Wall clock time and date at job start Mon Mar 30 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46786 * 2 1 4 4 C 1.42904 * 113.99655 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46760 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.45104 * 175.02891 * 5 4 3 7 7 C 1.53029 * 109.46443 * 55.05395 * 5 4 3 8 8 C 1.53115 * 109.28077 * 180.80156 * 7 5 4 9 9 C 1.53124 * 109.16019 * 57.65781 * 8 7 5 10 10 C 1.53036 * 109.27394 * 302.34493 * 9 8 7 11 11 N 1.46846 * 109.46350 * 294.99933 * 5 4 3 12 12 C 1.46902 * 111.00251 * 305.86113 * 11 5 4 13 13 C 1.52998 * 109.46748 * 301.83207 * 12 11 5 14 14 O 1.42906 * 109.47212 * 65.00172 * 13 12 11 15 15 C 1.42894 * 114.00137 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47263 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99758 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 H 1.08999 * 109.47449 * 299.99855 * 1 2 3 25 25 H 1.08994 * 109.47287 * 60.00547 * 1 2 3 26 26 H 1.09009 * 109.46868 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47154 * 239.99560 * 2 1 3 28 28 H 1.09003 * 109.46693 * 119.99489 * 2 1 3 29 29 H 1.09004 * 109.46728 * 59.99823 * 4 3 2 30 30 H 1.08996 * 109.47065 * 299.99607 * 4 3 2 31 31 H 1.09002 * 109.50284 * 60.86079 * 7 5 4 32 32 H 1.08998 * 109.50553 * 300.74790 * 7 5 4 33 33 H 1.08996 * 109.52494 * 297.75374 * 8 7 5 34 34 H 1.09008 * 109.57453 * 177.59131 * 8 7 5 35 35 H 1.09001 * 109.50464 * 182.40384 * 9 8 7 36 36 H 1.08999 * 109.53670 * 62.30124 * 9 8 7 37 37 H 1.08999 * 109.46567 * 299.15973 * 10 9 8 38 38 H 1.09008 * 109.45152 * 179.18740 * 10 9 8 39 39 H 1.08996 * 109.47044 * 181.83571 * 12 11 5 40 40 H 1.08994 * 109.47663 * 61.83221 * 12 11 5 41 41 H 1.09001 * 109.47860 * 305.00477 * 13 12 11 42 42 H 1.09006 * 109.47541 * 184.99917 * 13 12 11 43 43 H 1.09001 * 109.47678 * 60.00187 * 15 14 13 44 44 H 1.09006 * 109.47375 * 299.99854 * 15 14 13 45 45 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9385 -0.0001 6 1 4.9081 3.0253 0.0894 7 6 3.1577 3.6449 1.1818 8 6 3.5390 5.1277 1.1656 9 6 3.1145 5.7412 -0.1717 10 6 3.7834 4.9739 -1.3144 11 7 3.3866 3.5613 -1.2555 12 6 3.8984 2.8218 -2.4171 13 6 5.4265 2.7734 -2.3579 14 8 5.8353 2.0157 -1.2173 15 6 7.2524 1.9080 -1.0686 16 6 7.5682 1.0937 0.1596 17 1 6.7667 0.6977 0.7657 18 6 8.8801 0.8535 0.5089 19 7 9.8560 1.3352 -0.2294 20 14 9.2714 -0.1553 2.0317 21 1 10.7441 -0.2684 2.1855 22 1 8.6980 0.5117 3.2281 23 1 8.6833 -1.5117 1.8915 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8339 0.9764 -0.8892 30 1 3.8332 0.9768 0.8908 31 1 3.4955 3.1925 2.1142 32 1 2.0752 3.5466 1.1004 33 1 4.6177 5.2278 1.2861 34 1 3.0319 5.6442 1.9806 35 1 3.4216 6.7865 -0.2063 36 1 2.0314 5.6764 -0.2749 37 1 4.8665 5.0512 -1.2188 38 1 3.4718 5.3992 -2.2685 39 1 3.5860 3.3229 -3.3332 40 1 3.5020 1.8066 -2.4050 41 1 5.8195 3.7872 -2.2805 42 1 5.8105 2.3030 -3.2632 43 1 7.6836 2.9037 -0.9646 44 1 7.6739 1.4194 -1.9471 45 1 9.6527 1.8594 -1.0199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313462736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:24 Heat of formation + Delta-G solvation = -123.489676 kcal Electronic energy + Delta-G solvation = -22893.840151 eV Core-core repulsion = 19717.158600 eV Total energy + Delta-G solvation = -3176.681551 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.94401 -38.67236 -38.12719 -35.47186 -34.51559 -33.22722 -31.31424 -30.14988 -28.44449 -27.03361 -25.13848 -24.77548 -23.58543 -23.11740 -22.03253 -20.38412 -19.16779 -17.72933 -17.69983 -17.23141 -16.85387 -16.42250 -15.89975 -15.77124 -15.51618 -15.42720 -14.80277 -14.58184 -14.26354 -14.21088 -13.93564 -13.65087 -13.37137 -13.14707 -13.04904 -12.74361 -12.63950 -12.59865 -12.35760 -12.13094 -12.10834 -11.95451 -11.93324 -11.57112 -11.25219 -11.06995 -10.86106 -10.82370 -10.45974 -10.24448 -9.09404 -8.84332 -6.55848 1.49225 1.57393 1.77998 2.45298 2.82056 2.87910 3.01672 3.13953 3.82730 3.91396 4.00004 4.08474 4.14964 4.18898 4.29369 4.33177 4.35415 4.45831 4.49441 4.51809 4.54893 4.58098 4.59975 4.74419 4.83236 4.84749 4.86913 4.94389 4.98676 5.06348 5.07602 5.10175 5.12491 5.27733 5.30783 5.31328 5.56171 5.64507 5.88951 6.13040 6.23144 6.31219 6.41889 6.58411 7.24781 8.55949 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.006091 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.385449 B = 4595.787078 C = 5322.928535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.045 3.955 3 O -0.385 6.385 4 C 0.089 3.911 5 C 0.090 3.910 6 H 0.058 0.942 7 C -0.103 4.103 8 C -0.121 4.121 9 C -0.106 4.106 10 C 0.048 3.952 11 N -0.517 5.517 12 C 0.064 3.936 13 C 0.013 3.987 14 O -0.378 6.378 15 C 0.196 3.804 16 C -0.613 4.613 17 H 0.055 0.945 18 C -0.028 4.028 19 N -0.929 5.929 20 Si 1.122 2.878 21 H -0.277 1.277 22 H -0.267 1.267 23 H -0.267 1.267 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.013 0.987 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.045 0.955 43 H -0.026 1.026 44 H -0.023 1.023 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.308 3.995 -0.662 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 O -0.304 6.304 4 C 0.012 3.988 5 C -0.018 4.018 6 H 0.075 0.925 7 C -0.141 4.141 8 C -0.159 4.159 9 C -0.144 4.144 10 C -0.080 4.080 11 N -0.241 5.241 12 C -0.065 4.065 13 C -0.065 4.065 14 O -0.298 6.298 15 C 0.121 3.879 16 C -0.650 4.650 17 H 0.073 0.927 18 C -0.226 4.226 19 N -0.566 5.566 20 Si 0.941 3.059 21 H -0.202 1.202 22 H -0.192 1.192 23 H -0.192 1.192 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.031 0.969 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.063 0.937 43 H -0.008 1.008 44 H -0.006 1.006 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.857 3.461 0.344 17.212 hybrid contribution 0.682 0.472 -1.472 1.690 sum -16.175 3.933 -1.128 16.684 Atomic orbital electron populations 1.21679 0.92016 1.03117 1.02775 1.22611 0.96870 0.83903 0.99737 1.87904 1.20731 1.26475 1.95317 1.22306 0.80675 0.96539 0.99277 1.21785 0.97769 0.91878 0.90406 0.92496 1.21493 1.01275 0.95375 0.95991 1.21593 1.00136 0.95456 0.98683 1.21527 1.01241 0.98710 0.92920 1.22227 0.96783 0.88316 1.00658 1.62182 1.58426 1.02150 1.01306 1.22375 0.88656 1.00354 0.95083 1.23403 0.98798 0.94914 0.89415 1.88024 1.22897 1.73593 1.45278 1.19899 0.78912 0.93544 0.95537 1.22165 0.95199 1.36373 1.11284 0.92699 1.27490 0.91799 0.97957 1.05315 1.70932 1.34877 1.34357 1.16440 0.82896 0.76435 0.75244 0.71325 1.20245 1.19235 1.19183 0.92098 0.92102 0.89405 0.93988 0.93921 0.93563 0.95200 0.92851 0.90681 0.94020 0.90168 0.90065 0.90568 0.96902 0.89051 0.86932 0.90559 0.94373 0.93668 1.00826 1.00560 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 10.28 71.98 0.74 -1.99 16 2 C 0.05 1.18 6.66 71.98 0.48 1.66 16 3 O -0.38 -12.33 9.40 -148.98 -1.40 -13.73 16 4 C 0.09 3.20 4.51 71.98 0.32 3.52 16 5 C 0.09 3.16 1.56 44.94 0.07 3.23 16 6 H 0.06 2.49 5.58 -2.39 -0.01 2.48 16 7 C -0.10 -3.18 5.19 30.64 0.16 -3.03 16 8 C -0.12 -3.21 6.00 30.67 0.18 -3.03 16 9 C -0.11 -2.48 6.09 30.65 0.19 -2.30 16 10 C 0.05 1.29 5.06 86.33 0.44 1.73 16 11 N -0.52 -15.90 4.64 -871.13 -4.04 -19.95 16 12 C 0.06 1.91 5.51 86.30 0.48 2.38 16 13 C 0.01 0.48 5.75 71.98 0.41 0.90 16 14 O -0.38 -17.52 5.25 -148.98 -0.78 -18.30 16 15 C 0.20 10.76 5.00 71.24 0.36 11.12 16 16 C -0.61 -36.02 9.43 25.60 0.24 -35.78 16 17 H 0.05 3.21 7.81 -2.91 -0.02 3.19 16 18 C -0.03 -1.63 5.46 84.65 0.46 -1.16 16 19 N -0.93 -57.41 13.65 21.45 0.29 -57.12 16 20 Si 1.12 50.18 29.90 68.60 2.05 52.23 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.80 5.09 -2.39 -0.01 1.79 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 2.28 7.54 -2.39 -0.02 2.26 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.01 0.40 6.65 -2.39 -0.02 0.39 16 38 H 0.09 2.04 8.06 -2.38 -0.02 2.02 16 39 H 0.11 2.65 8.06 -2.39 -0.02 2.63 16 40 H 0.08 2.42 6.21 -2.39 -0.01 2.40 16 41 H 0.04 1.40 6.46 -2.39 -0.02 1.38 16 42 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 43 H -0.03 -1.49 8.01 -2.39 -0.02 -1.51 16 44 H -0.02 -1.33 8.01 -2.38 -0.02 -1.35 16 45 H 0.25 15.91 7.22 -92.71 -0.67 15.24 16 Total: -1.00 -66.28 343.08 1.68 -64.60 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.03 Total: 15.00 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 4.53 Total: -22.74 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -3.75 Total: -77.07 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -2.18 Total: -32.03 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.05 Total: 52.23 kcal Total: -66.28 1.68 -64.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313462736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.886 kcal (2) G-P(sol) polarization free energy of solvation -66.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds