Wall clock time and date at job start Mon Mar 30 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00300 * 2 1 4 4 C 1.52997 * 109.47134 * 180.02562 * 3 2 1 5 5 C 1.53006 * 110.27459 * 59.30126 * 4 3 2 6 6 O 1.42906 * 109.46752 * 299.36115 * 5 4 3 7 7 C 1.42898 * 113.99824 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47174 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47137 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47137 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47167 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00137 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00330 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99914 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00558 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46760 * 59.99306 * 15 13 11 17 17 H 1.48501 * 109.47360 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46761 * 299.99559 * 15 13 11 19 19 C 1.54602 * 110.39435 * 181.44385 * 4 3 2 20 20 C 1.54930 * 102.92114 * 96.99990 * 19 4 3 21 21 N 1.48537 * 103.22670 * 37.41586 * 20 19 4 22 22 C 1.47901 * 105.82189 * 320.79245 * 21 20 19 23 23 H 1.08993 * 109.47147 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46639 * 300.00273 * 1 2 3 25 25 H 1.08999 * 109.46650 * 59.99970 * 1 2 3 26 26 H 1.08994 * 109.47327 * 59.99946 * 3 2 1 27 27 H 1.09001 * 109.47179 * 300.00005 * 3 2 1 28 28 H 1.08993 * 109.46955 * 59.36533 * 5 4 3 29 29 H 1.09000 * 109.47050 * 179.36362 * 5 4 3 30 30 H 1.09008 * 109.46688 * 300.00244 * 7 6 5 31 31 H 1.09002 * 109.47367 * 59.99723 * 7 6 5 32 32 H 1.08995 * 109.46853 * 299.99672 * 8 7 6 33 33 H 1.08998 * 109.47106 * 59.99533 * 8 7 6 34 34 H 1.09008 * 109.46645 * 299.99752 * 9 8 7 35 35 H 1.09002 * 109.47448 * 59.99254 * 9 8 7 36 36 H 1.09003 * 109.46699 * 299.99314 * 10 9 8 37 37 H 1.08998 * 109.47106 * 59.99457 * 10 9 8 38 38 H 0.96995 * 120.00312 * 180.02562 * 14 13 11 39 39 H 1.08998 * 110.72531 * 215.36272 * 19 4 3 40 40 H 1.09000 * 110.72046 * 338.64639 * 19 4 3 41 41 H 1.08998 * 110.67057 * 278.98774 * 20 19 4 42 42 H 1.08998 * 110.81207 * 155.91742 * 20 19 4 43 43 H 1.00900 * 111.00071 * 200.27686 * 21 20 19 44 44 H 1.09000 * 109.91539 * 265.97662 * 22 21 20 45 45 H 1.08996 * 109.91742 * 144.67936 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.0057 0.4124 -1.2351 6 8 3.4454 -0.9021 -1.2166 7 6 3.8244 -1.7111 -2.3319 8 6 3.1698 -3.0885 -2.2086 9 6 3.5761 -3.9550 -3.4024 10 6 2.9220 -5.3326 -3.2788 11 6 3.3226 -6.1861 -4.4543 12 1 3.9779 -5.7860 -5.2138 13 6 2.8518 -7.4777 -4.5607 14 7 2.0535 -7.9649 -3.6361 15 14 3.3479 -8.5356 -6.0182 16 1 4.8248 -8.6892 -6.0384 17 1 2.7131 -9.8727 -5.8982 18 1 2.9005 -7.8859 -7.2764 19 6 4.1871 2.5861 0.0359 20 6 4.4976 2.7847 1.5407 21 7 4.9129 1.4291 1.9838 22 6 4.0167 0.4837 1.2834 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.6888 1.8463 0.8899 27 1 1.6887 1.8464 -0.8900 28 1 3.6801 0.9336 -2.1353 29 1 5.0935 0.3439 -1.2283 30 1 3.4954 -1.2341 -3.2552 31 1 4.9085 -1.8237 -2.3474 32 1 3.4984 -3.5656 -1.2854 33 1 2.0858 -2.9756 -2.1933 34 1 3.2477 -3.4779 -4.3259 35 1 4.6601 -4.0678 -3.4173 36 1 3.2507 -5.8093 -2.3553 37 1 1.8379 -5.2200 -3.2637 38 1 1.7225 -8.8736 -3.7107 39 1 5.1045 2.6004 -0.5525 40 1 3.4891 3.3451 -0.3174 41 1 3.6063 3.1086 2.0780 42 1 5.3089 3.4996 1.6776 43 1 4.8278 1.3340 2.9847 44 1 3.1632 0.2426 1.9170 45 1 4.5619 -0.4250 1.0284 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307896205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:30 Heat of formation + Delta-G solvation = -110.866292 kcal Electronic energy + Delta-G solvation = -21342.998542 eV Core-core repulsion = 18166.864382 eV Total energy + Delta-G solvation = -3176.134160 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.88359 -37.33905 -37.16635 -34.51197 -32.57576 -31.86781 -29.50845 -28.55750 -27.16117 -25.53076 -24.78711 -24.26817 -21.88694 -21.49065 -20.01803 -19.28800 -16.91658 -16.60996 -16.19180 -16.02210 -15.99062 -15.79663 -15.14945 -14.57594 -14.41306 -14.05255 -13.91321 -13.32695 -12.83278 -12.61397 -12.50666 -12.25834 -11.99219 -11.92345 -11.85409 -11.59188 -11.20971 -11.18168 -11.01140 -10.86224 -10.66589 -10.52062 -10.47395 -10.26659 -9.64101 -9.57759 -9.23112 -9.21733 -8.98494 -8.75246 -8.28134 -5.93409 -3.95653 3.37150 3.41111 3.43760 3.58091 3.82171 4.02474 4.39533 4.50998 4.59957 4.71988 4.88249 4.93131 5.09965 5.15919 5.26681 5.32533 5.37529 5.41151 5.41797 5.43960 5.49607 5.54006 5.65338 5.70654 5.71846 5.77068 5.85802 5.93923 6.08343 6.24343 6.30054 6.50926 6.60913 6.90850 7.04363 7.05063 7.17377 7.20936 7.59622 7.75938 7.92505 8.08110 8.50427 9.11686 9.67796 11.17980 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.031889 B = 0.002948 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.842422 B = 9497.142954 C = 9885.436532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.355 6.355 3 C 0.077 3.923 4 C -0.065 4.065 5 C 0.080 3.920 6 O -0.362 6.362 7 C 0.063 3.937 8 C -0.112 4.112 9 C -0.108 4.108 10 C 0.022 3.978 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.111 4.111 20 C 0.037 3.963 21 N -0.676 5.676 22 C 0.059 3.941 23 H 0.088 0.912 24 H 0.032 0.968 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.039 0.961 42 H 0.082 0.918 43 H 0.337 0.663 44 H 0.048 0.952 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.083 24.279 10.297 26.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.000 4.000 4 C -0.066 4.066 5 C 0.003 3.997 6 O -0.281 6.281 7 C -0.014 4.014 8 C -0.149 4.149 9 C -0.146 4.146 10 C -0.015 4.015 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.149 4.149 20 C -0.092 4.092 21 N -0.305 5.305 22 C -0.070 4.070 23 H 0.106 0.894 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.101 0.899 43 H 0.152 0.848 44 H 0.066 0.934 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.554 23.791 10.056 25.876 hybrid contribution -0.762 -0.173 -0.561 0.962 sum 0.792 23.618 9.495 25.468 Atomic orbital electron populations 1.22732 0.81893 1.02977 0.99035 1.88182 1.18448 1.25660 1.95021 1.22459 0.92307 0.85942 0.99309 1.21494 0.93807 0.95207 0.96101 1.22322 0.96705 0.85066 0.95643 1.88084 1.71801 1.22803 1.45370 1.22629 0.98054 0.92368 0.88305 1.21564 1.00751 0.92254 1.00344 1.21580 0.99996 0.97747 0.95231 1.19076 0.95816 0.89623 0.96979 1.21256 1.29119 0.97690 1.07820 0.92810 1.25033 0.95216 0.98015 0.96261 1.69962 1.33514 1.16087 1.34008 0.86668 0.78747 0.79532 0.83100 1.20267 1.21310 1.20291 1.22496 1.01032 0.94554 0.96846 1.23020 0.99098 0.92185 0.94889 1.63135 1.52952 1.03175 1.11257 1.22617 0.94944 0.96215 0.93231 0.89353 0.94939 0.94505 0.94093 0.93575 0.93987 0.93320 0.94217 0.94133 0.91860 0.91800 0.93517 0.93462 0.96560 0.96599 0.93005 0.89825 0.90642 0.94222 0.89930 0.84754 0.93396 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.36 -4.70 8.39 -56.82 -0.48 -5.18 16 3 C 0.08 0.80 4.52 37.16 0.17 0.97 16 4 C -0.07 -0.68 0.67 -153.15 -0.10 -0.78 16 5 C 0.08 0.97 4.55 37.16 0.17 1.14 16 6 O -0.36 -5.61 7.94 -56.82 -0.45 -6.06 16 7 C 0.06 1.00 5.94 37.16 0.22 1.22 16 8 C -0.11 -2.10 5.58 -26.73 -0.15 -2.25 16 9 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 10 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 11 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -27.69 13.29 55.43 0.74 -26.96 16 15 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 C -0.11 -0.87 6.16 -24.87 -0.15 -1.02 16 20 C 0.04 0.28 7.55 -1.90 -0.01 0.26 16 21 N -0.68 -6.34 7.51 -110.09 -0.83 -7.17 16 22 C 0.06 0.65 6.44 -2.75 -0.02 0.64 16 23 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 39 H 0.08 0.65 7.86 -51.93 -0.41 0.25 16 40 H 0.07 0.47 7.86 -51.93 -0.41 0.06 16 41 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.34 2.64 8.92 -39.29 -0.35 2.29 16 44 H 0.05 0.55 7.54 -51.93 -0.39 0.16 16 45 H 0.09 1.19 7.45 -51.93 -0.39 0.80 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -32.28 359.18 -8.75 -41.03 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -8.67 Total: -3.80 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 0.55 Total: -14.40 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.09 Total: -34.12 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.93 Total: -11.24 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.28 -8.75 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307896205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.836 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds