Wall clock time and date at job start Mon Mar 30 2020 06:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29579 * 1 3 3 Si 1.86803 * 120.00164 * 2 1 4 4 H 1.48495 * 109.47163 * 274.99151 * 3 2 1 5 5 H 1.48496 * 109.46899 * 34.99257 * 3 2 1 6 6 H 1.48507 * 109.46833 * 154.98967 * 3 2 1 7 7 C 1.46392 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00168 * 186.01330 * 7 2 1 9 9 C 1.40842 * 119.99799 * 6.00428 * 7 2 1 10 10 N 1.33825 * 119.84945 * 353.81110 * 9 7 2 11 11 C 1.30892 * 121.57313 * 180.28329 * 10 9 7 12 12 N 1.48009 * 119.45750 * 179.74557 * 11 10 9 13 13 O 1.31709 * 119.99627 * 179.97438 * 12 11 10 14 14 O 1.31697 * 120.00330 * 359.97438 * 12 11 10 15 15 C 1.39627 * 121.08035 * 359.72829 * 11 10 9 16 16 C 1.38512 * 119.57669 * 359.97438 * 15 11 10 17 17 C 1.38718 * 118.54243 * 0.02562 * 16 15 11 18 18 Br 1.89094 * 120.54056 * 179.97438 * 17 16 15 19 19 H 0.96998 * 119.99452 * 359.97438 * 1 2 3 20 20 H 1.07996 * 120.21054 * 180.02562 * 15 11 10 21 21 H 1.07995 * 120.72844 * 179.97438 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2958 0.0000 0.0000 3 14 2.2298 1.6177 0.0000 4 1 2.3719 2.1073 -1.3947 5 1 1.4840 2.6199 0.8029 6 1 3.5762 1.4119 0.5920 7 6 2.0277 -1.2678 -0.0006 8 1 3.1033 -1.2705 0.0974 9 6 1.3293 -2.4841 -0.1287 10 7 -0.0090 -2.4873 -0.1249 11 6 -0.6920 -3.5983 -0.2363 12 7 -2.1711 -3.5481 -0.2209 13 8 -2.8689 -4.6595 -0.3327 14 8 -2.7895 -2.3921 -0.0954 15 6 -0.0480 -4.8300 -0.3697 16 6 1.3361 -4.8797 -0.3853 17 6 2.0434 -3.6923 -0.2661 18 35 3.9342 -3.6946 -0.2798 19 1 -0.4849 0.8401 0.0004 20 1 -0.6255 -5.7380 -0.4610 21 1 1.8534 -5.8222 -0.4872 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307642573.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:16 Heat of formation + Delta-G solvation = 55.028924 kcal Electronic energy + Delta-G solvation = -13117.002843 eV Core-core repulsion = 10429.752534 eV Total energy + Delta-G solvation = -2687.250308 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.27492 -37.52675 -34.15750 -33.57371 -32.17931 -31.16465 -29.18398 -26.90959 -25.12189 -22.19542 -21.31299 -18.53326 -17.63999 -17.00408 -15.45036 -15.21678 -15.07006 -14.73621 -13.66381 -12.99674 -12.83041 -11.75621 -11.61460 -11.44925 -11.39355 -10.66825 -10.56857 -10.52466 -10.34356 -9.92083 -9.86983 -9.44223 -8.91586 -8.52883 -8.30791 -7.17200 -5.20186 0.21210 1.89354 2.13646 2.25864 2.63401 2.79081 2.82424 2.85452 3.51817 4.01393 4.96066 5.34427 5.56452 5.79363 5.93731 6.34148 6.45138 6.60451 6.80873 7.12179 7.39846 7.64762 7.76075 8.04183 9.00086 9.56044 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.011581 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.816868 B = 2417.131484 C = 4245.204684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.659 5.659 2 C 0.052 3.948 3 Si 0.925 3.075 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.251 1.251 7 C -0.372 4.372 8 H 0.117 0.883 9 C 0.254 3.746 10 N -0.429 5.429 11 C 0.268 3.732 12 N -0.016 5.016 13 O -0.209 6.209 14 O -0.132 6.132 15 C -0.275 4.275 16 C -0.003 4.003 17 C -0.228 4.228 18 Br -0.071 7.071 19 H 0.296 0.704 20 H 0.132 0.868 21 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.473 -1.694 -0.356 7.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.275 5.275 2 C -0.184 4.184 3 Si 0.746 3.254 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.174 1.174 7 C -0.398 4.398 8 H 0.135 0.865 9 C 0.133 3.867 10 N -0.148 5.148 11 C 0.036 3.964 12 N 0.466 4.534 13 O -0.392 6.392 14 O -0.340 6.340 15 C -0.304 4.304 16 C -0.029 4.029 17 C -0.313 4.313 18 Br 0.013 6.987 19 H 0.109 0.891 20 H 0.150 0.850 21 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.205 -0.857 -0.282 8.255 hybrid contribution -0.357 -0.101 -0.088 0.381 sum 7.848 -0.958 -0.370 7.915 Atomic orbital electron populations 1.69413 1.08421 1.31079 1.18548 1.27758 0.94987 1.02270 0.93400 0.85983 0.80794 0.78577 0.80018 1.18531 1.19229 1.17402 1.21520 0.95715 0.87795 1.34814 0.86516 1.17858 0.84247 0.91736 0.92821 1.67157 1.07884 1.24882 1.14911 1.20800 0.78455 0.92683 1.04496 1.50804 1.05145 1.01879 0.95600 1.96171 1.66624 1.19373 1.57077 1.96237 1.73811 1.12796 1.51112 1.20712 0.94092 0.95919 1.19679 1.20764 0.92054 0.96521 0.93516 1.22526 0.88779 0.96803 1.23241 1.96358 1.05244 1.99056 1.98036 0.89082 0.85042 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -15.67 11.63 55.98 0.65 -15.02 14 2 C 0.05 1.14 5.66 -15.22 -0.09 1.05 14 3 Si 0.92 16.00 29.65 -169.99 -5.04 10.96 14 4 H -0.26 -4.48 7.11 56.52 0.40 -4.07 14 5 H -0.27 -4.54 7.11 56.52 0.40 -4.14 14 6 H -0.25 -4.23 7.11 56.52 0.40 -3.82 14 7 C -0.37 -8.60 9.05 -35.32 -0.32 -8.92 14 8 H 0.12 2.50 6.50 -52.49 -0.34 2.16 14 9 C 0.25 6.20 6.55 -84.96 -0.56 5.65 14 10 N -0.43 -11.17 7.71 -8.08 -0.06 -11.23 14 11 C 0.27 6.58 7.83 -146.47 -1.15 5.44 14 12 N -0.02 -0.41 4.98 32.98 0.16 -0.24 14 13 O -0.21 -4.89 19.13 -31.57 -0.60 -5.50 14 14 O -0.13 -3.38 19.75 -31.56 -0.62 -4.00 14 15 C -0.27 -5.89 9.65 -38.96 -0.38 -6.26 14 16 C 0.00 -0.05 9.93 -39.30 -0.39 -0.44 14 17 C -0.23 -4.89 6.32 -38.35 -0.24 -5.13 14 18 Br -0.07 -1.26 31.94 -68.01 -2.17 -3.44 14 19 H 0.30 6.27 8.27 -40.82 -0.34 5.93 14 20 H 0.13 2.55 7.57 -52.49 -0.40 2.15 14 21 H 0.13 2.11 8.06 -52.49 -0.42 1.68 14 LS Contribution 231.49 15.07 3.49 3.49 Total: -1.00 -26.10 231.49 -7.61 -33.71 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -0.29 Total: -0.11 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -3.12 Total: -8.62 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.75 Total: -26.50 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.23 Total: -9.50 kcal Atomic # 14 Polarization: 16.00 SS G_CDS: -5.04 Total: 10.96 kcal Atomic # 35 Polarization: -1.26 SS G_CDS: -2.17 Total: -3.44 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -26.10 -7.61 -33.71 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307642573.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.742 kcal (2) G-P(sol) polarization free energy of solvation -26.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds