Wall clock time and date at job start Mon Mar 30 2020 06:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00102 * 2 1 4 4 C 1.53002 * 109.47133 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47302 * 64.99764 * 4 3 2 6 6 C 1.46892 * 111.00098 * 66.04743 * 5 4 3 7 7 C 1.50699 * 109.47435 * 199.44954 * 6 5 4 8 8 H 1.07997 * 119.99746 * 355.12348 * 7 6 5 9 9 C 1.37876 * 120.00272 * 175.11850 * 7 6 5 10 10 N 1.31516 * 119.99653 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00113 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46977 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46733 * 120.00134 * 11 9 7 14 14 H 1.48499 * 109.47040 * 240.00129 * 11 9 7 15 15 C 1.46900 * 110.99790 * 190.00444 * 5 4 3 16 16 C 1.52994 * 109.47632 * 75.78563 * 15 5 4 17 17 C 1.52995 * 109.47291 * 184.82268 * 16 15 5 18 18 C 1.53004 * 109.46984 * 180.02562 * 17 16 15 19 19 C 1.52994 * 109.47365 * 60.00308 * 18 17 16 20 20 O 1.42905 * 109.47250 * 59.99828 * 19 18 17 21 21 C 1.53004 * 109.47001 * 300.00172 * 19 18 17 22 22 C 1.52995 * 109.47228 * 59.99630 * 21 19 18 23 23 H 1.09000 * 109.47311 * 60.00471 * 1 2 3 24 24 H 1.09008 * 109.47049 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47168 * 299.99754 * 1 2 3 26 26 H 1.08997 * 109.47462 * 59.99985 * 3 2 1 27 27 H 1.08997 * 109.46876 * 299.99740 * 3 2 1 28 28 H 1.09009 * 109.46784 * 304.99911 * 4 3 2 29 29 H 1.09001 * 109.46897 * 185.00409 * 4 3 2 30 30 H 1.08998 * 109.47132 * 319.45460 * 6 5 4 31 31 H 1.09002 * 109.47241 * 79.44521 * 6 5 4 32 32 H 0.97006 * 119.99623 * 179.97438 * 10 9 7 33 33 H 1.09000 * 109.46957 * 315.78681 * 15 5 4 34 34 H 1.08998 * 109.46779 * 195.79306 * 15 5 4 35 35 H 1.09004 * 109.47439 * 304.82674 * 16 15 5 36 36 H 1.09000 * 109.46979 * 60.00632 * 17 16 15 37 37 H 1.08998 * 109.47456 * 300.00163 * 17 16 15 38 38 H 1.08999 * 109.46937 * 299.99722 * 18 17 16 39 39 H 1.09008 * 109.46963 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.47197 * 179.97438 * 19 18 17 41 41 H 0.96700 * 113.99840 * 180.02562 * 20 19 18 42 42 H 1.09001 * 109.46991 * 180.02562 * 21 19 18 43 43 H 1.09004 * 109.46810 * 299.99455 * 21 19 18 44 44 H 1.09001 * 109.46990 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.47368 * 60.00167 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9769 0.5626 -1.2561 6 6 3.6951 1.4353 -2.4036 7 6 3.7037 0.6186 -3.6700 8 1 3.9761 -0.4259 -3.6371 9 6 3.3636 1.2049 -4.8707 10 7 3.0323 2.4770 -4.9108 11 14 3.3736 0.1923 -6.4405 12 1 3.7786 -1.2017 -6.1277 13 1 2.0135 0.1902 -7.0367 14 1 4.3359 0.7834 -7.4047 15 6 5.4026 0.2135 -1.1978 16 6 5.5863 -1.0395 -0.3394 17 6 7.0791 -1.3338 -0.1794 18 6 7.2627 -2.5873 0.6786 19 6 6.5788 -3.7752 -0.0011 20 8 7.1629 -3.9888 -1.2877 21 6 5.0859 -3.4809 -0.1613 22 6 4.9024 -2.2275 -1.0191 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8514 0.5681 0.8410 29 1 3.9785 2.1765 0.0890 30 1 2.7165 1.8982 -2.2763 31 1 4.4583 2.2110 -2.4662 32 1 2.7934 2.8895 -5.7557 33 1 5.9613 1.0399 -0.7585 34 1 5.7710 0.0210 -2.2054 35 1 5.1409 -0.8763 0.6420 36 1 7.5664 -0.4874 0.3046 37 1 7.5246 -1.4971 -1.1607 38 1 6.8172 -2.4243 1.6599 39 1 8.3263 -2.7967 0.7930 40 1 6.7100 -4.6683 0.6099 41 1 6.7769 -4.7282 -1.7770 42 1 4.5986 -4.3274 -0.6451 43 1 4.6404 -3.3181 0.8201 44 1 3.8388 -2.0181 -1.1336 45 1 5.3479 -2.3903 -2.0006 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310526461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:48 Heat of formation + Delta-G solvation = -134.195714 kcal Electronic energy + Delta-G solvation = -22552.817224 eV Core-core repulsion = 19375.671425 eV Total energy + Delta-G solvation = -3177.145800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.32981 -39.09548 -37.75069 -35.86347 -34.60036 -31.83813 -31.57001 -30.65957 -28.53395 -27.01265 -25.64478 -24.28872 -23.48199 -22.36050 -21.09169 -20.45640 -18.57258 -17.67293 -17.32854 -16.98426 -16.77262 -16.49006 -16.12265 -15.51733 -15.47816 -15.28120 -14.87788 -14.43940 -13.97583 -13.91264 -13.69920 -13.53993 -13.21021 -13.03984 -12.85394 -12.67127 -12.63740 -12.50451 -12.34214 -12.11945 -11.99283 -11.88044 -11.74382 -11.32060 -11.26105 -11.06605 -10.78456 -10.60570 -10.43613 -10.36277 -8.85259 -8.17424 -6.24958 1.38013 1.38460 1.52483 2.40781 3.00973 3.13148 3.30815 3.53226 3.85789 3.94533 4.07045 4.19757 4.28672 4.35726 4.39672 4.47856 4.55462 4.57380 4.61259 4.63120 4.70103 4.72389 4.74443 4.85682 4.88605 4.94388 5.00236 5.04263 5.14850 5.21422 5.26058 5.29580 5.33103 5.40475 5.51690 5.69236 5.71295 5.77088 6.13223 6.39001 6.48597 6.74207 6.90862 7.00476 7.43346 8.93081 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.006816 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.628785 B = 4106.849826 C = 5355.293706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.394 6.394 3 C 0.071 3.929 4 C 0.054 3.946 5 N -0.527 5.527 6 C 0.205 3.795 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.001 3.999 10 N -0.936 5.936 11 Si 0.961 3.039 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.279 1.279 15 C 0.071 3.929 16 C -0.064 4.064 17 C -0.107 4.107 18 C -0.107 4.107 19 C 0.105 3.895 20 O -0.584 6.584 21 C -0.144 4.144 22 C -0.091 4.091 23 H 0.026 0.974 24 H 0.095 0.905 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.027 0.973 28 H 0.091 0.909 29 H 0.038 0.962 30 H 0.014 0.986 31 H -0.045 1.045 32 H 0.262 0.738 33 H 0.020 0.980 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.387 0.613 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 -10.236 13.999 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.313 6.313 3 C -0.006 4.006 4 C -0.074 4.074 5 N -0.251 5.251 6 C 0.079 3.921 7 C -0.545 4.545 8 H 0.074 0.926 9 C -0.196 4.196 10 N -0.578 5.578 11 Si 0.786 3.214 12 H -0.191 1.191 13 H -0.203 1.203 14 H -0.205 1.205 15 C -0.058 4.058 16 C -0.083 4.083 17 C -0.145 4.145 18 C -0.145 4.145 19 C 0.047 3.953 20 O -0.391 6.391 21 C -0.181 4.181 22 C -0.129 4.129 23 H 0.044 0.956 24 H 0.114 0.886 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.045 0.955 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.032 0.968 31 H -0.028 1.028 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.235 0.765 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.796 -10.193 14.005 17.546 hybrid contribution -0.350 0.737 -1.434 1.650 sum 2.446 -9.455 12.571 15.919 Atomic orbital electron populations 1.22830 0.80733 1.03334 0.99899 1.87925 1.20257 1.27843 1.95299 1.22571 0.93659 0.84874 0.99503 1.22174 0.93871 0.97606 0.93751 1.61983 1.17123 1.43945 1.02018 1.19450 0.93759 0.90192 0.88690 1.21445 1.44043 0.96659 0.92335 0.92645 1.25818 0.95271 0.96057 1.02473 1.70082 1.48156 1.12494 1.27048 0.85454 0.77792 0.79043 0.79100 1.19105 1.20329 1.20458 1.22023 0.87975 0.96421 0.99345 1.21001 0.95508 0.93610 0.98144 1.21425 0.95070 0.97882 1.00129 1.21547 1.01097 0.93238 0.98584 1.21868 0.91321 0.97748 0.84377 1.86500 1.64189 1.56870 1.31549 1.22219 0.97086 0.97827 1.00988 1.21175 0.99934 0.93989 0.97775 0.95554 0.88638 0.92492 0.90984 0.95518 0.89090 0.94400 0.96816 1.02760 0.92882 0.96190 0.93546 0.91095 0.91819 0.93394 0.89174 0.91042 0.90985 0.76466 0.91427 0.90455 0.93233 0.94526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.39 -14.41 10.65 -148.98 -1.59 -15.99 16 3 C 0.07 2.51 6.02 71.98 0.43 2.94 16 4 C 0.05 1.97 5.17 86.30 0.45 2.42 16 5 N -0.53 -23.35 3.75 -900.81 -3.38 -26.72 16 6 C 0.21 11.22 4.59 85.56 0.39 11.61 16 7 C -0.51 -29.80 8.52 25.60 0.22 -29.58 16 8 H 0.06 3.29 7.75 -2.91 -0.02 3.27 16 9 C 0.00 0.06 5.46 84.65 0.46 0.52 16 10 N -0.94 -57.59 13.29 21.45 0.28 -57.31 16 11 Si 0.96 46.11 29.54 68.60 2.03 48.14 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 15 C 0.07 2.84 4.20 86.30 0.36 3.20 16 16 C -0.06 -2.04 2.24 -10.80 -0.02 -2.06 16 17 C -0.11 -2.95 5.06 30.59 0.15 -2.80 16 18 C -0.11 -2.31 5.66 30.59 0.17 -2.14 16 19 C 0.11 2.25 3.77 30.59 0.12 2.37 16 20 O -0.58 -14.37 11.97 -148.98 -1.78 -16.15 16 21 C -0.14 -3.45 5.64 30.59 0.17 -3.27 16 22 C -0.09 -3.03 4.94 30.59 0.15 -2.88 16 23 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.03 1.11 6.08 -2.39 -0.01 1.10 16 28 H 0.09 2.90 6.57 -2.38 -0.02 2.88 16 29 H 0.04 1.35 8.12 -2.39 -0.02 1.33 16 30 H 0.01 0.81 5.82 -2.39 -0.01 0.79 16 31 H -0.05 -2.68 8.00 -2.39 -0.02 -2.70 16 32 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 33 H 0.02 0.77 8.00 -2.39 -0.02 0.75 16 34 H 0.05 2.16 7.24 -2.39 -0.02 2.14 16 35 H 0.07 2.12 6.67 -2.39 -0.02 2.10 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.54 7.68 -2.39 -0.02 1.52 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.39 6.74 9.08 -74.06 -0.67 6.06 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 1.96 7.75 -2.39 -0.02 1.94 16 45 H 0.04 1.37 7.68 -2.39 -0.02 1.36 16 Total: -1.00 -69.89 348.97 0.14 -69.75 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.27 Total: 15.92 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 4.31 Total: -17.63 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -3.09 Total: -84.03 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -3.37 Total: -32.15 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -69.89 0.14 -69.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310526461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.447 kcal (2) G-P(sol) polarization free energy of solvation -69.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds