Wall clock time and date at job start Mon Mar 30 2020 06:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29579 * 1 3 3 Si 1.86803 * 120.00164 * 2 1 4 4 H 1.48495 * 109.47163 * 274.99151 * 3 2 1 5 5 H 1.48496 * 109.46899 * 34.99257 * 3 2 1 6 6 H 1.48507 * 109.46833 * 154.98967 * 3 2 1 7 7 C 1.46392 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00168 * 186.01330 * 7 2 1 9 9 C 1.40842 * 119.99799 * 6.00428 * 7 2 1 10 10 N 1.33825 * 119.84945 * 353.81110 * 9 7 2 11 11 C 1.30892 * 121.57313 * 180.28329 * 10 9 7 12 12 N 1.48009 * 119.45750 * 179.74557 * 11 10 9 13 13 O 1.31709 * 119.99627 * 179.97438 * 12 11 10 14 14 O 1.31697 * 120.00330 * 359.97438 * 12 11 10 15 15 C 1.39627 * 121.08035 * 359.72829 * 11 10 9 16 16 C 1.38512 * 119.57669 * 359.97438 * 15 11 10 17 17 C 1.38718 * 118.54243 * 0.02562 * 16 15 11 18 18 Br 1.89094 * 120.54056 * 179.97438 * 17 16 15 19 19 H 0.96998 * 119.99452 * 359.97438 * 1 2 3 20 20 H 1.07996 * 120.21054 * 180.02562 * 15 11 10 21 21 H 1.07995 * 120.72844 * 179.97438 * 16 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2958 0.0000 0.0000 3 14 2.2298 1.6177 0.0000 4 1 2.3719 2.1073 -1.3947 5 1 1.4840 2.6199 0.8029 6 1 3.5762 1.4119 0.5920 7 6 2.0277 -1.2678 -0.0006 8 1 3.1033 -1.2705 0.0974 9 6 1.3293 -2.4841 -0.1287 10 7 -0.0090 -2.4873 -0.1249 11 6 -0.6920 -3.5983 -0.2363 12 7 -2.1711 -3.5481 -0.2209 13 8 -2.8689 -4.6595 -0.3327 14 8 -2.7895 -2.3921 -0.0954 15 6 -0.0480 -4.8300 -0.3697 16 6 1.3361 -4.8797 -0.3853 17 6 2.0434 -3.6923 -0.2661 18 35 3.9342 -3.6946 -0.2798 19 1 -0.4849 0.8401 0.0004 20 1 -0.6255 -5.7380 -0.4610 21 1 1.8534 -5.8222 -0.4872 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307642573.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:16 Heat of formation + Delta-G solvation = 41.238939 kcal Electronic energy + Delta-G solvation = -13117.600821 eV Core-core repulsion = 10429.752534 eV Total energy + Delta-G solvation = -2687.848287 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.04650 -39.39242 -35.82981 -35.47219 -33.87710 -32.88750 -30.83461 -28.71444 -26.87788 -23.89871 -23.10351 -20.27222 -19.43213 -18.88628 -17.12839 -17.03241 -16.77454 -16.41111 -15.22767 -14.77107 -14.35972 -13.34916 -13.17679 -12.99458 -12.98258 -12.52923 -12.22706 -12.14409 -11.99406 -11.80161 -11.49652 -11.01341 -10.58863 -10.22157 -9.99353 -8.79711 -6.94543 -1.65784 0.07319 0.37149 0.60190 0.97631 1.36330 1.43924 1.54653 2.08091 2.37025 3.21775 3.65937 3.85433 4.13892 4.28868 4.63259 4.76412 4.93123 5.11107 5.43772 5.60227 5.90606 6.04892 6.31002 7.28261 7.96851 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.011581 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.816868 B = 2417.131484 C = 4245.204684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.239 1.239 7 C -0.399 4.399 8 H 0.130 0.870 9 C 0.227 3.773 10 N -0.474 5.474 11 C 0.235 3.765 12 N -0.016 5.016 13 O -0.162 6.162 14 O -0.202 6.202 15 C -0.257 4.257 16 C 0.001 3.999 17 C -0.228 4.228 18 Br -0.032 7.032 19 H 0.301 0.699 20 H 0.157 0.843 21 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.502 -2.836 -0.542 9.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.217 4.217 3 Si 0.815 3.185 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.161 1.161 7 C -0.426 4.426 8 H 0.148 0.852 9 C 0.105 3.895 10 N -0.194 5.194 11 C 0.006 3.994 12 N 0.463 4.537 13 O -0.361 6.361 14 O -0.391 6.391 15 C -0.287 4.287 16 C -0.024 4.024 17 C -0.314 4.314 18 Br 0.052 6.948 19 H 0.113 0.887 20 H 0.175 0.825 21 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 10.217 -1.845 -0.448 10.392 hybrid contribution -0.877 -0.060 -0.060 0.881 sum 9.340 -1.905 -0.509 9.546 Atomic orbital electron populations 1.69513 1.10336 1.32249 1.20266 1.28753 0.95502 1.05457 0.91968 0.84942 0.79679 0.73829 0.80094 1.18136 1.18874 1.16128 1.21897 0.96410 0.88373 1.35892 0.85248 1.18357 0.84164 0.93463 0.93469 1.66989 1.08940 1.26064 1.17410 1.21228 0.78198 0.93761 1.06258 1.51050 1.05751 1.01716 0.95178 1.96107 1.66985 1.19252 1.53731 1.96253 1.74112 1.13106 1.55640 1.21149 0.95044 0.95383 1.17077 1.21268 0.91414 0.97747 0.91993 1.22899 0.91152 0.96506 1.20808 1.96378 1.01619 1.98989 1.97826 0.88669 0.82541 0.80812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -34.98 11.63 23.18 0.27 -34.71 14 2 C 0.01 0.65 5.66 87.15 0.49 1.15 14 3 Si 1.00 32.43 29.65 68.60 2.03 34.47 14 4 H -0.26 -8.14 7.11 99.48 0.71 -7.43 14 5 H -0.26 -8.35 7.11 99.48 0.71 -7.64 14 6 H -0.24 -7.21 7.11 99.48 0.71 -6.50 14 7 C -0.40 -18.44 9.05 25.03 0.23 -18.22 14 8 H 0.13 5.40 6.50 -2.91 -0.02 5.38 14 9 C 0.23 11.07 6.55 40.16 0.26 11.33 14 10 N -0.47 -25.27 7.71 -179.47 -1.38 -26.65 14 11 C 0.23 11.57 7.83 130.26 1.02 12.59 14 12 N -0.02 -0.81 4.98 -49.57 -0.25 -1.06 14 13 O -0.16 -7.35 19.13 3.50 0.07 -7.28 14 14 O -0.20 -10.90 19.75 3.52 0.07 -10.83 14 15 C -0.26 -10.40 9.65 22.67 0.22 -10.18 14 16 C 0.00 0.05 9.93 22.45 0.22 0.27 14 17 C -0.23 -9.32 6.32 23.07 0.15 -9.18 14 18 Br -0.03 -1.06 31.94 -20.37 -0.65 -1.71 14 19 H 0.30 13.38 8.27 -92.71 -0.77 12.61 14 20 H 0.16 5.48 7.57 -2.91 -0.02 5.45 14 21 H 0.17 4.76 8.06 -2.91 -0.02 4.73 14 Total: -1.00 -57.45 231.49 4.04 -53.41 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 1.29 Total: 6.60 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 2.59 Total: -12.24 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -1.36 Total: -62.42 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.14 Total: -18.11 kcal Atomic # 14 Polarization: 32.43 SS G_CDS: 2.03 Total: 34.47 kcal Atomic # 35 Polarization: -1.06 SS G_CDS: -0.65 Total: -1.71 kcal Total: -57.45 4.04 -53.41 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307642573.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.649 kcal (2) G-P(sol) polarization free energy of solvation -57.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds