Wall clock time and date at job start Mon Mar 30 2020 06:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00324 * 2 1 4 4 H 1.48505 * 109.47138 * 240.00290 * 3 2 1 5 5 H 1.48498 * 109.47295 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47347 * 120.00287 * 3 2 1 7 7 C 1.38815 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99878 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00035 * 359.97438 * 7 2 1 10 10 S 1.65608 * 119.99784 * 180.02562 * 9 7 2 11 11 O 1.42104 * 106.39724 * 178.53880 * 10 9 7 12 12 O 1.42097 * 106.40199 * 311.45791 * 10 9 7 13 13 C 1.76195 * 107.21632 * 65.00049 * 10 9 7 14 14 C 1.38176 * 119.55082 * 269.72547 * 13 10 9 15 15 C 1.39841 * 118.99441 * 179.73758 * 14 13 10 16 16 C 1.48048 * 120.92545 * 180.26118 * 15 14 13 17 17 O 1.21427 * 120.00273 * 0.26774 * 16 15 14 18 18 O 1.34670 * 119.99955 * 180.27315 * 16 15 14 19 19 C 1.39883 * 118.14391 * 0.52802 * 15 14 13 20 20 C 1.38127 * 118.99758 * 359.73126 * 19 15 14 21 21 N 1.31794 * 119.55202 * 89.99915 * 13 10 9 22 22 H 0.97000 * 119.99399 * 359.97438 * 1 2 3 23 23 H 0.96997 * 119.99994 * 359.97438 * 9 7 2 24 24 H 1.07997 * 120.49698 * 359.97438 * 14 13 10 25 25 H 0.96694 * 117.00236 * 180.02562 * 18 16 15 26 26 H 1.07996 * 120.49762 * 179.75536 * 19 15 14 27 27 H 1.07995 * 119.54459 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 16 2.1534 -3.8223 -0.0005 11 8 1.1738 -4.8511 0.0342 12 8 3.1356 -3.7186 -1.0221 13 6 3.0301 -3.9183 1.5248 14 6 4.3148 -3.4159 1.6052 15 6 4.9979 -3.4932 2.8230 16 6 6.3736 -2.9633 2.9587 17 8 6.9226 -2.4483 2.0059 18 8 7.0161 -3.0525 4.1389 19 6 4.3471 -4.0904 3.9078 20 6 3.0637 -4.5713 3.7366 21 7 2.4537 -4.4733 2.5720 22 1 -0.4849 0.8401 0.0004 23 1 0.3554 -2.3880 0.0002 24 1 4.7828 -2.9669 0.7417 25 1 7.9125 -2.6922 4.1790 26 1 4.8407 -4.1737 4.8647 27 1 2.5529 -5.0336 4.5682 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309335550.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:24 Heat of formation + Delta-G solvation = -152.109981 kcal Electronic energy + Delta-G solvation = -18567.687267 eV Core-core repulsion = 15223.759229 eV Total energy + Delta-G solvation = -3343.928039 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87063 -40.56868 -38.09354 -37.27070 -36.74744 -36.56018 -34.06617 -32.94022 -32.67543 -26.84577 -26.48833 -25.15655 -23.08417 -20.61036 -20.10399 -19.60387 -19.02354 -18.35983 -17.68132 -17.17696 -16.90818 -16.89365 -16.45008 -16.09893 -15.52688 -15.33717 -15.13624 -14.53186 -13.87204 -13.54511 -13.14564 -13.04753 -13.02510 -12.91157 -12.76470 -12.44649 -12.32771 -12.12964 -11.99790 -11.89098 -11.33065 -10.80698 -10.67721 -10.23170 -8.40017 -5.94559 -0.79665 -0.49878 -0.32152 1.28728 1.45693 1.49752 1.56295 1.68525 2.16414 2.36780 2.57647 2.88739 3.10000 3.22715 3.53204 3.58330 3.74171 4.02442 4.11955 4.41367 4.54806 4.70264 5.01779 5.27561 5.38083 5.53966 6.48911 6.67724 6.78391 6.85506 7.24066 8.77388 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.015535 B = 0.008202 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.914472 B = 3413.027890 C = 4432.889448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.009 4.009 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.313 4.313 8 H 0.107 0.893 9 N -0.957 5.957 10 S 2.657 3.343 11 O -0.995 6.995 12 O -0.983 6.983 13 C -0.452 4.452 14 C -0.042 4.042 15 C -0.114 4.114 16 C 0.542 3.458 17 O -0.535 6.535 18 O -0.488 6.488 19 C -0.046 4.046 20 C 0.071 3.929 21 N -0.402 5.402 22 H 0.277 0.723 23 H 0.409 0.591 24 H 0.150 0.850 25 H 0.441 0.559 26 H 0.205 0.795 27 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.876 -4.418 12.586 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.213 4.213 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.449 4.449 8 H 0.125 0.875 9 N -0.711 5.711 10 S 2.745 3.255 11 O -0.984 6.984 12 O -0.973 6.973 13 C -0.668 4.668 14 C -0.064 4.064 15 C -0.124 4.124 16 C 0.386 3.614 17 O -0.425 6.425 18 O -0.302 6.302 19 C -0.065 4.065 20 C -0.091 4.091 21 N -0.113 5.113 22 H 0.086 0.914 23 H 0.245 0.755 24 H 0.168 0.832 25 H 0.304 0.696 26 H 0.222 0.778 27 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 9.919 -5.373 11.564 16.155 hybrid contribution 1.330 1.590 0.456 2.123 sum 11.249 -3.782 12.020 16.892 Atomic orbital electron populations 1.69780 1.07189 1.29218 1.49355 1.26019 0.96402 1.02289 0.96600 0.85184 0.78002 0.77036 0.79488 1.19074 1.20014 1.18986 1.19517 0.92489 0.83648 1.49290 0.87526 1.51478 1.16871 1.19155 1.83553 1.04313 0.72762 0.72893 0.75502 1.93425 1.59792 1.57412 1.87807 1.93498 1.62221 1.87225 1.54341 1.34170 1.04927 1.07189 1.20465 1.22115 0.93152 0.92192 0.98912 1.19655 0.93151 1.03970 0.95631 1.20390 0.85484 0.74865 0.80691 1.90934 1.67979 1.42413 1.41175 1.84438 1.36261 1.76420 1.33090 1.23218 0.94667 0.88997 0.99657 1.24029 0.92870 0.96866 0.95333 1.67629 1.36242 1.08021 0.99428 0.91352 0.75522 0.83208 0.69570 0.77812 0.76558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.39 13.06 21.65 0.28 -49.11 15 2 C -0.01 -0.48 5.50 84.86 0.47 -0.01 15 3 Si 0.98 40.58 29.55 68.60 2.03 42.60 15 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 5 H -0.28 -11.05 7.11 99.48 0.71 -10.34 15 6 H -0.27 -10.51 7.11 99.48 0.71 -9.81 15 7 C -0.31 -16.19 9.63 84.03 0.81 -15.38 15 8 H 0.11 5.25 7.82 -2.91 -0.02 5.23 15 9 N -0.96 -48.00 5.75 -54.26 -0.31 -48.31 15 10 S 2.66 122.82 5.76 -56.49 -0.33 122.50 15 11 O -1.00 -49.04 17.85 -128.00 -2.28 -51.32 15 12 O -0.98 -48.62 16.95 -128.00 -2.17 -50.79 15 13 C -0.45 -18.07 6.78 84.68 0.57 -17.50 15 14 C -0.04 -1.55 9.13 22.64 0.21 -1.34 15 15 C -0.11 -3.18 5.91 -19.89 -0.12 -3.30 15 16 C 0.54 13.36 8.30 70.43 0.58 13.94 15 17 O -0.53 -17.23 17.23 20.07 0.35 -16.89 15 18 O -0.49 -6.67 12.79 -55.79 -0.71 -7.38 15 19 C -0.05 -0.92 9.71 22.64 0.22 -0.70 15 20 C 0.07 1.69 11.17 84.67 0.95 2.63 15 21 N -0.40 -14.42 10.08 -193.48 -1.95 -16.37 15 22 H 0.28 14.06 8.31 -92.71 -0.77 13.29 15 23 H 0.41 21.05 8.02 -96.74 -0.78 20.27 15 24 H 0.15 5.78 7.29 -2.91 -0.02 5.75 15 25 H 0.44 1.89 9.11 -74.06 -0.67 1.21 15 26 H 0.20 2.00 7.71 -2.91 -0.02 1.98 15 27 H 0.22 2.98 8.06 -2.91 -0.02 2.96 15 Total: -1.00 -74.67 272.79 -1.60 -76.27 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -0.19 Total: 20.44 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 3.69 Total: -21.65 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -1.98 Total: -113.79 kcal Atomic # 8 Polarization: -121.56 SS G_CDS: -4.82 Total: -126.38 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.60 kcal Atomic # 16 Polarization: 122.82 SS G_CDS: -0.33 Total: 122.50 kcal Total: -74.67 -1.60 -76.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309335550.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.839 kcal (2) G-P(sol) polarization free energy of solvation -74.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds