Wall clock time and date at job start Mon Mar 30 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.47151 * 2 1 4 4 C 1.42896 * 113.99954 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47058 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.45672 * 183.44382 * 5 4 3 7 7 C 1.53036 * 109.46247 * 303.42399 * 5 4 3 8 8 C 1.53119 * 109.27689 * 179.19392 * 7 5 4 9 9 C 1.53114 * 109.16320 * 302.34364 * 8 7 5 10 10 C 1.53039 * 109.27846 * 57.65259 * 9 8 7 11 11 N 1.46847 * 109.52328 * 300.82408 * 10 9 8 12 12 C 1.46904 * 110.99726 * 185.83684 * 11 10 9 13 13 C 1.52996 * 109.46896 * 65.23163 * 12 11 10 14 14 O 1.42903 * 109.47313 * 64.99944 * 13 12 11 15 15 C 1.42901 * 114.00127 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47260 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99584 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99803 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00473 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99856 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46761 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47186 * 119.99524 * 20 18 16 23 23 H 1.48502 * 109.46813 * 240.00077 * 20 18 16 24 24 H 1.08999 * 109.47200 * 60.00395 * 1 2 3 25 25 H 1.08999 * 109.46742 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47012 * 300.00303 * 1 2 3 27 27 H 1.08994 * 109.47689 * 239.99749 * 2 1 3 28 28 H 1.08999 * 109.47200 * 119.99605 * 2 1 3 29 29 H 1.09000 * 109.47372 * 59.99902 * 4 3 2 30 30 H 1.08999 * 109.47207 * 299.99473 * 4 3 2 31 31 H 1.08996 * 109.50725 * 59.25525 * 7 5 4 32 32 H 1.08999 * 109.53760 * 299.15040 * 7 5 4 33 33 H 1.08997 * 109.52552 * 182.43632 * 8 7 5 34 34 H 1.09005 * 109.57708 * 62.27818 * 8 7 5 35 35 H 1.09008 * 109.50605 * 297.71798 * 9 8 7 36 36 H 1.09002 * 109.50902 * 177.59729 * 9 8 7 37 37 H 1.09001 * 109.46223 * 180.80907 * 10 9 8 38 38 H 1.08996 * 109.46168 * 60.83999 * 10 9 8 39 39 H 1.09000 * 109.47214 * 305.22845 * 12 11 10 40 40 H 1.08999 * 109.46733 * 185.22767 * 12 11 10 41 41 H 1.08999 * 109.47523 * 304.99817 * 13 12 11 42 42 H 1.09005 * 109.46992 * 184.99710 * 13 12 11 43 43 H 1.09010 * 109.46883 * 299.99868 * 15 14 13 44 44 H 1.08999 * 109.47059 * 59.99174 * 15 14 13 45 45 H 0.97004 * 120.00516 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 1 4.9102 3.0246 -0.0614 7 6 3.1895 3.6353 -1.2051 8 6 3.5705 5.1183 -1.1905 9 6 3.1107 5.7423 0.1299 10 6 3.7488 4.9844 1.2963 11 7 3.3535 3.5713 1.2381 12 6 3.8342 2.8412 2.4188 13 6 3.1385 3.3808 3.6701 14 8 1.7393 3.1000 3.5958 15 6 0.9927 3.5643 4.7223 16 6 -0.4620 3.2160 4.5390 17 1 -0.7841 2.6927 3.6509 18 6 -1.3816 3.5662 5.5047 19 7 -0.9894 4.2038 6.5860 20 14 -3.1850 3.1349 5.2772 21 1 -3.3647 2.4240 3.9859 22 1 -3.6288 2.2589 6.3910 23 1 -3.9948 4.3797 5.2734 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8340 0.9764 -0.8891 30 1 3.8332 0.9768 0.8908 31 1 2.1052 3.5377 -1.1516 32 1 3.5513 3.1757 -2.1248 33 1 3.0845 5.6274 -2.0227 34 1 4.6519 5.2185 -1.2836 35 1 2.0251 5.6778 0.2045 36 1 3.4168 6.7879 0.1644 37 1 3.4121 5.4172 2.2383 38 1 4.8340 5.0610 1.2289 39 1 4.9115 2.9757 2.5154 40 1 3.6089 1.7806 2.3067 41 1 3.2900 4.4583 3.7340 42 1 3.5587 2.9017 4.5545 43 1 1.3685 3.0887 5.6283 44 1 1.0998 4.6456 4.8085 45 1 -1.6364 4.4498 7.2655 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313462735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:21 Heat of formation + Delta-G solvation = -121.050894 kcal Electronic energy + Delta-G solvation = -22388.496275 eV Core-core repulsion = 19211.920478 eV Total energy + Delta-G solvation = -3176.575797 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59710 -38.59532 -38.09375 -35.15640 -34.46338 -33.25918 -31.34042 -30.38665 -28.70289 -27.09145 -25.23719 -24.44774 -23.59708 -22.63608 -21.96822 -20.49214 -18.60892 -17.75103 -17.44490 -17.20951 -16.95302 -16.38801 -16.02502 -15.75666 -15.53962 -15.16881 -14.80342 -14.74465 -14.26003 -14.07582 -13.75698 -13.57838 -13.38470 -13.14291 -12.96103 -12.76758 -12.69334 -12.53241 -12.35267 -12.20227 -12.08234 -11.93463 -11.84956 -11.53753 -11.26485 -11.07150 -11.01753 -10.82252 -10.32625 -10.13227 -9.00238 -8.31102 -6.42290 1.38045 1.40046 1.55149 2.35527 2.81994 3.00871 3.02218 3.28292 3.83141 3.86575 4.02027 4.11183 4.21912 4.27306 4.29277 4.38462 4.40707 4.44499 4.52808 4.54035 4.54709 4.59432 4.66082 4.72339 4.83669 4.87302 4.90237 4.95894 5.01463 5.07166 5.09501 5.13912 5.20741 5.32187 5.32576 5.35095 5.57167 5.59756 5.99665 6.25334 6.30855 6.54194 6.59781 6.90061 7.30029 8.81724 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.005516 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.398423 B = 5074.466462 C = 5924.192289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.391 6.391 4 C 0.062 3.938 5 C 0.089 3.911 6 H 0.069 0.931 7 C -0.104 4.104 8 C -0.112 4.112 9 C -0.116 4.116 10 C 0.055 3.945 11 N -0.538 5.538 12 C 0.067 3.933 13 C 0.058 3.942 14 O -0.389 6.389 15 C 0.211 3.789 16 C -0.539 4.539 17 H 0.056 0.944 18 C 0.006 3.994 19 N -0.932 5.932 20 Si 0.980 3.020 21 H -0.266 1.266 22 H -0.268 1.268 23 H -0.271 1.271 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.043 0.957 43 H -0.018 1.018 44 H -0.021 1.021 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.454 -4.039 -16.588 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.311 6.311 4 C -0.015 4.015 5 C -0.019 4.019 6 H 0.087 0.913 7 C -0.141 4.141 8 C -0.150 4.150 9 C -0.154 4.154 10 C -0.072 4.072 11 N -0.264 5.264 12 C -0.061 4.061 13 C -0.020 4.020 14 O -0.309 6.309 15 C 0.135 3.865 16 C -0.577 4.577 17 H 0.074 0.926 18 C -0.192 4.192 19 N -0.572 5.572 20 Si 0.803 3.197 21 H -0.190 1.190 22 H -0.193 1.193 23 H -0.196 1.196 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.000 1.000 44 H -0.004 1.004 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.681 -3.924 -16.586 20.662 hybrid contribution 0.173 0.008 0.936 0.952 sum 11.854 -3.917 -15.650 20.019 Atomic orbital electron populations 1.21716 0.94294 1.02773 1.01841 1.22500 0.95539 0.83825 1.00160 1.88070 1.21248 1.26480 1.95294 1.22751 0.81942 0.96198 1.00577 1.21782 0.97200 0.92551 0.90360 0.91346 1.21484 1.00874 0.95451 0.96328 1.21546 1.01426 0.95225 0.96763 1.21560 1.00072 0.99116 0.94619 1.22111 0.97673 0.88321 0.99114 1.61640 1.61462 1.02028 1.01320 1.22102 0.96165 0.99054 0.88750 1.22597 0.83300 0.98522 0.97544 1.87963 1.18278 1.80520 1.44119 1.19757 0.91154 0.91737 0.83810 1.21358 0.92498 1.38064 1.05771 0.92563 1.25936 1.04660 0.94426 0.94156 1.70077 1.36730 1.40552 1.09828 0.85180 0.77422 0.78457 0.78631 1.19048 1.19335 1.19577 0.92035 0.89178 0.94676 0.91531 0.94199 0.90898 0.93401 0.93091 0.89889 0.90974 0.90706 0.93851 0.90272 0.92785 0.93507 0.91496 0.90322 0.94574 0.93882 1.00035 1.00377 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 10.28 71.98 0.74 -3.32 16 2 C 0.06 1.48 6.66 71.98 0.48 1.95 16 3 O -0.39 -12.49 9.44 -148.98 -1.41 -13.90 16 4 C 0.06 1.52 5.16 71.98 0.37 1.89 16 5 C 0.09 2.18 2.23 44.94 0.10 2.28 16 6 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 7 C -0.10 -2.39 5.20 30.65 0.16 -2.23 16 8 C -0.11 -2.28 6.00 30.67 0.18 -2.10 16 9 C -0.12 -2.97 6.09 30.65 0.19 -2.79 16 10 C 0.06 1.57 5.29 86.33 0.46 2.02 16 11 N -0.54 -17.00 4.37 -871.10 -3.81 -20.80 16 12 C 0.07 2.10 5.06 86.30 0.44 2.54 16 13 C 0.06 2.32 5.99 71.98 0.43 2.75 16 14 O -0.39 -20.66 10.27 -148.98 -1.53 -22.19 16 15 C 0.21 12.62 5.69 71.24 0.41 13.02 16 16 C -0.54 -33.99 9.43 25.60 0.24 -33.75 16 17 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 18 C 0.01 0.37 5.46 84.65 0.46 0.83 16 19 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 20 Si 0.98 46.36 29.54 68.60 2.03 48.38 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.17 5.93 -2.39 -0.01 1.16 16 31 H 0.05 1.53 7.57 -2.39 -0.02 1.51 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.78 6.10 -2.39 -0.01 1.77 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 40 H 0.08 2.55 5.61 -2.39 -0.01 2.54 16 41 H 0.04 1.44 6.20 -2.39 -0.01 1.42 16 42 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 43 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 44 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 45 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -73.50 352.71 1.14 -72.36 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.92 Total: 10.79 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 4.65 Total: -16.90 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -3.52 Total: -78.55 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -2.94 Total: -36.09 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -73.50 1.14 -72.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313462735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.691 kcal (2) G-P(sol) polarization free energy of solvation -73.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds