Wall clock time and date at job start Mon Mar 30 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46786 * 2 1 4 4 C 1.42904 * 113.99655 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46760 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.45104 * 175.02891 * 5 4 3 7 7 C 1.53029 * 109.46443 * 55.05395 * 5 4 3 8 8 C 1.53115 * 109.28077 * 180.80156 * 7 5 4 9 9 C 1.53124 * 109.16019 * 57.65781 * 8 7 5 10 10 C 1.53036 * 109.27394 * 302.34493 * 9 8 7 11 11 N 1.46846 * 109.46350 * 294.99933 * 5 4 3 12 12 C 1.46902 * 111.00251 * 305.86113 * 11 5 4 13 13 C 1.52998 * 109.46748 * 301.83207 * 12 11 5 14 14 O 1.42906 * 109.47212 * 65.00172 * 13 12 11 15 15 C 1.42894 * 114.00137 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47263 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99758 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 H 1.08999 * 109.47449 * 299.99855 * 1 2 3 25 25 H 1.08994 * 109.47287 * 60.00547 * 1 2 3 26 26 H 1.09009 * 109.46868 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47154 * 239.99560 * 2 1 3 28 28 H 1.09003 * 109.46693 * 119.99489 * 2 1 3 29 29 H 1.09004 * 109.46728 * 59.99823 * 4 3 2 30 30 H 1.08996 * 109.47065 * 299.99607 * 4 3 2 31 31 H 1.09002 * 109.50284 * 60.86079 * 7 5 4 32 32 H 1.08998 * 109.50553 * 300.74790 * 7 5 4 33 33 H 1.08996 * 109.52494 * 297.75374 * 8 7 5 34 34 H 1.09008 * 109.57453 * 177.59131 * 8 7 5 35 35 H 1.09001 * 109.50464 * 182.40384 * 9 8 7 36 36 H 1.08999 * 109.53670 * 62.30124 * 9 8 7 37 37 H 1.08999 * 109.46567 * 299.15973 * 10 9 8 38 38 H 1.09008 * 109.45152 * 179.18740 * 10 9 8 39 39 H 1.08996 * 109.47044 * 181.83571 * 12 11 5 40 40 H 1.08994 * 109.47663 * 61.83221 * 12 11 5 41 41 H 1.09001 * 109.47860 * 305.00477 * 13 12 11 42 42 H 1.09006 * 109.47541 * 184.99917 * 13 12 11 43 43 H 1.09001 * 109.47678 * 60.00187 * 15 14 13 44 44 H 1.09006 * 109.47375 * 299.99854 * 15 14 13 45 45 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9385 -0.0001 6 1 4.9081 3.0253 0.0894 7 6 3.1577 3.6449 1.1818 8 6 3.5390 5.1277 1.1656 9 6 3.1145 5.7412 -0.1717 10 6 3.7834 4.9739 -1.3144 11 7 3.3866 3.5613 -1.2555 12 6 3.8984 2.8218 -2.4171 13 6 5.4265 2.7734 -2.3579 14 8 5.8353 2.0157 -1.2173 15 6 7.2524 1.9080 -1.0686 16 6 7.5682 1.0937 0.1596 17 1 6.7667 0.6977 0.7657 18 6 8.8801 0.8535 0.5089 19 7 9.8560 1.3352 -0.2294 20 14 9.2714 -0.1553 2.0317 21 1 10.7441 -0.2684 2.1855 22 1 8.6980 0.5117 3.2281 23 1 8.6833 -1.5117 1.8915 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8339 0.9764 -0.8892 30 1 3.8332 0.9768 0.8908 31 1 3.4955 3.1925 2.1142 32 1 2.0752 3.5466 1.1004 33 1 4.6177 5.2278 1.2861 34 1 3.0319 5.6442 1.9806 35 1 3.4216 6.7865 -0.2063 36 1 2.0314 5.6764 -0.2749 37 1 4.8665 5.0512 -1.2188 38 1 3.4718 5.3992 -2.2685 39 1 3.5860 3.3229 -3.3332 40 1 3.5020 1.8066 -2.4050 41 1 5.8195 3.7872 -2.2805 42 1 5.8105 2.3030 -3.2632 43 1 7.6836 2.9037 -0.9646 44 1 7.6739 1.4194 -1.9471 45 1 9.6527 1.8594 -1.0199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313462736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:25 Heat of formation + Delta-G solvation = -104.393544 kcal Electronic energy + Delta-G solvation = -22893.012080 eV Core-core repulsion = 19717.158600 eV Total energy + Delta-G solvation = -3175.853480 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.59450 -37.25312 -36.59493 -33.72708 -32.76222 -32.05886 -30.21970 -28.60959 -26.51110 -25.67019 -23.80963 -22.66115 -22.51091 -21.76982 -20.80526 -19.03976 -17.04287 -16.37700 -16.10615 -15.86560 -15.44202 -14.99122 -14.62279 -14.29883 -13.87261 -13.74989 -13.57379 -13.23222 -12.85741 -12.63945 -12.55101 -12.21632 -12.11662 -11.63692 -11.57924 -11.53827 -11.17251 -11.15536 -10.93272 -10.81406 -10.66099 -10.46942 -10.36011 -10.14836 -10.07558 -9.78938 -9.14251 -8.84663 -8.70259 -8.31922 -7.70606 -6.52129 -4.21796 3.38315 3.40289 3.59121 4.07753 4.19908 4.39518 4.73999 5.02945 5.12647 5.16966 5.18838 5.25702 5.35610 5.41099 5.50698 5.53440 5.61258 5.66945 5.73888 5.79185 5.82988 5.88747 5.92145 5.97696 6.02601 6.08432 6.14232 6.18468 6.22839 6.27681 6.35064 6.40761 6.48962 6.51074 6.70086 6.86457 7.05360 7.43896 7.49034 7.71751 7.79179 8.09516 8.54248 8.72504 9.49041 10.87750 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.006091 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.385449 B = 4595.787078 C = 5322.928535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.079 3.921 5 C 0.087 3.913 6 H 0.097 0.903 7 C -0.108 4.108 8 C -0.122 4.122 9 C -0.112 4.112 10 C 0.051 3.949 11 N -0.520 5.520 12 C 0.056 3.944 13 C 0.019 3.981 14 O -0.377 6.377 15 C 0.183 3.817 16 C -0.595 4.595 17 H 0.059 0.941 18 C 0.018 3.982 19 N -0.909 5.909 20 Si 1.075 2.925 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.286 1.286 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.039 0.961 43 H -0.008 1.008 44 H -0.007 1.007 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.394 3.742 -1.027 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.299 6.299 4 C 0.002 3.998 5 C -0.021 4.021 6 H 0.114 0.886 7 C -0.146 4.146 8 C -0.160 4.160 9 C -0.150 4.150 10 C -0.077 4.077 11 N -0.244 5.244 12 C -0.072 4.072 13 C -0.060 4.060 14 O -0.296 6.296 15 C 0.109 3.891 16 C -0.633 4.633 17 H 0.078 0.922 18 C -0.185 4.185 19 N -0.545 5.545 20 Si 0.902 3.098 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.010 0.990 44 H 0.011 0.989 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.908 3.192 0.004 15.246 hybrid contribution 0.164 0.534 -1.285 1.401 sum -14.744 3.727 -1.281 15.262 Atomic orbital electron populations 1.21697 0.94412 1.01505 1.02761 1.22343 0.94962 0.85219 0.99627 1.87923 1.22058 1.24587 1.95366 1.22559 0.79702 0.96559 1.00950 1.21981 0.99999 0.91473 0.88632 0.88562 1.21547 1.01589 0.94263 0.97227 1.21588 1.00978 0.96464 0.96937 1.21532 1.00995 0.97927 0.94517 1.22086 0.97811 0.89146 0.98627 1.62126 1.58972 1.01290 1.02033 1.22315 0.91105 1.00062 0.93709 1.23121 0.96695 0.95489 0.90738 1.87996 1.25648 1.72752 1.43234 1.20285 0.76741 0.95187 0.96920 1.21841 0.94903 1.36026 1.10497 0.92234 1.25896 0.91863 0.97727 1.03032 1.70806 1.34289 1.33284 1.16146 0.83451 0.76255 0.75701 0.74348 1.20589 1.21162 1.21214 0.92208 0.92087 0.91785 0.94020 0.94053 0.91903 0.93489 0.92144 0.90904 0.92301 0.92356 0.92228 0.91408 0.94815 0.91431 0.90320 0.89904 0.94401 0.94257 0.98986 0.98884 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.06 0.75 6.66 37.16 0.25 1.00 16 3 O -0.38 -6.19 9.40 -35.23 -0.33 -6.52 16 4 C 0.08 1.39 4.51 37.16 0.17 1.56 16 5 C 0.09 1.51 1.56 -67.73 -0.11 1.40 16 6 H 0.10 2.02 5.58 -51.93 -0.29 1.73 16 7 C -0.11 -1.69 5.19 -26.66 -0.14 -1.83 16 8 C -0.12 -1.69 6.00 -26.61 -0.16 -1.85 16 9 C -0.11 -1.44 6.09 -26.65 -0.16 -1.60 16 10 C 0.05 0.73 5.06 -3.83 -0.02 0.72 16 11 N -0.52 -8.27 4.64 -226.69 -1.05 -9.32 16 12 C 0.06 0.88 5.51 -3.82 -0.02 0.85 16 13 C 0.02 0.34 5.75 37.16 0.21 0.55 16 14 O -0.38 -8.41 5.25 -35.23 -0.19 -8.60 16 15 C 0.18 4.82 5.00 36.01 0.18 5.00 16 16 C -0.59 -17.03 9.43 -34.44 -0.32 -17.35 16 17 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 18 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 19 N -0.91 -27.55 13.65 55.43 0.76 -26.79 16 20 Si 1.08 25.10 29.90 -169.99 -5.08 20.02 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.19 5.09 -51.93 -0.26 0.92 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.15 7.54 -51.93 -0.39 0.76 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.03 0.54 6.65 -51.93 -0.35 0.19 16 38 H 0.07 0.85 8.06 -51.92 -0.42 0.44 16 39 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 40 H 0.08 1.34 6.21 -51.93 -0.32 1.02 16 41 H 0.04 0.68 6.46 -51.93 -0.34 0.35 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H -0.01 -0.21 8.01 -51.93 -0.42 -0.62 16 44 H -0.01 -0.18 8.01 -51.93 -0.42 -0.59 16 45 H 0.27 8.05 7.22 -40.82 -0.29 7.76 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -30.28 343.08 -8.75 -39.03 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -8.19 Total: -0.64 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 0.16 Total: -12.34 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.30 Total: -36.11 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.52 Total: -15.12 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.28 -8.75 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313462736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.360 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds