Wall clock time and date at job start Mon Mar 30 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47151 * 2 1 4 4 C 1.42896 * 113.99954 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47058 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.45672 * 183.44382 * 5 4 3 7 7 C 1.53036 * 109.46247 * 303.42399 * 5 4 3 8 8 C 1.53119 * 109.27689 * 179.19392 * 7 5 4 9 9 C 1.53114 * 109.16320 * 302.34364 * 8 7 5 10 10 C 1.53039 * 109.27846 * 57.65259 * 9 8 7 11 11 N 1.46847 * 109.52328 * 300.82408 * 10 9 8 12 12 C 1.46904 * 110.99726 * 185.83684 * 11 10 9 13 13 C 1.52996 * 109.46896 * 65.23163 * 12 11 10 14 14 O 1.42903 * 109.47313 * 64.99944 * 13 12 11 15 15 C 1.42901 * 114.00127 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47260 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99584 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99803 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00473 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99856 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46761 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47186 * 119.99524 * 20 18 16 23 23 H 1.48502 * 109.46813 * 240.00077 * 20 18 16 24 24 H 1.08999 * 109.47200 * 60.00395 * 1 2 3 25 25 H 1.08999 * 109.46742 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47012 * 300.00303 * 1 2 3 27 27 H 1.08994 * 109.47689 * 239.99749 * 2 1 3 28 28 H 1.08999 * 109.47200 * 119.99605 * 2 1 3 29 29 H 1.09000 * 109.47372 * 59.99902 * 4 3 2 30 30 H 1.08999 * 109.47207 * 299.99473 * 4 3 2 31 31 H 1.08996 * 109.50725 * 59.25525 * 7 5 4 32 32 H 1.08999 * 109.53760 * 299.15040 * 7 5 4 33 33 H 1.08997 * 109.52552 * 182.43632 * 8 7 5 34 34 H 1.09005 * 109.57708 * 62.27818 * 8 7 5 35 35 H 1.09008 * 109.50605 * 297.71798 * 9 8 7 36 36 H 1.09002 * 109.50902 * 177.59729 * 9 8 7 37 37 H 1.09001 * 109.46223 * 180.80907 * 10 9 8 38 38 H 1.08996 * 109.46168 * 60.83999 * 10 9 8 39 39 H 1.09000 * 109.47214 * 305.22845 * 12 11 10 40 40 H 1.08999 * 109.46733 * 185.22767 * 12 11 10 41 41 H 1.08999 * 109.47523 * 304.99817 * 13 12 11 42 42 H 1.09005 * 109.46992 * 184.99710 * 13 12 11 43 43 H 1.09010 * 109.46883 * 299.99868 * 15 14 13 44 44 H 1.08999 * 109.47059 * 59.99174 * 15 14 13 45 45 H 0.97004 * 120.00516 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 1 4.9102 3.0246 -0.0614 7 6 3.1895 3.6353 -1.2051 8 6 3.5705 5.1183 -1.1905 9 6 3.1107 5.7423 0.1299 10 6 3.7488 4.9844 1.2963 11 7 3.3535 3.5713 1.2381 12 6 3.8342 2.8412 2.4188 13 6 3.1385 3.3808 3.6701 14 8 1.7393 3.1000 3.5958 15 6 0.9927 3.5643 4.7223 16 6 -0.4620 3.2160 4.5390 17 1 -0.7841 2.6927 3.6509 18 6 -1.3816 3.5662 5.5047 19 7 -0.9894 4.2038 6.5860 20 14 -3.1850 3.1349 5.2772 21 1 -3.3647 2.4240 3.9859 22 1 -3.6288 2.2589 6.3910 23 1 -3.9948 4.3797 5.2734 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9764 -0.8891 30 1 3.8332 0.9768 0.8908 31 1 2.1052 3.5377 -1.1516 32 1 3.5513 3.1757 -2.1248 33 1 3.0845 5.6274 -2.0227 34 1 4.6519 5.2185 -1.2836 35 1 2.0251 5.6778 0.2045 36 1 3.4168 6.7879 0.1644 37 1 3.4121 5.4172 2.2383 38 1 4.8340 5.0610 1.2289 39 1 4.9115 2.9757 2.5154 40 1 3.6089 1.7806 2.3067 41 1 3.2900 4.4583 3.7340 42 1 3.5587 2.9017 4.5545 43 1 1.3685 3.0887 5.6283 44 1 1.0998 4.6456 4.8085 45 1 -1.6364 4.4498 7.2655 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313462735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:22 Heat of formation + Delta-G solvation = -98.721371 kcal Electronic energy + Delta-G solvation = -22387.527994 eV Core-core repulsion = 19211.920478 eV Total energy + Delta-G solvation = -3175.607517 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.48117 -37.29997 -36.40375 -33.62469 -32.53731 -32.15276 -30.25618 -28.76607 -26.70665 -25.99176 -24.00947 -22.52753 -22.19898 -21.48188 -20.74221 -19.43751 -16.60801 -16.33050 -16.10704 -15.84809 -15.41273 -14.84719 -14.47759 -14.25963 -14.17703 -13.92551 -13.69940 -13.25702 -12.87762 -12.78423 -12.51842 -12.20856 -11.97129 -11.70332 -11.62684 -11.25220 -11.10357 -11.04397 -10.85992 -10.72248 -10.69096 -10.58528 -10.53081 -10.09572 -9.96546 -9.79079 -9.26056 -8.95338 -8.68129 -8.01742 -7.86808 -6.01349 -4.01188 3.35156 3.41316 3.48868 3.86946 4.08933 4.44092 4.83698 4.84606 4.95705 5.07999 5.24015 5.24937 5.32918 5.35299 5.38204 5.41304 5.53709 5.55114 5.57457 5.65449 5.69218 5.80847 5.86196 5.89646 5.95744 6.01054 6.07446 6.13442 6.16642 6.17443 6.37260 6.39751 6.42874 6.47531 6.61363 7.22222 7.37580 7.43784 7.55194 7.56770 7.92091 8.28928 8.75608 9.15298 9.63359 11.10599 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.005516 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.398423 B = 5074.466462 C = 5924.192289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.067 3.933 5 C 0.090 3.910 6 H 0.044 0.956 7 C -0.107 4.107 8 C -0.119 4.119 9 C -0.117 4.117 10 C 0.055 3.945 11 N -0.507 5.507 12 C 0.057 3.943 13 C 0.068 3.932 14 O -0.373 6.373 15 C 0.194 3.806 16 C -0.504 4.504 17 H 0.067 0.933 18 C 0.054 3.946 19 N -0.902 5.902 20 Si 0.904 3.096 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.283 1.283 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.023 0.977 39 H 0.033 0.967 40 H 0.083 0.917 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.000 1.000 44 H 0.001 0.999 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.674 -3.397 -14.906 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.275 6.275 4 C -0.010 4.010 5 C -0.018 4.018 6 H 0.061 0.939 7 C -0.145 4.145 8 C -0.157 4.157 9 C -0.154 4.154 10 C -0.073 4.073 11 N -0.232 5.232 12 C -0.071 4.071 13 C -0.010 4.010 14 O -0.292 6.292 15 C 0.119 3.881 16 C -0.542 4.542 17 H 0.086 0.914 18 C -0.146 4.146 19 N -0.542 5.542 20 Si 0.732 3.268 21 H -0.194 1.194 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.873 -3.283 -14.898 18.734 hybrid contribution 0.337 -0.214 0.408 0.571 sum 11.210 -3.497 -14.490 18.651 Atomic orbital electron populations 1.21709 0.93704 1.01665 1.03741 1.22386 0.95915 0.84432 0.98980 1.88102 1.19361 1.25040 1.95036 1.22571 0.83217 0.95932 0.99318 1.21645 0.95879 0.92646 0.91640 0.93875 1.21516 1.02998 0.94414 0.95543 1.21575 1.00090 0.96175 0.97817 1.21569 1.02250 0.97911 0.93706 1.22131 0.96305 0.88948 0.99870 1.61718 1.59917 1.01223 1.00317 1.22225 0.94968 0.99646 0.90242 1.22233 0.86085 0.97916 0.94789 1.88001 1.15173 1.80558 1.45469 1.20159 0.91034 0.93457 0.83440 1.21107 0.91073 1.36649 1.05382 0.91436 1.24940 0.99430 0.95310 0.94968 1.69978 1.34587 1.40486 1.09155 0.86328 0.84150 0.78102 0.78217 1.19429 1.20992 1.20944 0.92281 0.91753 0.90778 0.94555 0.93764 0.93812 0.93215 0.89697 0.92340 0.92066 0.92913 0.90480 0.92035 0.90121 0.95935 0.94940 0.89840 0.94706 0.94679 0.98247 0.98096 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 37.16 0.38 -1.66 16 2 C 0.06 0.81 6.66 37.16 0.25 1.05 16 3 O -0.36 -5.73 9.44 -35.23 -0.33 -6.06 16 4 C 0.07 0.88 5.16 37.16 0.19 1.07 16 5 C 0.09 1.20 2.23 -67.72 -0.15 1.05 16 6 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 7 C -0.11 -1.33 5.20 -26.65 -0.14 -1.47 16 8 C -0.12 -1.35 6.00 -26.61 -0.16 -1.51 16 9 C -0.12 -1.53 6.09 -26.65 -0.16 -1.69 16 10 C 0.06 0.80 5.29 -3.83 -0.02 0.78 16 11 N -0.51 -8.13 4.37 -226.69 -0.99 -9.12 16 12 C 0.06 0.91 5.06 -3.82 -0.02 0.89 16 13 C 0.07 1.33 5.99 37.16 0.22 1.55 16 14 O -0.37 -9.45 10.27 -35.23 -0.36 -9.81 16 15 C 0.19 5.52 5.69 36.00 0.20 5.72 16 16 C -0.50 -15.32 9.43 -34.44 -0.32 -15.64 16 17 H 0.07 2.07 7.81 -52.49 -0.41 1.66 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.69 13.29 55.43 0.74 -26.96 16 20 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.65 5.93 -51.93 -0.31 0.34 16 31 H 0.08 1.27 7.57 -51.93 -0.39 0.88 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.29 6.10 -51.93 -0.32 0.98 16 38 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.03 0.44 8.13 -51.93 -0.42 0.02 16 40 H 0.08 1.37 5.61 -51.93 -0.29 1.08 16 41 H 0.03 0.67 6.20 -51.93 -0.32 0.35 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.00 -0.01 8.14 -51.92 -0.42 -0.43 16 44 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 352.71 15.07 5.32 5.32 Total: -1.00 -32.87 352.71 -8.84 -41.71 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -8.36 Total: -4.16 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 0.17 Total: -8.36 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.25 Total: -36.08 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.69 Total: -15.87 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.87 -8.84 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313462735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.007 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds