Wall clock time and date at job start Mon Mar 30 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00255 * 2 1 4 4 C 1.53004 * 109.46957 * 179.97438 * 3 2 1 5 5 C 1.52999 * 110.28718 * 300.69618 * 4 3 2 6 6 O 1.42899 * 109.46889 * 57.87476 * 5 4 3 7 7 C 1.42905 * 113.99778 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46728 * 179.97438 * 7 6 5 9 9 C 1.53006 * 109.46997 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47481 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47432 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99822 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00335 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99985 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00296 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46755 * 90.00312 * 15 13 11 17 17 H 1.48499 * 109.47293 * 210.00321 * 15 13 11 18 18 H 1.48496 * 109.47209 * 330.00359 * 15 13 11 19 19 C 1.54263 * 110.32290 * 178.57276 * 4 3 2 20 20 C 1.54381 * 105.06120 * 241.00448 * 19 4 3 21 21 N 1.48566 * 104.59518 * 23.84758 * 20 19 4 22 22 C 1.48559 * 104.22250 * 320.52181 * 21 20 19 23 23 H 1.08999 * 109.47205 * 300.00704 * 1 2 3 24 24 H 1.09007 * 109.46838 * 60.00505 * 1 2 3 25 25 H 1.08997 * 109.47536 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47267 * 59.99751 * 3 2 1 27 27 H 1.08999 * 109.46692 * 299.99607 * 3 2 1 28 28 H 1.08997 * 109.47286 * 297.87459 * 5 4 3 29 29 H 1.08997 * 109.46848 * 177.87557 * 5 4 3 30 30 H 1.09000 * 109.47187 * 300.00233 * 7 6 5 31 31 H 1.09001 * 109.46558 * 60.00281 * 7 6 5 32 32 H 1.09000 * 109.47486 * 300.00062 * 8 7 6 33 33 H 1.09001 * 109.47362 * 60.00784 * 8 7 6 34 34 H 1.09000 * 109.46866 * 300.00212 * 9 8 7 35 35 H 1.08996 * 109.47261 * 59.99820 * 9 8 7 36 36 H 1.09004 * 109.46672 * 300.00239 * 10 9 8 37 37 H 1.08996 * 109.47340 * 59.99477 * 10 9 8 38 38 H 0.96996 * 119.99943 * 179.97438 * 14 13 11 39 39 H 1.09007 * 110.31987 * 359.89801 * 19 4 3 40 40 H 1.08992 * 110.32606 * 122.00063 * 19 4 3 41 41 H 1.08997 * 110.41461 * 142.63037 * 20 19 4 42 42 H 1.09006 * 110.40681 * 265.07465 * 20 19 4 43 43 H 1.00902 * 110.99737 * 80.07883 * 21 20 19 44 44 H 1.08998 * 110.41234 * 280.70607 * 22 21 20 45 45 H 1.08994 * 110.41405 * 158.26046 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.0059 0.4125 1.2350 6 8 3.3951 -0.8793 1.2502 7 6 3.7701 -1.6864 2.3683 8 6 3.0599 -3.0388 2.2820 9 6 3.4609 -3.9027 3.4795 10 6 2.7513 -5.2554 3.3930 11 6 3.1467 -6.1065 4.5720 12 1 3.8357 -5.7213 5.3091 13 6 2.6290 -7.3769 4.7097 14 7 1.7904 -7.8462 3.8118 15 14 3.1198 -8.4322 6.1709 16 1 2.1757 -8.1946 7.2923 17 1 3.0772 -9.8651 5.7832 18 1 4.4964 -8.0759 6.5987 19 6 4.1839 2.5838 -0.0354 20 6 5.0062 2.6113 -1.3417 21 7 4.3599 1.5958 -2.2124 22 6 4.0206 0.4843 -1.2869 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8462 -0.8900 28 1 3.7232 0.9588 2.1348 29 1 5.0898 0.3015 1.2028 30 1 4.8491 -1.8409 2.3593 31 1 3.4827 -1.1837 3.2918 32 1 1.9810 -2.8839 2.2913 33 1 3.3469 -3.5416 1.3585 34 1 4.5398 -4.0576 3.4706 35 1 3.1737 -3.3998 4.4028 36 1 1.6723 -5.1007 3.4015 37 1 3.0388 -5.7581 2.4696 38 1 1.4264 -8.7401 3.9085 39 1 3.4155 3.3566 -0.0553 40 1 4.8359 2.7212 0.8272 41 1 4.9532 3.5972 -1.8035 42 1 6.0429 2.3383 -1.1441 43 1 3.5303 1.9690 -2.6488 44 1 4.9030 -0.1215 -1.0807 45 1 3.2256 -0.1313 -1.7075 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307896206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:33 Heat of formation + Delta-G solvation = -132.589311 kcal Electronic energy + Delta-G solvation = -21367.976062 eV Core-core repulsion = 18190.899922 eV Total energy + Delta-G solvation = -3177.076141 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77554 -38.52122 -38.03328 -36.34840 -34.36869 -32.82192 -30.49667 -30.00653 -28.02067 -26.81757 -26.05304 -25.31432 -23.35821 -22.60867 -21.79697 -20.09834 -18.43421 -17.88334 -17.30972 -17.16453 -16.95200 -16.68858 -16.49264 -15.99170 -15.70087 -15.32297 -14.81190 -14.62510 -14.15477 -14.11022 -13.72752 -13.47104 -13.38054 -12.88766 -12.80967 -12.67733 -12.67040 -12.35757 -12.29452 -12.09509 -12.05435 -11.93691 -11.72243 -11.45474 -11.39331 -11.31819 -11.05531 -10.55789 -10.50243 -10.36665 -9.62875 -8.19803 -6.31724 1.39654 1.41813 1.53000 2.40764 2.68163 2.92711 3.12845 3.30346 3.77390 3.82382 3.85222 4.09767 4.15734 4.25885 4.31561 4.34745 4.40121 4.49677 4.51210 4.55028 4.59453 4.60283 4.64077 4.67796 4.72577 4.81172 4.89900 4.90811 4.98915 5.07216 5.17958 5.19342 5.20680 5.26399 5.31969 5.53565 5.71785 5.75833 5.85856 6.24595 6.35302 6.42528 6.47904 6.85712 7.37635 8.92399 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.032242 B = 0.002952 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.228637 B = 9483.658217 C = 9890.807552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.386 6.386 3 C 0.077 3.923 4 C -0.089 4.089 5 C 0.075 3.925 6 O -0.378 6.378 7 C 0.072 3.928 8 C -0.102 4.102 9 C -0.094 4.094 10 C 0.023 3.977 11 C -0.545 4.545 12 H 0.062 0.938 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.968 3.032 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.262 1.262 19 C -0.137 4.137 20 C 0.041 3.959 21 N -0.679 5.679 22 C 0.064 3.936 23 H 0.042 0.958 24 H 0.051 0.949 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.055 0.945 36 H -0.011 1.011 37 H -0.011 1.011 38 H 0.264 0.736 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.342 0.658 44 H 0.066 0.934 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 25.833 -8.891 27.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.305 6.305 3 C 0.000 4.000 4 C -0.091 4.091 5 C -0.002 4.002 6 O -0.297 6.297 7 C -0.005 4.005 8 C -0.140 4.140 9 C -0.132 4.132 10 C -0.014 4.014 11 C -0.583 4.583 12 H 0.080 0.920 13 C -0.201 4.201 14 N -0.576 5.576 15 Si 0.792 3.208 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.186 1.186 19 C -0.176 4.176 20 C -0.089 4.089 21 N -0.306 5.306 22 C -0.066 4.066 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.158 0.842 44 H 0.084 0.916 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.555 25.169 -9.427 27.111 hybrid contribution -0.980 -0.420 1.372 1.737 sum 2.575 24.750 -8.056 26.155 Atomic orbital electron populations 1.22786 0.81057 1.02767 1.00235 1.88132 1.19621 1.27520 1.95231 1.22533 0.92230 0.85049 1.00155 1.22058 0.94486 0.96369 0.96191 1.22559 0.96328 0.84265 0.97075 1.88089 1.69657 1.26337 1.45591 1.22399 0.98082 0.90986 0.89012 1.21365 1.00091 0.94107 0.98449 1.21359 0.99737 0.95282 0.96792 1.19004 0.94432 0.92615 0.95318 1.21735 1.27082 1.00119 1.09335 0.91969 1.26053 0.94954 0.99545 0.99588 1.70118 1.32418 1.18047 1.36993 0.85399 0.79142 0.77421 0.78791 1.19648 1.20705 1.18579 1.22872 1.00285 0.93654 1.00747 1.23084 0.98765 0.96253 0.90782 1.63269 1.30080 1.09008 1.28241 1.22815 0.99743 0.94138 0.89877 0.93920 0.93032 0.90400 0.93193 0.92563 0.93154 0.92984 0.93084 0.93172 0.92921 0.92991 0.92679 0.92656 0.99266 0.99292 0.92753 0.89428 0.89452 0.88676 0.90464 0.84204 0.91584 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.39 -9.95 8.01 -127.87 -1.02 -10.98 16 3 C 0.08 1.45 4.60 71.98 0.33 1.78 16 4 C -0.09 -1.62 0.73 -51.28 -0.04 -1.66 16 5 C 0.07 1.64 4.52 71.98 0.33 1.97 16 6 O -0.38 -11.28 8.09 -127.87 -1.03 -12.31 16 7 C 0.07 2.19 5.94 71.98 0.43 2.62 16 8 C -0.10 -3.87 5.58 30.60 0.17 -3.70 16 9 C -0.09 -4.05 5.15 30.59 0.16 -3.90 16 10 C 0.02 1.30 4.97 29.84 0.15 1.45 16 11 C -0.54 -32.10 9.11 25.60 0.23 -31.87 16 12 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 13 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 14 N -0.94 -58.77 13.29 21.45 0.28 -58.49 16 15 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 19 C -0.14 -1.59 6.30 31.49 0.20 -1.40 16 20 C 0.04 0.49 7.47 86.45 0.65 1.14 16 21 N -0.68 -11.34 7.62 -500.84 -3.82 -15.16 16 22 C 0.06 1.35 6.28 86.45 0.54 1.89 16 23 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 36 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.09 0.78 7.71 -2.38 -0.02 0.76 16 40 H 0.09 0.90 7.71 -2.39 -0.02 0.88 16 41 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.34 4.75 8.92 -89.69 -0.80 3.95 16 44 H 0.07 1.59 7.83 -2.39 -0.02 1.57 16 45 H 0.07 1.65 7.38 -2.39 -0.02 1.64 16 Total: -1.00 -69.46 358.96 1.41 -68.05 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.12 Total: 11.30 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 4.85 Total: -29.62 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -3.53 Total: -73.65 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -2.06 Total: -23.29 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.46 1.41 -68.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307896206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.536 kcal (2) G-P(sol) polarization free energy of solvation -69.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds