Wall clock time and date at job start Mon Mar 30 2020 06:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29486 * 1 3 3 Si 1.86795 * 120.00228 * 2 1 4 4 H 1.48497 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47202 * 300.00221 * 3 2 1 6 6 H 1.48503 * 109.47390 * 60.00068 * 3 2 1 7 7 C 1.46583 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99710 * 196.63320 * 7 2 1 9 9 C 1.40235 * 119.99657 * 16.63261 * 7 2 1 10 10 C 1.41813 * 120.72950 * 48.78926 * 9 7 2 11 11 Br 1.89103 * 120.94370 * 0.03775 * 10 9 7 12 12 C 1.38066 * 118.11224 * 180.02562 * 10 9 7 13 13 C 1.38621 * 119.46541 * 359.97438 * 12 10 9 14 14 N 1.32222 * 121.46607 * 359.73006 * 13 12 10 15 15 C 1.31349 * 122.07616 * 0.56608 * 14 13 12 16 16 N 1.48021 * 119.83166 * 179.70812 * 15 14 13 17 17 O 1.31699 * 119.99876 * 174.46430 * 16 15 14 18 18 O 1.31701 * 120.00252 * 354.19819 * 16 15 14 19 19 H 0.97005 * 119.99886 * 354.39853 * 1 2 3 20 20 H 1.08004 * 120.26658 * 179.97438 * 12 10 9 21 21 H 1.08001 * 119.26425 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 3.6889 1.3463 0.0006 5 1 1.8702 2.3964 -1.2125 6 1 1.8702 2.3964 1.2125 7 6 2.0278 -1.2695 -0.0006 8 1 3.0738 -1.2891 0.2671 9 6 1.3705 -2.4583 -0.3487 10 6 0.5773 -2.5309 -1.5220 11 35 0.3792 -1.0309 -2.6563 12 6 -0.0461 -3.7280 -1.8128 13 6 0.1207 -4.8084 -0.9604 14 7 0.8695 -4.7213 0.1259 15 6 1.4845 -3.6104 0.4619 16 7 2.3055 -3.5666 1.6927 17 8 3.0107 -2.4909 1.9760 18 8 2.3268 -4.6012 2.5073 19 1 -0.4850 0.8361 0.0820 20 1 -0.6588 -3.8220 -2.6972 21 1 -0.3681 -5.7434 -1.1912 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307462035.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:39 Heat of formation + Delta-G solvation = 51.202299 kcal Electronic energy + Delta-G solvation = -13432.131432 eV Core-core repulsion = 10744.715189 eV Total energy + Delta-G solvation = -2687.416243 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.23920 -36.78824 -34.82045 -32.80002 -32.17916 -31.01275 -29.30177 -26.74643 -24.92845 -22.15082 -21.27255 -18.33865 -17.15808 -16.80336 -15.94653 -15.16082 -14.75191 -14.59160 -13.70214 -12.93109 -12.81226 -12.21243 -12.14887 -11.79662 -11.42892 -10.76755 -10.67026 -10.23788 -9.71571 -9.50207 -9.26438 -9.16936 -8.87491 -8.55392 -8.18046 -7.63755 -5.29050 0.68577 2.01831 2.29892 2.32199 2.72344 2.73597 2.77448 2.82682 3.45293 3.86251 4.55239 5.32643 5.56897 5.76144 5.90447 6.15529 6.34800 6.58014 6.91486 7.17291 7.54817 7.71682 7.80016 8.22275 8.87294 9.18171 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.020146 B = 0.013306 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.523108 B = 2103.826305 C = 3305.197789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.062 3.938 3 Si 0.929 3.071 4 H -0.242 1.242 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.318 4.318 8 H 0.131 0.869 9 C 0.065 3.935 10 C -0.071 4.071 11 Br -0.045 7.045 12 C -0.097 4.097 13 C 0.020 3.980 14 N -0.405 5.405 15 C 0.094 3.906 16 N 0.036 4.964 17 O -0.240 6.240 18 O -0.295 6.295 19 H 0.308 0.692 20 H 0.132 0.868 21 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 4.602 -9.076 10.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.172 4.172 3 Si 0.749 3.251 4 H -0.165 1.165 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.345 4.345 8 H 0.148 0.852 9 C 0.056 3.944 10 C -0.160 4.160 11 Br 0.040 6.960 12 C -0.120 4.120 13 C -0.152 4.152 14 N -0.117 5.117 15 C -0.131 4.131 16 N 0.470 4.530 17 O -0.408 6.408 18 O -0.452 6.452 19 H 0.121 0.879 20 H 0.150 0.850 21 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.222 4.503 -9.163 10.706 hybrid contribution 0.191 0.902 0.150 0.934 sum -3.031 5.405 -9.013 10.938 Atomic orbital electron populations 1.69050 1.09298 1.33176 1.19929 1.27722 0.94920 1.02680 0.91881 0.85818 0.81968 0.77695 0.79631 1.16488 1.18423 1.18517 1.21964 0.98807 0.88522 1.25229 0.85186 1.17411 0.93093 0.92873 0.91054 1.22259 1.05539 0.92144 0.96086 1.96433 1.96689 1.42139 1.60704 1.21879 0.97209 0.92634 1.00310 1.21895 1.02528 0.98749 0.91990 1.65706 1.03410 1.26545 1.16012 1.20348 1.08528 0.94051 0.90173 1.49515 1.00056 1.01090 1.02327 1.96097 1.41867 1.18611 1.84181 1.96125 1.76089 1.24829 1.48159 0.87908 0.85046 0.82806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -14.60 11.27 55.99 0.63 -13.97 14 2 C 0.06 1.29 3.95 -15.18 -0.06 1.23 14 3 Si 0.93 15.89 29.67 -169.99 -5.04 10.85 14 4 H -0.24 -4.18 7.11 56.52 0.40 -3.77 14 5 H -0.26 -4.21 7.11 56.52 0.40 -3.81 14 6 H -0.26 -4.39 7.11 56.52 0.40 -3.99 14 7 C -0.32 -7.48 7.07 -35.47 -0.25 -7.74 14 8 H 0.13 3.12 6.48 -52.49 -0.34 2.78 14 9 C 0.06 1.58 5.27 -106.61 -0.56 1.01 14 10 C -0.07 -1.51 5.95 -38.28 -0.23 -1.74 14 11 Br -0.05 -0.83 29.77 -68.01 -2.02 -2.85 14 12 C -0.10 -1.81 9.87 -39.50 -0.39 -2.20 14 13 C 0.02 0.40 11.17 -17.24 -0.19 0.21 14 14 N -0.40 -9.88 10.06 -9.45 -0.10 -9.98 14 15 C 0.09 2.48 7.89 -145.43 -1.15 1.34 14 16 N 0.04 1.00 4.98 33.38 0.17 1.17 14 17 O -0.24 -6.66 16.45 -31.57 -0.52 -7.18 14 18 O -0.30 -8.62 19.77 -31.57 -0.62 -9.24 14 19 H 0.31 5.65 8.28 -40.82 -0.34 5.31 14 20 H 0.13 1.94 8.06 -52.48 -0.42 1.52 14 21 H 0.15 2.37 8.06 -52.49 -0.42 1.95 14 LS Contribution 225.34 15.07 3.40 3.40 Total: -1.00 -28.45 225.34 -7.26 -35.72 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -0.32 Total: -0.02 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.83 Total: -7.88 kcal Atomic # 7 Polarization: -23.48 SS G_CDS: 0.70 Total: -22.78 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -1.14 Total: -16.42 kcal Atomic # 14 Polarization: 15.89 SS G_CDS: -5.04 Total: 10.85 kcal Atomic # 35 Polarization: -0.83 SS G_CDS: -2.02 Total: -2.85 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -28.45 -7.26 -35.72 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307462035.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.918 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds