Wall clock time and date at job start Mon Mar 30 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00255 * 2 1 4 4 C 1.53004 * 109.46957 * 179.97438 * 3 2 1 5 5 C 1.52999 * 110.28718 * 300.69618 * 4 3 2 6 6 O 1.42899 * 109.46889 * 57.87476 * 5 4 3 7 7 C 1.42905 * 113.99778 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46728 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.46997 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47481 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47432 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99822 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00335 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99985 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00296 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46755 * 90.00312 * 15 13 11 17 17 H 1.48499 * 109.47293 * 210.00321 * 15 13 11 18 18 H 1.48496 * 109.47209 * 330.00359 * 15 13 11 19 19 C 1.54263 * 110.32290 * 178.57276 * 4 3 2 20 20 C 1.54381 * 105.06120 * 241.00448 * 19 4 3 21 21 N 1.48566 * 104.59518 * 23.84758 * 20 19 4 22 22 C 1.48559 * 104.22250 * 320.52181 * 21 20 19 23 23 H 1.08999 * 109.47205 * 300.00704 * 1 2 3 24 24 H 1.09007 * 109.46838 * 60.00505 * 1 2 3 25 25 H 1.08997 * 109.47536 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47267 * 59.99751 * 3 2 1 27 27 H 1.08999 * 109.46692 * 299.99607 * 3 2 1 28 28 H 1.08997 * 109.47286 * 297.87459 * 5 4 3 29 29 H 1.08997 * 109.46848 * 177.87557 * 5 4 3 30 30 H 1.09000 * 109.47187 * 300.00233 * 7 6 5 31 31 H 1.09001 * 109.46558 * 60.00281 * 7 6 5 32 32 H 1.09000 * 109.47486 * 300.00062 * 8 7 6 33 33 H 1.09001 * 109.47362 * 60.00784 * 8 7 6 34 34 H 1.09000 * 109.46866 * 300.00212 * 9 8 7 35 35 H 1.08996 * 109.47261 * 59.99820 * 9 8 7 36 36 H 1.09004 * 109.46672 * 300.00239 * 10 9 8 37 37 H 1.08996 * 109.47340 * 59.99477 * 10 9 8 38 38 H 0.96996 * 119.99943 * 179.97438 * 14 13 11 39 39 H 1.09007 * 110.31987 * 359.89801 * 19 4 3 40 40 H 1.08992 * 110.32606 * 122.00063 * 19 4 3 41 41 H 1.08997 * 110.41461 * 142.63037 * 20 19 4 42 42 H 1.09006 * 110.40681 * 265.07465 * 20 19 4 43 43 H 1.00902 * 110.99737 * 80.07883 * 21 20 19 44 44 H 1.08998 * 110.41234 * 280.70607 * 22 21 20 45 45 H 1.08994 * 110.41405 * 158.26046 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.0059 0.4125 1.2350 6 8 3.3951 -0.8793 1.2502 7 6 3.7701 -1.6864 2.3683 8 6 3.0599 -3.0388 2.2820 9 6 3.4609 -3.9027 3.4795 10 6 2.7513 -5.2554 3.3930 11 6 3.1467 -6.1065 4.5720 12 1 3.8357 -5.7213 5.3091 13 6 2.6290 -7.3769 4.7097 14 7 1.7904 -7.8462 3.8118 15 14 3.1198 -8.4322 6.1709 16 1 2.1757 -8.1946 7.2923 17 1 3.0772 -9.8651 5.7832 18 1 4.4964 -8.0759 6.5987 19 6 4.1839 2.5838 -0.0354 20 6 5.0062 2.6113 -1.3417 21 7 4.3599 1.5958 -2.2124 22 6 4.0206 0.4843 -1.2869 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8462 -0.8900 28 1 3.7232 0.9588 2.1348 29 1 5.0898 0.3015 1.2028 30 1 4.8491 -1.8409 2.3593 31 1 3.4827 -1.1837 3.2918 32 1 1.9810 -2.8839 2.2913 33 1 3.3469 -3.5416 1.3585 34 1 4.5398 -4.0576 3.4706 35 1 3.1737 -3.3998 4.4028 36 1 1.6723 -5.1007 3.4015 37 1 3.0388 -5.7581 2.4696 38 1 1.4264 -8.7401 3.9085 39 1 3.4155 3.3566 -0.0553 40 1 4.8359 2.7212 0.8272 41 1 4.9532 3.5972 -1.8035 42 1 6.0429 2.3383 -1.1441 43 1 3.5303 1.9690 -2.6488 44 1 4.9030 -0.1215 -1.0807 45 1 3.2256 -0.1313 -1.7075 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307896206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:34 Heat of formation + Delta-G solvation = -111.709074 kcal Electronic energy + Delta-G solvation = -21367.070627 eV Core-core repulsion = 18190.899922 eV Total energy + Delta-G solvation = -3176.170706 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.99313 -37.37318 -37.20823 -34.52837 -32.52643 -31.76482 -29.46188 -28.60122 -27.13630 -25.56308 -24.80164 -24.21547 -22.05436 -21.56182 -20.03301 -19.28327 -17.07467 -16.41426 -16.24975 -16.15475 -15.90692 -15.70297 -14.93863 -14.89851 -14.40362 -14.17264 -13.97672 -13.28424 -13.04397 -12.71925 -12.32769 -12.29247 -12.02202 -11.87323 -11.65763 -11.42071 -11.25834 -11.21690 -11.04107 -10.92122 -10.67798 -10.56850 -10.46163 -10.28778 -9.65237 -9.59627 -9.27308 -9.24653 -8.98754 -8.93109 -8.29389 -5.94528 -3.96743 3.34874 3.40780 3.44361 3.56176 3.79339 4.00423 4.49630 4.51986 4.58819 4.61221 4.91934 4.93592 5.02796 5.17134 5.25978 5.30412 5.35209 5.37782 5.40750 5.43098 5.45039 5.53128 5.60345 5.67250 5.72414 5.75958 5.85826 5.91110 6.03922 6.22053 6.27828 6.40497 6.58920 6.88944 7.02583 7.05109 7.16538 7.19583 7.56216 7.75009 7.91151 8.06967 8.49263 9.10766 9.66830 11.16878 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.032242 B = 0.002952 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.228637 B = 9483.658217 C = 9890.807552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.354 6.354 3 C 0.080 3.920 4 C -0.091 4.091 5 C 0.081 3.919 6 O -0.359 6.359 7 C 0.062 3.938 8 C -0.111 4.111 9 C -0.108 4.108 10 C 0.022 3.978 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.146 4.146 20 C 0.040 3.960 21 N -0.672 5.672 22 C 0.060 3.940 23 H 0.036 0.964 24 H 0.033 0.967 25 H 0.088 0.912 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.334 0.666 44 H 0.083 0.917 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 24.018 -9.813 26.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.002 3.998 4 C -0.093 4.093 5 C 0.003 3.997 6 O -0.278 6.278 7 C -0.014 4.014 8 C -0.149 4.149 9 C -0.146 4.146 10 C -0.015 4.015 11 C -0.558 4.558 12 H 0.072 0.928 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.185 4.185 20 C -0.090 4.090 21 N -0.297 5.297 22 C -0.070 4.070 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.149 0.851 44 H 0.101 0.899 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.596 23.324 -10.343 25.647 hybrid contribution -0.659 0.120 1.735 1.860 sum 1.936 23.444 -8.608 25.049 Atomic orbital electron populations 1.22731 0.81873 1.02997 0.99027 1.88175 1.18450 1.25607 1.94990 1.22395 0.92275 0.85940 0.99153 1.22012 0.94368 0.95182 0.97704 1.22320 0.96005 0.85657 0.95689 1.88110 1.68987 1.24757 1.45953 1.22637 0.98084 0.92473 0.88211 1.21564 1.00443 0.92529 1.00355 1.21578 1.00064 0.97758 0.95151 1.19080 0.95560 0.89878 0.97014 1.21288 1.26715 0.99267 1.08556 0.92771 1.25036 0.95218 0.97971 0.96330 1.69975 1.31327 1.17415 1.34818 0.86607 0.78908 0.79654 0.82901 1.20719 1.21232 1.19912 1.22903 0.99955 0.95189 1.00457 1.23019 0.99193 0.95843 0.90927 1.63307 1.29557 1.08736 1.28114 1.23010 1.01267 0.93752 0.88943 0.94571 0.94882 0.89338 0.93801 0.94169 0.94124 0.93653 0.94169 0.94254 0.91801 0.91802 0.93476 0.93533 0.96597 0.96533 0.93055 0.91065 0.90356 0.90776 0.90097 0.85080 0.89862 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.35 -4.61 8.01 -57.31 -0.46 -5.07 16 3 C 0.08 0.81 4.60 37.16 0.17 0.98 16 4 C -0.09 -0.89 0.73 -153.12 -0.11 -1.00 16 5 C 0.08 0.95 4.52 37.16 0.17 1.12 16 6 O -0.36 -5.46 8.09 -57.31 -0.46 -5.92 16 7 C 0.06 0.98 5.94 37.16 0.22 1.20 16 8 C -0.11 -2.07 5.58 -26.73 -0.15 -2.22 16 9 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 10 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 11 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 12 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 15 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.15 -1.05 6.30 -25.35 -0.16 -1.21 16 20 C 0.04 0.29 7.47 -2.18 -0.02 0.27 16 21 N -0.67 -6.06 7.62 -109.66 -0.84 -6.89 16 22 C 0.06 0.64 6.28 -2.18 -0.01 0.62 16 23 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.07 0.44 7.71 -51.93 -0.40 0.04 16 40 H 0.08 0.52 7.71 -51.93 -0.40 0.12 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.33 2.59 8.92 -39.29 -0.35 2.24 16 44 H 0.08 0.99 7.83 -51.93 -0.41 0.58 16 45 H 0.09 1.05 7.38 -51.93 -0.38 0.67 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -31.97 358.96 -8.77 -40.74 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -8.67 Total: -3.67 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 0.53 Total: -14.78 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: -0.10 Total: -33.77 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.92 Total: -10.98 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.97 -8.77 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307896206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.973 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds