Wall clock time and date at job start Mon Mar 30 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00300 * 2 1 4 4 C 1.52997 * 109.47134 * 180.02562 * 3 2 1 5 5 C 1.53006 * 110.27459 * 59.30126 * 4 3 2 6 6 O 1.42906 * 109.46752 * 299.36115 * 5 4 3 7 7 C 1.42898 * 113.99824 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47174 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47137 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47137 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47167 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00137 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00330 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99914 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00558 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46760 * 59.99306 * 15 13 11 17 17 H 1.48501 * 109.47360 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46761 * 299.99559 * 15 13 11 19 19 C 1.54602 * 110.39435 * 181.44385 * 4 3 2 20 20 C 1.54930 * 102.92114 * 96.99990 * 19 4 3 21 21 N 1.48537 * 103.22670 * 37.41586 * 20 19 4 22 22 C 1.47901 * 105.82189 * 320.79245 * 21 20 19 23 23 H 1.08993 * 109.47147 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46639 * 300.00273 * 1 2 3 25 25 H 1.08999 * 109.46650 * 59.99970 * 1 2 3 26 26 H 1.08994 * 109.47327 * 59.99946 * 3 2 1 27 27 H 1.09001 * 109.47179 * 300.00005 * 3 2 1 28 28 H 1.08993 * 109.46955 * 59.36533 * 5 4 3 29 29 H 1.09000 * 109.47050 * 179.36362 * 5 4 3 30 30 H 1.09008 * 109.46688 * 300.00244 * 7 6 5 31 31 H 1.09002 * 109.47367 * 59.99723 * 7 6 5 32 32 H 1.08995 * 109.46853 * 299.99672 * 8 7 6 33 33 H 1.08998 * 109.47106 * 59.99533 * 8 7 6 34 34 H 1.09008 * 109.46645 * 299.99752 * 9 8 7 35 35 H 1.09002 * 109.47448 * 59.99254 * 9 8 7 36 36 H 1.09003 * 109.46699 * 299.99314 * 10 9 8 37 37 H 1.08998 * 109.47106 * 59.99457 * 10 9 8 38 38 H 0.96995 * 120.00312 * 180.02562 * 14 13 11 39 39 H 1.08998 * 110.72531 * 215.36272 * 19 4 3 40 40 H 1.09000 * 110.72046 * 338.64639 * 19 4 3 41 41 H 1.08998 * 110.67057 * 278.98774 * 20 19 4 42 42 H 1.08998 * 110.81207 * 155.91742 * 20 19 4 43 43 H 1.00900 * 111.00071 * 200.27686 * 21 20 19 44 44 H 1.09000 * 109.91539 * 265.97662 * 22 21 20 45 45 H 1.08996 * 109.91742 * 144.67936 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.0057 0.4124 -1.2351 6 8 3.4454 -0.9021 -1.2166 7 6 3.8244 -1.7111 -2.3319 8 6 3.1698 -3.0885 -2.2086 9 6 3.5761 -3.9550 -3.4024 10 6 2.9220 -5.3326 -3.2788 11 6 3.3226 -6.1861 -4.4543 12 1 3.9779 -5.7860 -5.2138 13 6 2.8518 -7.4777 -4.5607 14 7 2.0535 -7.9649 -3.6361 15 14 3.3479 -8.5356 -6.0182 16 1 4.8248 -8.6892 -6.0384 17 1 2.7131 -9.8727 -5.8982 18 1 2.9005 -7.8859 -7.2764 19 6 4.1871 2.5861 0.0359 20 6 4.4976 2.7847 1.5407 21 7 4.9129 1.4291 1.9838 22 6 4.0167 0.4837 1.2834 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.6888 1.8463 0.8899 27 1 1.6887 1.8464 -0.8900 28 1 3.6801 0.9336 -2.1353 29 1 5.0935 0.3439 -1.2283 30 1 3.4954 -1.2341 -3.2552 31 1 4.9085 -1.8237 -2.3474 32 1 3.4984 -3.5656 -1.2854 33 1 2.0858 -2.9756 -2.1933 34 1 3.2477 -3.4779 -4.3259 35 1 4.6601 -4.0678 -3.4173 36 1 3.2507 -5.8093 -2.3553 37 1 1.8379 -5.2200 -3.2637 38 1 1.7225 -8.8736 -3.7107 39 1 5.1045 2.6004 -0.5525 40 1 3.4891 3.3451 -0.3174 41 1 3.6063 3.1086 2.0780 42 1 5.3089 3.4996 1.6776 43 1 4.8278 1.3340 2.9847 44 1 3.1632 0.2426 1.9170 45 1 4.5619 -0.4250 1.0284 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307896205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:30 Heat of formation + Delta-G solvation = -132.025151 kcal Electronic energy + Delta-G solvation = -21343.916059 eV Core-core repulsion = 18166.864382 eV Total energy + Delta-G solvation = -3177.051677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69723 -38.50350 -38.00636 -36.34300 -34.37262 -32.98939 -30.58009 -29.98480 -28.04798 -26.82234 -26.00864 -25.40991 -23.35754 -22.40885 -21.79207 -20.14366 -18.43034 -17.70275 -17.44545 -17.12045 -17.07919 -16.75649 -16.49125 -16.13855 -15.47548 -15.29271 -14.89864 -14.52487 -14.22241 -14.04142 -13.70621 -13.40895 -13.18509 -13.09229 -12.83290 -12.69690 -12.62323 -12.50116 -12.33365 -12.27942 -12.03551 -11.91848 -11.72228 -11.44312 -11.39637 -11.31882 -11.05731 -10.54911 -10.48967 -10.35242 -9.47193 -8.19308 -6.31338 1.39822 1.43817 1.51711 2.41175 2.69319 2.90718 3.13202 3.33178 3.62587 3.85716 3.86856 4.09774 4.13054 4.25127 4.28045 4.37662 4.43123 4.49008 4.50959 4.54870 4.57770 4.60739 4.65473 4.68430 4.78920 4.80413 4.89846 4.91156 4.97713 5.05149 5.14987 5.19778 5.21276 5.26706 5.32170 5.53763 5.76238 5.79878 5.86113 6.24988 6.35299 6.39667 6.48534 6.85886 7.37940 8.92715 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.031889 B = 0.002948 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.842422 B = 9497.142954 C = 9885.436532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.389 6.389 3 C 0.075 3.925 4 C -0.066 4.066 5 C 0.075 3.925 6 O -0.379 6.379 7 C 0.072 3.928 8 C -0.102 4.102 9 C -0.094 4.094 10 C 0.024 3.976 11 C -0.546 4.546 12 H 0.062 0.938 13 C -0.004 4.004 14 N -0.936 5.936 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.265 1.265 19 C -0.105 4.105 20 C 0.038 3.962 21 N -0.685 5.685 22 C 0.064 3.936 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.054 0.946 36 H -0.012 1.012 37 H -0.011 1.011 38 H 0.264 0.736 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.096 0.904 43 H 0.344 0.656 44 H 0.038 0.962 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 26.130 9.366 27.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.307 6.307 3 C -0.002 4.002 4 C -0.067 4.067 5 C -0.002 4.002 6 O -0.299 6.299 7 C -0.004 4.004 8 C -0.140 4.140 9 C -0.132 4.132 10 C -0.013 4.013 11 C -0.584 4.584 12 H 0.080 0.920 13 C -0.201 4.201 14 N -0.576 5.576 15 Si 0.792 3.208 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.190 1.190 19 C -0.143 4.143 20 C -0.091 4.091 21 N -0.315 5.315 22 C -0.066 4.066 23 H 0.096 0.904 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.007 0.993 37 H 0.008 0.992 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.161 0.839 44 H 0.056 0.944 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.305 25.672 9.133 27.346 hybrid contribution -1.009 -0.724 -0.195 1.257 sum 1.295 24.948 8.938 26.533 Atomic orbital electron populations 1.22795 0.80957 1.02800 1.00311 1.88136 1.19742 1.27583 1.95280 1.22585 0.92023 0.85081 1.00463 1.21562 0.94167 0.96362 0.94620 1.22534 0.96778 0.83685 0.97164 1.88063 1.72317 1.24404 1.45078 1.22397 0.98123 0.90837 0.89089 1.21366 1.00300 0.93884 0.98471 1.21362 0.99826 0.95151 0.96831 1.19000 0.94492 0.92522 0.95310 1.21712 1.29500 0.98571 1.08614 0.91950 1.26053 0.94942 0.99603 0.99510 1.70109 1.34591 1.16676 1.36204 0.85456 0.78830 0.77369 0.79119 1.19058 1.20789 1.18994 1.22529 1.01332 0.93233 0.97241 1.23114 1.00138 0.91191 0.94627 1.63098 1.52636 1.03998 1.11807 1.22432 0.94376 0.95835 0.93907 0.90373 0.93152 0.93654 0.92621 0.92526 0.92786 0.93196 0.93031 0.93197 0.93072 0.92848 0.92606 0.92697 0.99334 0.99244 0.92744 0.89712 0.88505 0.93058 0.88555 0.83942 0.94356 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.39 -10.14 8.39 -128.33 -1.08 -11.21 16 3 C 0.08 1.44 4.52 71.98 0.33 1.77 16 4 C -0.07 -1.28 0.67 -51.30 -0.03 -1.32 16 5 C 0.08 1.74 4.55 71.98 0.33 2.07 16 6 O -0.38 -11.65 7.94 -128.33 -1.02 -12.67 16 7 C 0.07 2.24 5.94 71.98 0.43 2.67 16 8 C -0.10 -3.91 5.58 30.59 0.17 -3.74 16 9 C -0.09 -4.08 5.15 30.59 0.16 -3.93 16 10 C 0.02 1.33 4.97 29.85 0.15 1.48 16 11 C -0.55 -32.29 9.11 25.60 0.23 -32.06 16 12 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 13 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 14 N -0.94 -58.92 13.29 21.45 0.28 -58.63 16 15 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 C -0.11 -1.37 6.16 31.80 0.20 -1.17 16 20 C 0.04 0.47 7.55 86.65 0.65 1.13 16 21 N -0.69 -12.03 7.51 -502.21 -3.77 -15.80 16 22 C 0.06 1.41 6.44 86.45 0.56 1.96 16 23 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 30 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 36 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 37 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.08 1.10 7.86 -2.39 -0.02 1.08 16 40 H 0.10 0.86 7.86 -2.39 -0.02 0.85 16 41 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.34 5.05 8.92 -89.69 -0.80 4.25 16 44 H 0.04 0.89 7.54 -2.39 -0.02 0.87 16 45 H 0.06 1.65 7.45 -2.39 -0.02 1.63 16 Total: -1.00 -70.12 359.18 1.44 -68.67 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.12 Total: 11.43 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 4.87 Total: -29.08 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -3.49 Total: -74.43 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -2.10 Total: -23.88 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -70.12 1.44 -68.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307896205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.351 kcal (2) G-P(sol) polarization free energy of solvation -70.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds