Wall clock time and date at job start Mon Mar 30 2020 06:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00102 * 2 1 4 4 C 1.53002 * 109.47133 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47302 * 64.99764 * 4 3 2 6 6 C 1.46892 * 111.00098 * 66.04743 * 5 4 3 7 7 C 1.50699 * 109.47435 * 199.44954 * 6 5 4 8 8 H 1.07997 * 119.99746 * 355.12348 * 7 6 5 9 9 C 1.37876 * 120.00272 * 175.11850 * 7 6 5 10 10 N 1.31516 * 119.99653 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00113 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46977 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46733 * 120.00134 * 11 9 7 14 14 H 1.48499 * 109.47040 * 240.00129 * 11 9 7 15 15 C 1.46900 * 110.99790 * 190.00444 * 5 4 3 16 16 C 1.52994 * 109.47632 * 75.78563 * 15 5 4 17 17 C 1.52995 * 109.47291 * 184.82268 * 16 15 5 18 18 C 1.53004 * 109.46984 * 180.02562 * 17 16 15 19 19 C 1.52994 * 109.47365 * 60.00308 * 18 17 16 20 20 O 1.42905 * 109.47250 * 59.99828 * 19 18 17 21 21 C 1.53004 * 109.47001 * 300.00172 * 19 18 17 22 22 C 1.52995 * 109.47228 * 59.99630 * 21 19 18 23 23 H 1.09000 * 109.47311 * 60.00471 * 1 2 3 24 24 H 1.09008 * 109.47049 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47168 * 299.99754 * 1 2 3 26 26 H 1.08997 * 109.47462 * 59.99985 * 3 2 1 27 27 H 1.08997 * 109.46876 * 299.99740 * 3 2 1 28 28 H 1.09009 * 109.46784 * 304.99911 * 4 3 2 29 29 H 1.09001 * 109.46897 * 185.00409 * 4 3 2 30 30 H 1.08998 * 109.47132 * 319.45460 * 6 5 4 31 31 H 1.09002 * 109.47241 * 79.44521 * 6 5 4 32 32 H 0.97006 * 119.99623 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.46957 * 315.78681 * 15 5 4 34 34 H 1.08998 * 109.46779 * 195.79306 * 15 5 4 35 35 H 1.09004 * 109.47439 * 304.82674 * 16 15 5 36 36 H 1.09000 * 109.46979 * 60.00632 * 17 16 15 37 37 H 1.08998 * 109.47456 * 300.00163 * 17 16 15 38 38 H 1.08999 * 109.46937 * 299.99722 * 18 17 16 39 39 H 1.09008 * 109.46963 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.47197 * 179.97438 * 19 18 17 41 41 H 0.96700 * 113.99840 * 180.02562 * 20 19 18 42 42 H 1.09001 * 109.46991 * 180.02562 * 21 19 18 43 43 H 1.09004 * 109.46810 * 299.99455 * 21 19 18 44 44 H 1.09001 * 109.46990 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.47368 * 60.00167 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9769 0.5626 -1.2561 6 6 3.6951 1.4353 -2.4036 7 6 3.7037 0.6186 -3.6700 8 1 3.9761 -0.4259 -3.6371 9 6 3.3636 1.2049 -4.8707 10 7 3.0323 2.4770 -4.9108 11 14 3.3736 0.1923 -6.4405 12 1 3.7786 -1.2017 -6.1277 13 1 2.0135 0.1902 -7.0367 14 1 4.3359 0.7834 -7.4047 15 6 5.4026 0.2135 -1.1978 16 6 5.5863 -1.0395 -0.3394 17 6 7.0791 -1.3338 -0.1794 18 6 7.2627 -2.5873 0.6786 19 6 6.5788 -3.7752 -0.0011 20 8 7.1629 -3.9888 -1.2877 21 6 5.0859 -3.4809 -0.1613 22 6 4.9024 -2.2275 -1.0191 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8514 0.5681 0.8410 29 1 3.9785 2.1765 0.0890 30 1 2.7165 1.8982 -2.2763 31 1 4.4583 2.2110 -2.4662 32 1 2.7934 2.8895 -5.7557 33 1 5.9613 1.0399 -0.7585 34 1 5.7710 0.0210 -2.2054 35 1 5.1409 -0.8763 0.6420 36 1 7.5664 -0.4874 0.3046 37 1 7.5246 -1.4971 -1.1607 38 1 6.8172 -2.4243 1.6599 39 1 8.3263 -2.7967 0.7930 40 1 6.7100 -4.6683 0.6099 41 1 6.7769 -4.7282 -1.7770 42 1 4.5986 -4.3274 -0.6451 43 1 4.6404 -3.3181 0.8201 44 1 3.8388 -2.0181 -1.1336 45 1 5.3479 -2.3903 -2.0006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310526461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:49 Heat of formation + Delta-G solvation = -111.769206 kcal Electronic energy + Delta-G solvation = -22551.844738 eV Core-core repulsion = 19375.671425 eV Total energy + Delta-G solvation = -3176.173313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.11159 -37.69093 -36.31012 -34.57086 -32.47989 -30.57725 -30.43550 -29.00235 -26.73344 -25.73915 -23.98935 -22.53954 -22.31002 -21.01113 -19.63352 -19.14459 -16.64405 -16.47067 -15.88762 -15.54962 -15.42643 -14.85225 -14.48666 -14.38505 -14.03217 -13.80015 -13.37207 -13.05050 -12.61534 -12.40167 -12.27043 -11.96987 -11.88200 -11.51638 -11.32898 -11.22921 -11.18606 -10.81151 -10.78562 -10.67084 -10.56601 -10.36075 -10.16337 -9.82693 -9.69321 -9.60857 -9.28864 -9.11425 -9.00009 -8.33937 -7.07265 -5.95423 -3.94446 3.35388 3.42703 3.48767 4.33596 4.39319 4.49616 4.89577 4.98864 4.98995 5.17943 5.40372 5.47108 5.54526 5.55212 5.66761 5.72058 5.77546 5.81330 5.81955 5.86952 5.91317 5.99595 6.00121 6.08174 6.17379 6.19214 6.27837 6.33480 6.49128 6.51935 6.59839 6.72417 6.74003 7.07083 7.13381 7.32740 7.39809 7.71973 7.79532 7.93442 8.21595 8.33914 8.65812 9.14088 9.68915 11.15501 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.006816 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.628785 B = 4106.849826 C = 5355.293706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.067 3.933 4 C 0.057 3.943 5 N -0.522 5.522 6 C 0.189 3.811 7 C -0.492 4.492 8 H 0.064 0.936 9 C 0.052 3.948 10 N -0.903 5.903 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.286 1.286 15 C 0.068 3.932 16 C -0.075 4.075 17 C -0.112 4.112 18 C -0.108 4.108 19 C 0.105 3.895 20 O -0.562 6.562 21 C -0.151 4.151 22 C -0.097 4.097 23 H 0.039 0.961 24 H 0.078 0.922 25 H 0.029 0.971 26 H 0.036 0.964 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.034 0.966 31 H -0.015 1.015 32 H 0.258 0.742 33 H 0.015 0.985 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.373 0.627 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.441 -8.463 12.294 15.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C -0.010 4.010 4 C -0.072 4.072 5 N -0.246 5.246 6 C 0.064 3.936 7 C -0.531 4.531 8 H 0.082 0.918 9 C -0.148 4.148 10 N -0.544 5.544 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.213 1.213 15 C -0.060 4.060 16 C -0.094 4.094 17 C -0.150 4.150 18 C -0.145 4.145 19 C 0.047 3.953 20 O -0.367 6.367 21 C -0.189 4.189 22 C -0.134 4.134 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.003 0.997 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.219 0.781 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.590 -8.403 12.288 15.110 hybrid contribution -0.256 0.157 -0.928 0.975 sum 2.335 -8.246 11.360 14.230 Atomic orbital electron populations 1.22640 0.82651 1.01897 0.99212 1.87976 1.18057 1.27596 1.95143 1.22631 0.94136 0.84858 0.99378 1.22042 0.93186 0.97098 0.94884 1.62037 1.15790 1.44878 1.01885 1.19812 0.95885 0.90709 0.87230 1.21207 1.44047 0.96896 0.90931 0.91750 1.24973 0.95785 0.94949 0.99101 1.69970 1.47475 1.10962 1.26008 0.86495 0.77422 0.80543 0.83313 1.19607 1.21211 1.21270 1.22016 0.89176 0.94440 1.00374 1.21092 0.93831 0.95716 0.98765 1.21493 0.97010 0.95925 1.00530 1.21495 1.00093 0.94679 0.98279 1.21778 0.92580 0.96646 0.84338 1.86527 1.63666 1.55817 1.30729 1.22276 0.95676 0.99678 1.01278 1.21321 1.02448 0.91700 0.97961 0.94217 0.90362 0.95285 0.94631 0.92271 0.91430 0.94904 0.94835 0.99707 0.93195 0.96684 0.90102 0.92307 0.92843 0.91113 0.91214 0.92061 0.93870 0.78068 0.92447 0.91666 0.89940 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -6.87 10.65 -35.23 -0.38 -7.25 16 3 C 0.07 1.20 6.02 37.16 0.22 1.42 16 4 C 0.06 1.04 5.17 -3.82 -0.02 1.02 16 5 N -0.52 -11.20 3.75 -236.08 -0.89 -12.09 16 6 C 0.19 4.90 4.59 -4.98 -0.02 4.87 16 7 C -0.49 -13.90 8.52 -34.44 -0.29 -14.19 16 8 H 0.06 1.83 7.75 -52.49 -0.41 1.42 16 9 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 11 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 C 0.07 1.33 4.20 -3.83 -0.02 1.32 16 16 C -0.08 -1.22 2.24 -90.62 -0.20 -1.42 16 17 C -0.11 -1.61 5.06 -26.73 -0.14 -1.74 16 18 C -0.11 -1.33 5.66 -26.73 -0.15 -1.48 16 19 C 0.11 1.28 3.77 -26.73 -0.10 1.18 16 20 O -0.56 -7.39 11.97 -35.23 -0.42 -7.81 16 21 C -0.15 -1.98 5.64 -26.73 -0.15 -2.13 16 22 C -0.10 -1.61 4.94 -26.73 -0.13 -1.74 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.19 6.08 -51.93 -0.32 0.88 16 28 H 0.07 1.14 6.57 -51.92 -0.34 0.80 16 29 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.03 0.93 5.82 -51.93 -0.30 0.62 16 31 H -0.01 -0.41 8.00 -51.93 -0.42 -0.83 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.01 0.28 8.00 -51.93 -0.42 -0.13 16 34 H 0.08 1.78 7.24 -51.93 -0.38 1.40 16 35 H 0.06 0.94 6.67 -51.93 -0.35 0.60 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.14 7.68 -51.93 -0.40 0.74 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.37 3.54 9.08 45.56 0.41 3.96 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.60 7.75 -51.93 -0.40 1.20 16 45 H 0.06 1.13 7.68 -51.93 -0.40 0.73 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -31.27 348.97 -8.18 -39.46 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.49 Total: 1.60 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 0.01 Total: -9.91 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.15 Total: -38.39 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.80 Total: -15.06 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.27 -8.18 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310526461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.312 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds