Wall clock time and date at job start Mon Mar 30 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99647 * 2 1 4 4 C 1.53005 * 109.46745 * 184.70176 * 3 2 1 5 5 N 1.46904 * 109.47050 * 69.21580 * 4 3 2 6 6 C 1.46903 * 111.00232 * 286.18201 * 5 4 3 7 7 C 1.50697 * 109.46683 * 302.52808 * 6 5 4 8 8 H 1.07991 * 120.00629 * 4.56624 * 7 6 5 9 9 C 1.37884 * 119.99669 * 184.56010 * 7 6 5 10 10 N 1.31515 * 119.99791 * 354.84308 * 9 7 6 11 11 Si 1.86791 * 120.00125 * 174.84210 * 9 7 6 12 12 H 1.48495 * 109.47247 * 5.00557 * 11 9 7 13 13 H 1.48498 * 109.47238 * 125.00178 * 11 9 7 14 14 H 1.48503 * 109.47469 * 245.00487 * 11 9 7 15 15 C 1.46898 * 110.99801 * 162.22344 * 5 4 3 16 16 C 1.52997 * 109.47194 * 189.99950 * 15 5 4 17 17 H 1.09004 * 109.47429 * 305.00785 * 16 15 5 18 18 C 1.53007 * 109.47032 * 65.00195 * 16 15 5 19 19 C 1.52997 * 109.47032 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47336 * 299.99814 * 19 18 16 21 21 C 1.53000 * 109.46596 * 60.00463 * 20 19 18 22 22 C 1.52998 * 109.47520 * 185.00513 * 16 15 5 23 23 H 1.09004 * 109.46992 * 300.00540 * 22 16 15 24 24 O 1.42896 * 109.47223 * 59.99896 * 22 16 15 25 25 H 1.09006 * 109.46913 * 304.93726 * 1 2 3 26 26 H 1.08994 * 109.47432 * 64.93426 * 1 2 3 27 27 H 1.09001 * 109.46920 * 184.94195 * 1 2 3 28 28 H 1.08994 * 109.47545 * 64.70625 * 3 2 1 29 29 H 1.08999 * 109.47378 * 304.70003 * 3 2 1 30 30 H 1.08997 * 109.47233 * 309.22197 * 4 3 2 31 31 H 1.08994 * 109.47329 * 189.21760 * 4 3 2 32 32 H 1.09000 * 109.46774 * 62.52582 * 6 5 4 33 33 H 1.08995 * 109.46625 * 182.52755 * 6 5 4 34 34 H 0.96997 * 119.99966 * 179.97438 * 10 9 7 35 35 H 1.09007 * 109.46635 * 70.00483 * 15 5 4 36 36 H 1.08997 * 109.47724 * 310.00806 * 15 5 4 37 37 H 1.08995 * 109.47070 * 300.00352 * 18 16 15 38 38 H 1.09004 * 109.46531 * 60.00040 * 18 16 15 39 39 H 1.09000 * 109.46586 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.47114 * 60.00525 * 19 18 16 41 41 H 1.08996 * 109.47599 * 300.00414 * 20 19 18 42 42 H 1.09000 * 109.47111 * 179.97438 * 20 19 18 43 43 H 1.09005 * 109.46919 * 179.97438 * 21 20 19 44 44 H 1.08995 * 109.47539 * 60.00109 * 21 20 19 45 45 H 0.96694 * 114.00256 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5310 1.1867 -0.1182 5 7 3.8815 0.7021 -1.4601 6 6 3.5729 -0.7273 -1.6009 7 6 4.3103 -1.5069 -0.5429 8 1 4.8857 -0.9868 0.2085 9 6 4.2503 -2.8844 -0.5343 10 7 3.4697 -3.5139 -1.3852 11 14 5.2777 -3.8564 0.6858 12 1 5.9714 -2.9197 1.6058 13 1 4.3947 -4.7569 1.4698 14 1 6.2838 -4.6655 -0.0479 15 6 5.2939 0.9681 -1.7636 16 6 5.5603 0.6822 -3.2428 17 1 5.2495 -0.3357 -3.4779 18 6 4.7686 1.6688 -4.1036 19 6 5.0355 1.3833 -5.5828 20 6 6.5299 1.5403 -5.8710 21 6 7.3215 0.5537 -5.0103 22 6 7.0547 0.8386 -3.5315 23 1 7.3655 1.8566 -3.2964 24 8 7.7941 -0.0827 -2.7276 25 1 -0.3633 0.5886 0.8425 26 1 -0.3634 0.4353 -0.9308 27 1 -0.3633 -1.0239 0.0885 28 1 1.7569 1.8160 0.9291 29 1 1.6235 1.8754 -0.8449 30 1 3.8998 0.4844 0.6293 31 1 3.9857 2.1636 0.0454 32 1 2.5001 -0.8805 -1.4837 33 1 3.8833 -1.0704 -2.5878 34 1 3.4277 -4.4829 -1.3794 35 1 5.9248 0.3250 -1.1499 36 1 5.5214 2.0122 -1.5485 37 1 3.7040 1.5573 -3.8979 38 1 5.0794 2.6868 -3.8685 39 1 4.4718 2.0864 -6.1959 40 1 4.7250 0.3653 -5.8181 41 1 6.8404 2.5582 -5.6356 42 1 6.7201 1.3364 -6.9247 43 1 8.3862 0.6652 -5.2159 44 1 7.0111 -0.4643 -5.2456 45 1 8.7511 -0.0394 -2.8591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328150649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:57 Heat of formation + Delta-G solvation = -107.356325 kcal Electronic energy + Delta-G solvation = -22857.262407 eV Core-core repulsion = 19681.280451 eV Total energy + Delta-G solvation = -3175.981956 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.04366 -37.50675 -35.82231 -35.09598 -32.26947 -31.26685 -29.34759 -28.63028 -26.59244 -25.51731 -24.04465 -22.64190 -22.17728 -20.81101 -19.60920 -19.02835 -16.86455 -16.35673 -15.81098 -15.51577 -14.92849 -14.60246 -14.42905 -14.08340 -13.93710 -13.70140 -13.34258 -13.13206 -12.56811 -12.42326 -12.33927 -11.85956 -11.58684 -11.28073 -11.07868 -11.01553 -10.93494 -10.79602 -10.62591 -10.55768 -10.41239 -10.25192 -9.94828 -9.84384 -9.67036 -9.61681 -9.30197 -9.19965 -8.81468 -8.08979 -6.93936 -5.77037 -3.79094 3.42062 3.48869 3.53060 4.56858 4.58122 4.62928 4.88216 4.99111 5.14103 5.31405 5.48635 5.54041 5.55137 5.67324 5.70046 5.79635 5.82725 5.84842 5.89463 5.97931 6.01404 6.03733 6.11825 6.21057 6.24996 6.28358 6.35101 6.41035 6.42895 6.54984 6.60090 6.82730 6.89522 7.06665 7.12197 7.53345 7.89387 7.98182 8.06227 8.23401 8.31385 8.55195 8.60194 9.27576 9.82720 11.29261 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.007401 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.554698 B = 3782.148708 C = 5040.184094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.353 6.353 3 C 0.073 3.927 4 C 0.055 3.945 5 N -0.539 5.539 6 C 0.182 3.818 7 C -0.521 4.521 8 H 0.051 0.949 9 C 0.065 3.935 10 N -0.893 5.893 11 Si 0.881 3.119 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.286 1.286 15 C 0.070 3.930 16 C -0.072 4.072 17 H 0.088 0.912 18 C -0.101 4.101 19 C -0.124 4.124 20 C -0.114 4.114 21 C -0.151 4.151 22 C 0.112 3.888 23 H 0.044 0.956 24 O -0.554 6.554 25 H 0.026 0.974 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.256 0.744 35 H 0.052 0.948 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.700 11.940 -5.124 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C -0.004 4.004 4 C -0.074 4.074 5 N -0.263 5.263 6 C 0.057 3.943 7 C -0.561 4.561 8 H 0.069 0.931 9 C -0.136 4.136 10 N -0.533 5.533 11 Si 0.710 3.290 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.213 1.213 15 C -0.058 4.058 16 C -0.091 4.091 17 H 0.106 0.894 18 C -0.138 4.138 19 C -0.161 4.161 20 C -0.151 4.151 21 C -0.189 4.189 22 C 0.052 3.948 23 H 0.062 0.938 24 O -0.357 6.357 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.852 11.703 -5.309 12.983 hybrid contribution 1.496 -0.772 1.052 1.985 sum 3.347 10.930 -4.257 12.198 Atomic orbital electron populations 1.22626 0.83448 1.01942 0.98495 1.88338 1.17409 1.26583 1.94726 1.22467 0.94772 0.85201 0.97982 1.21984 0.93065 0.98851 0.93469 1.62610 1.17639 1.21813 1.24275 1.19972 0.98328 0.80164 0.95857 1.21629 1.29522 0.91664 1.13270 0.93090 1.24835 0.95324 0.97805 0.95653 1.69967 1.38110 1.07935 1.37338 0.86713 0.80426 0.80248 0.81571 1.20164 1.21478 1.21257 1.21829 0.90988 0.98082 0.94944 1.21098 0.90753 1.01477 0.95786 0.89361 1.21442 1.01711 0.97897 0.92765 1.21614 0.95266 1.01823 0.97439 1.21461 0.95911 0.98913 0.98846 1.22261 0.99412 1.00818 0.96373 1.21815 0.93285 0.91187 0.88475 0.93765 1.86746 1.21199 1.62053 1.65716 0.95498 0.94962 0.90271 0.94840 0.93763 0.92269 0.92285 0.92611 0.95684 0.93464 0.93015 0.94051 0.90052 0.93069 0.92455 0.91834 0.92355 0.92414 0.92521 0.91052 0.79015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.65 16 2 O -0.35 -7.55 7.94 -35.23 -0.28 -7.83 16 3 C 0.07 1.34 6.21 37.16 0.23 1.57 16 4 C 0.05 1.10 5.33 -3.82 -0.02 1.08 16 5 N -0.54 -11.63 4.11 -236.07 -0.97 -12.60 16 6 C 0.18 4.78 4.57 -4.98 -0.02 4.76 16 7 C -0.52 -14.93 7.35 -34.44 -0.25 -15.18 16 8 H 0.05 1.48 5.96 -52.49 -0.31 1.17 16 9 C 0.06 1.91 5.45 -17.82 -0.10 1.81 16 10 N -0.89 -27.37 13.29 55.43 0.74 -26.64 16 11 Si 0.88 22.83 29.54 -169.99 -5.02 17.81 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 C 0.07 1.40 4.12 -3.83 -0.02 1.39 16 16 C -0.07 -1.31 1.86 -90.62 -0.17 -1.48 16 17 H 0.09 1.96 6.22 -51.93 -0.32 1.64 16 18 C -0.10 -1.55 5.09 -26.73 -0.14 -1.68 16 19 C -0.12 -1.65 5.92 -26.73 -0.16 -1.80 16 20 C -0.11 -1.34 5.92 -26.73 -0.16 -1.50 16 21 C -0.15 -1.98 5.54 -26.76 -0.15 -2.13 16 22 C 0.11 1.72 2.90 -26.76 -0.08 1.65 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 O -0.55 -9.45 12.56 -35.23 -0.44 -9.89 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.36 5.87 -51.93 -0.31 1.05 16 31 H 0.06 1.01 7.77 -51.93 -0.40 0.61 16 32 H 0.06 1.60 5.69 -51.93 -0.30 1.30 16 33 H 0.03 0.72 6.11 -51.93 -0.32 0.40 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.05 1.21 6.23 -51.93 -0.32 0.89 16 36 H 0.04 0.74 7.84 -51.93 -0.41 0.33 16 37 H 0.08 1.39 7.75 -51.93 -0.40 0.98 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.36 4.31 9.08 45.56 0.41 4.73 16 LS Contribution 342.71 15.07 5.16 5.16 Total: -1.00 -32.48 342.71 -8.03 -40.51 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.31 Total: 3.37 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.23 Total: -39.24 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.72 Total: -17.72 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.48 -8.03 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328150649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.848 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds