 * 0.02562 * 13 11 10 15 15 N 1.48006 * 119.46964 * 180.02562 * 14 13 11 16 16 O 1.31700 * 120.00210 * 0.02562 * 15 14 13 17 17 O 1.31699 * 119.99952 * 180.02562 * 15 14 13 18 18 C 1.37997 * 121.05660 * 0.02895 * 14 13 11 19 19 H 0.97006 * 119.99596 * 359.97438 * 1 2 3 20 20 H 1.08004 * 120.59638 * 0.02562 * 10 9 7 21 21 H 1.08005 * 120.58142 * 179.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2956 0.0000 0.0000 3 14 2.2298 1.6177 0.0000 4 1 3.0834 1.6963 -1.2126 5 1 1.2647 2.7464 -0.0006 6 1 3.0835 1.6963 1.2124 7 6 2.0276 -1.2679 -0.0006 8 1 3.0923 -1.2768 0.1810 9 6 1.3419 -2.4786 -0.2382 10 6 1.8518 -3.7092 0.2308 11 6 1.1397 -4.8650 -0.0239 12 35 1.8010 -6.5225 0.6014 13 7 0.0054 -4.8303 -0.6960 14 6 -0.5081 -3.7078 -1.1582 15 7 -1.7861 -3.7445 -1.9039 16 8 -2.4010 -4.8923 -2.1007 17 8 -2.3083 -2.6292 -2.3708 18 6 0.1267 -2.4989 -0.9579 19 1 -0.4850 0.8401 0.0004 20 1 2.7796 -3.7454 0.7825 21 1 -0.3008 -1.5838 -1.3404 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307276377.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:08 Heat of formation + Delta-G solvation = 31.293376 kcal Electronic energy + Delta-G solvation = -12983.416869 eV Core-core repulsion = 10295.137310 eV Total energy + Delta-G solvation = -2688.279559 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.20546 -39.45870 -36.41560 -35.51533 -33.48170 -33.40897 -30.92347 -28.27268 -27.73471 -23.88498 -23.28022 -20.42942 -19.33814 -18.62000 -17.63293 -17.22558 -16.70499 -16.48768 -15.48435 -15.04011 -14.62352 -13.59282 -13.23193 -13.01971 -12.79143 -12.54611 -12.24064 -12.08964 -12.02448 -11.89821 -11.54967 -11.40651 -10.71342 -10.61686 -10.11344 -9.13519 -6.97375 -1.70595 -0.07374 0.17650 0.43339 0.48789 1.39082 1.48938 1.57267 2.07105 2.26043 2.98944 3.61998 3.85156 4.26326 4.36142 4.55617 4.72928 4.80047 5.27939 5.31410 5.62249 5.93057 6.14884 6.20841 6.75882 7.75780 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.008042 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.759392 B = 3480.722037 C = 4908.528006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.029 3.971 3 Si 1.010 2.990 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.245 1.245 7 C -0.401 4.401 8 H 0.129 0.871 9 C 0.080 3.920 10 C -0.227 4.227 11 C 0.163 3.837 12 Br -0.003 7.003 13 N -0.573 5.573 14 C 0.197 3.803 15 N -0.006 5.006 16 O -0.194 6.194 17 O -0.191 6.191 18 C -0.121 4.121 19 H 0.317 0.683 20 H 0.159 0.841 21 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.045 0.419 3.411 8.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.199 4.199 3 Si 0.827 3.173 4 H -0.173 1.173 5 H -0.190 1.190 6 H -0.168 1.168 7 C -0.429 4.429 8 H 0.147 0.853 9 C 0.071 3.929 10 C -0.252 4.252 11 C -0.051 4.051 12 Br 0.081 6.919 13 N -0.296 5.296 14 C -0.015 4.015 15 N 0.468 4.532 16 O -0.386 6.386 17 O -0.380 6.380 18 C -0.150 4.150 19 H 0.130 0.870 20 H 0.177 0.823 21 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.052 -0.878 3.773 8.935 hybrid contribution -0.563 1.270 -0.374 1.438 sum 7.489 0.392 3.399 8.233 Atomic orbital electron populations 1.69034 1.10717 1.34405 1.24234 1.28761 0.95450 1.05946 0.89696 0.84794 0.78662 0.72545 0.81333 1.17341 1.18985 1.16787 1.21702 0.97662 0.88327 1.35232 0.85291 1.17989 0.90116 0.94431 0.90369 1.22207 1.04577 0.90531 1.07921 1.22193 0.91848 0.92860 0.98178 1.96585 1.83776 1.25570 1.85978 1.65282 1.16006 1.28286 1.19996 1.20315 0.86091 0.92523 1.02549 1.50784 1.02913 1.01754 0.97754 1.96171 1.63972 1.14176 1.64324 1.96179 1.69679 1.18426 1.53717 1.22491 0.97791 0.95410 0.99316 0.86958 0.82338 0.82767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -31.38 10.82 23.18 0.25 -31.13 14 2 C 0.03 1.09 5.47 87.15 0.48 1.57 14 3 Si 1.01 27.06 29.66 68.60 2.03 29.10 14 4 H -0.25 -6.57 7.11 99.48 0.71 -5.86 14 5 H -0.27 -6.96 7.11 99.48 0.71 -6.25 14 6 H -0.24 -6.18 7.11 99.48 0.71 -5.47 14 7 C -0.40 -15.96 9.41 25.11 0.24 -15.73 14 8 H 0.13 4.44 7.96 -2.91 -0.02 4.41 14 9 C 0.08 3.54 5.65 -21.09 -0.12 3.42 14 10 C -0.23 -9.27 9.64 22.97 0.22 -9.05 14 11 C 0.16 7.03 7.16 84.66 0.61 7.63 14 12 Br 0.00 -0.09 33.86 -20.37 -0.69 -0.78 14 13 N -0.57 -28.34 9.97 -181.83 -1.81 -30.16 14 14 C 0.20 10.03 7.81 129.60 1.01 11.04 14 15 N -0.01 -0.31 4.98 -50.06 -0.25 -0.56 14 16 O -0.19 -10.04 19.75 3.52 0.07 -9.97 14 17 O -0.19 -9.58 19.12 3.52 0.07 -9.51 14 18 C -0.12 -5.88 8.38 22.95 0.19 -5.69 14 19 H 0.32 11.48 8.27 -92.70 -0.77 10.71 14 20 H 0.16 5.45 8.06 -2.91 -0.02 5.43 14 21 H 0.15 7.62 5.58 -2.91 -0.02 7.60 14 Total: -1.00 -52.83 232.85 3.59 -49.24 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.29 Total: 10.57 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 2.63 Total: -6.80 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -1.81 Total: -61.85 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.14 Total: -19.48 kcal Atomic # 14 Polarization: 27.06 SS G_CDS: 2.03 Total: 29.10 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -0.69 Total: -0.78 kcal Total: -52.83 3.59 -49.24 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307276377.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.534 kcal (2) G-P(sol) polarization free energy of solvation -52.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds