Wall clock time and date at job start Mon Mar 30 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47173 * 50.30453 * 3 2 1 5 5 C 1.36927 * 120.00103 * 95.99905 * 4 3 2 6 6 H 1.08003 * 120.00234 * 159.12795 * 5 4 3 7 7 C 1.38853 * 120.00162 * 339.12698 * 5 4 3 8 8 N 1.31540 * 119.99627 * 339.45301 * 7 5 4 9 9 Si 1.86794 * 120.00284 * 159.45185 * 7 5 4 10 10 H 1.48502 * 109.47176 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47361 * 119.99884 * 9 7 5 12 12 H 1.48498 * 109.47521 * 239.99998 * 9 7 5 13 13 C 1.38529 * 119.99747 * 275.72191 * 4 3 2 14 14 C 1.39620 * 120.52372 * 185.27290 * 13 4 3 15 15 C 1.38326 * 118.34318 * 179.97438 * 14 13 4 16 16 Cl 1.73604 * 120.41135 * 179.97438 * 15 14 13 17 17 N 1.32661 * 119.18411 * 0.02562 * 15 14 13 18 18 C 1.31927 * 120.98640 * 359.97438 * 17 15 14 19 19 Cl 1.73596 * 119.08995 * 179.97438 * 18 17 15 20 20 N 1.31860 * 121.82140 * 359.73775 * 18 17 15 21 21 H 1.08997 * 109.47012 * 290.29958 * 3 2 1 22 22 H 1.08995 * 109.46838 * 170.30456 * 3 2 1 23 23 H 0.97003 * 119.99598 * 180.02562 * 8 7 5 24 24 H 1.08007 * 120.82256 * 359.96275 * 14 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0968 -0.8813 -1.0628 5 6 3.4416 -0.3596 -2.2809 6 1 4.0997 -0.9097 -2.9373 7 6 2.9453 0.8767 -2.6724 8 7 1.8638 1.3617 -2.1020 9 14 3.8134 1.8510 -4.0089 10 1 4.9967 1.0912 -4.4861 11 1 2.8807 2.0766 -5.1421 12 1 4.2528 3.1597 -3.4614 13 6 3.2155 -2.2423 -0.8334 14 6 3.7820 -3.0773 -1.7984 15 6 3.8788 -4.4292 -1.5220 16 17 4.5735 -5.5162 -2.6838 17 7 3.4334 -4.8851 -0.3586 18 6 2.9030 -4.0694 0.5324 19 17 2.3352 -4.7190 2.0388 20 7 2.7965 -2.7737 0.3123 21 1 2.9715 -0.3557 0.9638 22 1 2.9709 1.0138 -0.1731 23 1 1.5169 2.2252 -2.3758 24 1 4.1357 -2.6775 -2.7374 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307299272.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:51 Heat of formation + Delta-G solvation = 67.166437 kcal Electronic energy + Delta-G solvation = -15919.462216 eV Core-core repulsion = 12920.167831 eV Total energy + Delta-G solvation = -2999.294385 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 271.993 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75325 -39.01829 -37.93240 -37.55789 -36.63314 -34.66952 -33.37636 -32.06228 -29.35356 -26.94987 -25.00281 -23.66915 -20.19925 -19.53293 -18.35168 -18.16451 -17.05809 -16.29636 -16.25623 -15.95204 -15.76579 -15.18009 -14.60442 -14.29670 -13.66653 -13.57324 -13.26700 -12.96247 -12.93337 -12.64429 -12.48335 -12.23404 -12.21646 -12.01864 -11.84710 -11.55828 -11.01076 -10.47901 -10.26023 -9.40810 -8.57353 -6.04898 -0.03208 0.24501 0.28646 0.91188 1.49781 1.52506 1.65057 1.78886 2.23882 2.30516 2.62803 2.80355 2.96421 3.54054 3.70437 3.90140 4.32114 4.48625 4.52602 4.69560 5.07135 5.30931 5.66209 5.88466 6.39658 6.92263 6.96733 7.00830 7.40906 8.44468 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.017181 B = 0.007546 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.334692 B = 3709.887515 C = 5123.853103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.264 3.736 3 C 0.237 3.763 4 N -0.394 5.394 5 C -0.336 4.336 6 H 0.125 0.875 7 C 0.010 3.990 8 N -0.877 5.877 9 Si 1.001 2.999 10 H -0.251 1.251 11 H -0.290 1.290 12 H -0.271 1.271 13 C 0.383 3.617 14 C -0.272 4.272 15 C 0.249 3.751 16 Cl -0.009 7.009 17 N -0.598 5.598 18 C 0.415 3.585 19 Cl 0.023 6.977 20 N -0.593 5.593 21 H 0.120 0.880 22 H 0.130 0.870 23 H 0.281 0.719 24 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.442 -3.810 0.776 8.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.054 4.054 3 C 0.111 3.889 4 N -0.084 5.084 5 C -0.464 4.464 6 H 0.142 0.858 7 C -0.197 4.197 8 N -0.511 5.511 9 Si 0.823 3.177 10 H -0.174 1.174 11 H -0.216 1.216 12 H -0.196 1.196 13 C 0.137 3.863 14 C -0.304 4.304 15 C 0.084 3.916 16 Cl 0.019 6.981 17 N -0.329 5.329 18 C 0.118 3.882 19 Cl 0.051 6.949 20 N -0.325 5.325 21 H 0.138 0.862 22 H 0.148 0.852 23 H 0.092 0.908 24 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.331 -3.787 1.534 6.716 hybrid contribution 0.527 0.649 -1.268 1.519 sum 5.858 -3.138 0.265 6.650 Atomic orbital electron populations 1.80869 1.14818 1.11366 1.11884 1.29496 0.95638 0.90388 0.89837 1.18901 0.80403 0.97682 0.91910 1.42728 1.53366 1.00025 1.12268 1.20225 1.27943 1.03490 0.94758 0.85812 1.26229 0.94517 0.98289 1.00635 1.70021 1.17876 1.19891 1.43303 0.84735 0.78356 0.78071 0.76500 1.17399 1.21610 1.19593 1.18425 0.93540 0.85772 0.88533 1.21681 1.12793 0.91807 1.04088 1.21335 0.92867 0.88336 0.89029 1.98374 1.81260 1.64589 1.53855 1.67025 1.22087 1.40112 1.03666 1.22204 0.91725 0.84934 0.89355 1.98378 1.86362 1.84816 1.25354 1.67194 1.28240 1.13217 1.23897 0.86200 0.85199 0.90827 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.80 18.54 20.01 0.37 -24.43 14 2 C 0.26 11.76 13.49 89.44 1.21 12.96 14 3 C 0.24 9.08 5.05 84.57 0.43 9.51 14 4 N -0.39 -16.21 2.68 -527.16 -1.41 -17.63 14 5 C -0.34 -13.83 9.13 84.05 0.77 -13.06 14 6 H 0.12 4.75 6.07 -2.91 -0.02 4.73 14 7 C 0.01 0.39 4.86 84.88 0.41 0.81 14 8 N -0.88 -39.24 9.54 21.65 0.21 -39.03 14 9 Si 1.00 32.93 29.60 68.60 2.03 34.96 14 10 H -0.25 -7.74 7.11 99.48 0.71 -7.03 14 11 H -0.29 -10.09 7.11 99.48 0.71 -9.38 14 12 H -0.27 -8.76 7.11 99.48 0.71 -8.05 14 13 C 0.38 15.65 7.30 133.14 0.97 16.62 14 14 C -0.27 -10.18 9.18 22.62 0.21 -9.98 14 15 C 0.25 8.96 7.33 84.59 0.62 9.58 14 16 Cl -0.01 -0.27 29.15 -2.72 -0.08 -0.35 14 17 N -0.60 -22.86 10.40 -181.85 -1.89 -24.75 14 18 C 0.42 15.97 8.18 180.82 1.48 17.45 14 19 Cl 0.02 0.75 29.27 -2.72 -0.08 0.67 14 20 N -0.59 -24.10 9.39 -188.28 -1.77 -25.87 14 21 H 0.12 3.99 7.67 -2.39 -0.02 3.97 14 22 H 0.13 4.78 6.65 -2.39 -0.02 4.77 14 23 H 0.28 12.19 8.31 -92.71 -0.77 11.42 14 24 H 0.16 5.58 6.19 -2.91 -0.02 5.56 14 Total: -1.00 -51.29 259.30 4.75 -46.55 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.28 Total: 5.98 kcal Atomic # 6 Polarization: 37.80 SS G_CDS: 6.09 Total: 43.89 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -4.49 Total: -131.70 kcal Atomic # 14 Polarization: 32.93 SS G_CDS: 2.03 Total: 34.96 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -0.16 Total: 0.31 kcal Total: -51.29 4.75 -46.55 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307299272.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.712 kcal (2) G-P(sol) polarization free energy of solvation -51.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds