Wall clock time and date at job start Mon Mar 30 2020 06:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29486 * 1 3 3 Si 1.86795 * 120.00228 * 2 1 4 4 H 1.48497 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47202 * 300.00221 * 3 2 1 6 6 H 1.48503 * 109.47390 * 60.00068 * 3 2 1 7 7 C 1.46583 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99710 * 196.63320 * 7 2 1 9 9 C 1.40235 * 119.99657 * 16.63261 * 7 2 1 10 10 C 1.41813 * 120.72950 * 48.78926 * 9 7 2 11 11 Br 1.89103 * 120.94370 * 0.03775 * 10 9 7 12 12 C 1.38066 * 118.11224 * 180.02562 * 10 9 7 13 13 C 1.38621 * 119.46541 * 359.97438 * 12 10 9 14 14 N 1.32222 * 121.46607 * 359.73006 * 13 12 10 15 15 C 1.31349 * 122.07616 * 0.56608 * 14 13 12 16 16 N 1.48021 * 119.83166 * 179.70812 * 15 14 13 17 17 O 1.31699 * 119.99876 * 174.46430 * 16 15 14 18 18 O 1.31701 * 120.00252 * 354.19819 * 16 15 14 19 19 H 0.97005 * 119.99886 * 354.39853 * 1 2 3 20 20 H 1.08004 * 120.26658 * 179.97438 * 12 10 9 21 21 H 1.08001 * 119.26425 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 3.6889 1.3463 0.0006 5 1 1.8702 2.3964 -1.2125 6 1 1.8702 2.3964 1.2125 7 6 2.0278 -1.2695 -0.0006 8 1 3.0738 -1.2891 0.2671 9 6 1.3705 -2.4583 -0.3487 10 6 0.5773 -2.5309 -1.5220 11 35 0.3792 -1.0309 -2.6563 12 6 -0.0461 -3.7280 -1.8128 13 6 0.1207 -4.8084 -0.9604 14 7 0.8695 -4.7213 0.1259 15 6 1.4845 -3.6104 0.4619 16 7 2.3055 -3.5666 1.6927 17 8 3.0107 -2.4909 1.9760 18 8 2.3268 -4.6012 2.5073 19 1 -0.4850 0.8361 0.0820 20 1 -0.6588 -3.8220 -2.6972 21 1 -0.3681 -5.7434 -1.1912 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307462035.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:39 Heat of formation + Delta-G solvation = 33.267912 kcal Electronic energy + Delta-G solvation = -13432.909125 eV Core-core repulsion = 10744.715189 eV Total energy + Delta-G solvation = -2688.193937 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.97682 -38.54458 -36.62914 -34.61506 -33.89611 -32.76882 -30.94606 -28.59767 -26.73173 -23.86327 -23.03924 -20.13286 -18.91724 -18.61946 -17.63592 -16.88630 -16.42038 -16.28992 -15.31269 -14.65954 -14.41943 -13.89624 -13.81098 -13.32651 -13.13195 -12.35992 -12.08493 -11.77098 -11.57377 -11.34131 -11.28232 -10.84607 -10.54016 -10.18859 -9.92783 -9.36466 -7.17652 -1.24918 0.34830 0.54175 0.63094 1.06046 1.27882 1.35592 1.49641 2.04798 2.18172 2.80057 3.72697 3.95859 4.11659 4.30779 4.41879 4.62491 4.91295 5.29188 5.38844 5.66450 5.79780 5.99910 6.45247 7.14677 7.48505 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.020146 B = 0.013306 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.523108 B = 2103.826305 C = 3305.197789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.687 5.687 2 C 0.026 3.974 3 Si 0.983 3.017 4 H -0.249 1.249 5 H -0.230 1.230 6 H -0.252 1.252 7 C -0.265 4.265 8 H 0.117 0.883 9 C 0.014 3.986 10 C -0.064 4.064 11 Br -0.011 7.011 12 C -0.097 4.097 13 C 0.076 3.924 14 N -0.461 5.461 15 C 0.077 3.923 16 N 0.032 4.968 17 O -0.317 6.317 18 O -0.414 6.414 19 H 0.330 0.670 20 H 0.186 0.814 21 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 7.066 -13.139 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.208 4.208 3 Si 0.798 3.202 4 H -0.172 1.172 5 H -0.153 1.153 6 H -0.175 1.175 7 C -0.295 4.295 8 H 0.135 0.865 9 C 0.004 3.996 10 C -0.154 4.154 11 Br 0.075 6.925 12 C -0.119 4.119 13 C -0.102 4.102 14 N -0.173 5.173 15 C -0.149 4.149 16 N 0.427 4.573 17 O -0.462 6.462 18 O -0.540 6.540 19 H 0.145 0.855 20 H 0.203 0.797 21 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.538 6.881 -12.929 15.658 hybrid contribution 0.528 0.497 0.733 1.032 sum -5.010 7.379 -12.195 15.109 Atomic orbital electron populations 1.68972 1.10046 1.35662 1.16185 1.28518 0.95822 1.04361 0.92068 0.85070 0.80258 0.73687 0.81176 1.17227 1.15321 1.17542 1.22569 0.98391 0.90154 1.18378 0.86481 1.17763 0.95917 0.92784 0.93086 1.22599 1.03091 0.94541 0.95162 1.96468 1.96460 1.40675 1.58912 1.22463 0.96675 0.91000 1.01763 1.23133 0.97560 1.00726 0.88799 1.65832 1.06227 1.26797 1.18430 1.20663 1.08642 0.95227 0.90363 1.49521 1.02694 1.00991 1.04051 1.95960 1.44475 1.19498 1.86270 1.96028 1.80569 1.26243 1.51196 0.85526 0.79653 0.77677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -26.25 11.27 23.22 0.26 -25.99 14 2 C 0.03 1.00 3.95 87.22 0.34 1.35 14 3 Si 0.98 29.24 29.67 68.60 2.04 31.28 14 4 H -0.25 -7.77 7.11 99.48 0.71 -7.06 14 5 H -0.23 -5.89 7.11 99.48 0.71 -5.19 14 6 H -0.25 -7.26 7.11 99.48 0.71 -6.55 14 7 C -0.27 -12.32 7.07 24.93 0.18 -12.15 14 8 H 0.12 5.77 6.48 -2.91 -0.02 5.75 14 9 C 0.01 0.66 5.27 -21.15 -0.11 0.55 14 10 C -0.06 -2.49 5.95 23.11 0.14 -2.35 14 11 Br -0.01 -0.35 29.77 -20.37 -0.61 -0.95 14 12 C -0.10 -3.08 9.87 22.32 0.22 -2.86 14 13 C 0.08 2.70 11.17 84.73 0.95 3.65 14 14 N -0.46 -22.70 10.06 -183.80 -1.85 -24.55 14 15 C 0.08 4.23 7.89 130.55 1.03 5.26 14 16 N 0.03 2.01 4.98 -48.30 -0.24 1.77 14 17 O -0.32 -19.49 16.45 3.52 0.06 -19.43 14 18 O -0.41 -27.49 19.77 3.51 0.07 -27.42 14 19 H 0.33 10.52 8.28 -92.70 -0.77 9.75 14 20 H 0.19 4.00 8.06 -2.91 -0.02 3.98 14 21 H 0.21 5.05 8.06 -2.91 -0.02 5.03 14 Total: -1.00 -69.91 225.34 3.76 -66.15 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.29 Total: 5.70 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 2.74 Total: -6.55 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -1.83 Total: -48.78 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: 0.13 Total: -46.85 kcal Atomic # 14 Polarization: 29.24 SS G_CDS: 2.04 Total: 31.28 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -0.61 Total: -0.95 kcal Total: -69.91 3.76 -66.15 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307462035.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.413 kcal (2) G-P(sol) polarization free energy of solvation -69.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds