Wall clock time and date at job start Mon Mar 30 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99647 * 2 1 4 4 C 1.53005 * 109.46745 * 184.70176 * 3 2 1 5 5 N 1.46904 * 109.47050 * 69.21580 * 4 3 2 6 6 C 1.46903 * 111.00232 * 286.18201 * 5 4 3 7 7 C 1.50697 * 109.46683 * 302.52808 * 6 5 4 8 8 H 1.07991 * 120.00629 * 4.56624 * 7 6 5 9 9 C 1.37884 * 119.99669 * 184.56010 * 7 6 5 10 10 N 1.31515 * 119.99791 * 354.84308 * 9 7 6 11 11 Si 1.86791 * 120.00125 * 174.84210 * 9 7 6 12 12 H 1.48495 * 109.47247 * 5.00557 * 11 9 7 13 13 H 1.48498 * 109.47238 * 125.00178 * 11 9 7 14 14 H 1.48503 * 109.47469 * 245.00487 * 11 9 7 15 15 C 1.46898 * 110.99801 * 162.22344 * 5 4 3 16 16 C 1.52997 * 109.47194 * 189.99950 * 15 5 4 17 17 H 1.09004 * 109.47429 * 305.00785 * 16 15 5 18 18 C 1.53007 * 109.47032 * 65.00195 * 16 15 5 19 19 C 1.52997 * 109.47032 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47336 * 299.99814 * 19 18 16 21 21 C 1.53000 * 109.46596 * 60.00463 * 20 19 18 22 22 C 1.52998 * 109.47520 * 185.00513 * 16 15 5 23 23 H 1.09004 * 109.46992 * 300.00540 * 22 16 15 24 24 O 1.42896 * 109.47223 * 59.99896 * 22 16 15 25 25 H 1.09006 * 109.46913 * 304.93726 * 1 2 3 26 26 H 1.08994 * 109.47432 * 64.93426 * 1 2 3 27 27 H 1.09001 * 109.46920 * 184.94195 * 1 2 3 28 28 H 1.08994 * 109.47545 * 64.70625 * 3 2 1 29 29 H 1.08999 * 109.47378 * 304.70003 * 3 2 1 30 30 H 1.08997 * 109.47233 * 309.22197 * 4 3 2 31 31 H 1.08994 * 109.47329 * 189.21760 * 4 3 2 32 32 H 1.09000 * 109.46774 * 62.52582 * 6 5 4 33 33 H 1.08995 * 109.46625 * 182.52755 * 6 5 4 34 34 H 0.96997 * 119.99966 * 179.97438 * 10 9 7 35 35 H 1.09007 * 109.46635 * 70.00483 * 15 5 4 36 36 H 1.08997 * 109.47724 * 310.00806 * 15 5 4 37 37 H 1.08995 * 109.47070 * 300.00352 * 18 16 15 38 38 H 1.09004 * 109.46531 * 60.00040 * 18 16 15 39 39 H 1.09000 * 109.46586 * 180.02562 * 19 18 16 40 40 H 1.08996 * 109.47114 * 60.00525 * 19 18 16 41 41 H 1.08996 * 109.47599 * 300.00414 * 20 19 18 42 42 H 1.09000 * 109.47111 * 179.97438 * 20 19 18 43 43 H 1.09005 * 109.46919 * 179.97438 * 21 20 19 44 44 H 1.08995 * 109.47539 * 60.00109 * 21 20 19 45 45 H 0.96694 * 114.00256 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5310 1.1867 -0.1182 5 7 3.8815 0.7021 -1.4601 6 6 3.5729 -0.7273 -1.6009 7 6 4.3103 -1.5069 -0.5429 8 1 4.8857 -0.9868 0.2085 9 6 4.2503 -2.8844 -0.5343 10 7 3.4697 -3.5139 -1.3852 11 14 5.2777 -3.8564 0.6858 12 1 5.9714 -2.9197 1.6058 13 1 4.3947 -4.7569 1.4698 14 1 6.2838 -4.6655 -0.0479 15 6 5.2939 0.9681 -1.7636 16 6 5.5603 0.6822 -3.2428 17 1 5.2495 -0.3357 -3.4779 18 6 4.7686 1.6688 -4.1036 19 6 5.0355 1.3833 -5.5828 20 6 6.5299 1.5403 -5.8710 21 6 7.3215 0.5537 -5.0103 22 6 7.0547 0.8386 -3.5315 23 1 7.3655 1.8566 -3.2964 24 8 7.7941 -0.0827 -2.7276 25 1 -0.3633 0.5886 0.8425 26 1 -0.3634 0.4353 -0.9308 27 1 -0.3633 -1.0239 0.0885 28 1 1.7569 1.8160 0.9291 29 1 1.6235 1.8754 -0.8449 30 1 3.8998 0.4844 0.6293 31 1 3.9857 2.1636 0.0454 32 1 2.5001 -0.8805 -1.4837 33 1 3.8833 -1.0704 -2.5878 34 1 3.4277 -4.4829 -1.3794 35 1 5.9248 0.3250 -1.1499 36 1 5.5214 2.0122 -1.5485 37 1 3.7040 1.5573 -3.8979 38 1 5.0794 2.6868 -3.8685 39 1 4.4718 2.0864 -6.1959 40 1 4.7250 0.3653 -5.8181 41 1 6.8404 2.5582 -5.6356 42 1 6.7201 1.3364 -6.9247 43 1 8.3862 0.6652 -5.2159 44 1 7.0111 -0.4643 -5.2456 45 1 8.7511 -0.0394 -2.8591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328150649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:56 Heat of formation + Delta-G solvation = -131.533503 kcal Electronic energy + Delta-G solvation = -22858.310808 eV Core-core repulsion = 19681.280451 eV Total energy + Delta-G solvation = -3177.030357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.38375 -39.02832 -37.44593 -36.34203 -34.46970 -32.63872 -30.57856 -30.24564 -28.47233 -26.93961 -25.80463 -24.35556 -23.38382 -22.14270 -21.09697 -20.55661 -18.47004 -18.12402 -17.36006 -17.09975 -16.62506 -16.20873 -15.83059 -15.50939 -15.48822 -15.03020 -14.70173 -14.58094 -14.33215 -13.90861 -13.68229 -13.34330 -13.10604 -12.96977 -12.64892 -12.63340 -12.48254 -12.35161 -12.24630 -12.15280 -11.94001 -11.77066 -11.56759 -11.45820 -11.34592 -11.11727 -10.88206 -10.54445 -10.53879 -10.14709 -8.85220 -8.01791 -6.13466 1.33193 1.34420 1.45192 2.43419 3.16958 3.23863 3.38352 3.48478 3.85631 3.93807 4.18866 4.25083 4.34821 4.38686 4.47766 4.53227 4.54849 4.59973 4.61947 4.64313 4.67704 4.72474 4.81176 4.88316 4.92411 4.98615 5.13811 5.16406 5.23322 5.27018 5.34363 5.36839 5.44727 5.49364 5.59127 5.64163 5.68637 6.01952 6.25068 6.40226 6.57014 6.74866 7.04708 7.06512 7.51757 9.01040 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.007401 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.554698 B = 3782.148708 C = 5040.184094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.401 6.401 3 C 0.074 3.926 4 C 0.051 3.949 5 N -0.531 5.531 6 C 0.206 3.794 7 C -0.522 4.522 8 H 0.043 0.957 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.944 3.056 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.282 1.282 15 C 0.073 3.927 16 C -0.071 4.071 17 H 0.033 0.967 18 C -0.093 4.093 19 C -0.123 4.123 20 C -0.108 4.108 21 C -0.146 4.146 22 C 0.112 3.888 23 H 0.071 0.929 24 O -0.587 6.587 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.024 0.976 31 H 0.095 0.905 32 H 0.033 0.967 33 H -0.008 1.008 34 H 0.257 0.743 35 H 0.012 0.988 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.734 14.438 -5.225 15.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.320 6.320 3 C -0.003 4.003 4 C -0.077 4.077 5 N -0.254 5.254 6 C 0.079 3.921 7 C -0.562 4.562 8 H 0.061 0.939 9 C -0.189 4.189 10 N -0.569 5.569 11 Si 0.771 3.229 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.208 1.208 15 C -0.055 4.055 16 C -0.090 4.090 17 H 0.052 0.948 18 C -0.130 4.130 19 C -0.160 4.160 20 C -0.145 4.145 21 C -0.184 4.184 22 C 0.053 3.947 23 H 0.089 0.911 24 O -0.395 6.395 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.113 0.887 32 H 0.051 0.949 33 H 0.010 0.990 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.898 14.220 -5.407 15.487 hybrid contribution 1.156 -1.504 1.106 2.196 sum 4.055 12.715 -4.301 14.022 Atomic orbital electron populations 1.22751 0.81310 1.02285 1.00325 1.88256 1.20017 1.28655 1.95114 1.22556 0.93234 0.84457 1.00032 1.22146 0.94909 0.99511 0.91144 1.62565 1.18775 1.18511 1.25577 1.19478 0.96380 0.82841 0.93388 1.21853 1.28997 0.92096 1.13237 0.93873 1.25630 0.96572 0.99023 0.97638 1.70087 1.39569 1.08190 1.39020 0.85721 0.78933 0.78822 0.79443 1.19675 1.20625 1.20827 1.21871 0.89071 0.98839 0.95709 1.21053 0.93697 0.99203 0.95089 0.94837 1.21348 0.99757 0.98157 0.93751 1.21602 0.97243 1.01033 0.96149 1.21456 0.93946 0.99558 0.99549 1.22219 1.01444 0.99773 0.94981 1.21859 0.91021 0.92088 0.89724 0.91097 1.86694 1.23276 1.62935 1.66567 0.92534 0.93880 0.91018 0.91698 0.92596 0.95729 0.88661 0.94937 0.99010 0.93372 0.96934 0.90872 0.92412 0.90552 0.90152 0.94272 0.90078 0.90599 0.89639 0.93867 0.76545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 11.01 113.37 1.25 2.22 16 2 O -0.40 -17.35 7.94 -148.98 -1.18 -18.54 16 3 C 0.07 2.61 6.21 71.98 0.45 3.06 16 4 C 0.05 2.02 5.33 86.30 0.46 2.48 16 5 N -0.53 -23.39 4.11 -900.79 -3.70 -27.09 16 6 C 0.21 11.40 4.57 85.56 0.39 11.79 16 7 C -0.52 -31.19 7.35 25.60 0.19 -31.01 16 8 H 0.04 2.60 5.96 -2.92 -0.02 2.58 16 9 C 0.01 0.55 5.45 84.66 0.46 1.01 16 10 N -0.93 -59.08 13.29 21.45 0.29 -58.80 16 11 Si 0.94 48.14 29.54 68.60 2.03 50.17 16 12 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 14 H -0.28 -14.12 7.11 99.48 0.71 -13.42 16 15 C 0.07 2.97 4.12 86.30 0.36 3.32 16 16 C -0.07 -2.64 1.86 -10.79 -0.02 -2.66 16 17 H 0.03 1.60 6.22 -2.39 -0.01 1.58 16 18 C -0.09 -2.77 5.09 30.60 0.16 -2.61 16 19 C -0.12 -3.10 5.92 30.59 0.18 -2.92 16 20 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 21 C -0.15 -3.61 5.54 30.58 0.17 -3.44 16 22 C 0.11 3.33 2.90 30.58 0.09 3.42 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 O -0.59 -20.06 12.56 -148.98 -1.87 -21.93 16 25 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.02 1.15 5.87 -2.39 -0.01 1.13 16 31 H 0.10 3.03 7.77 -2.39 -0.02 3.02 16 32 H 0.03 1.97 5.69 -2.39 -0.01 1.96 16 33 H -0.01 -0.50 6.11 -2.39 -0.01 -0.52 16 34 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.01 0.60 6.23 -2.38 -0.01 0.58 16 36 H 0.07 2.48 7.84 -2.39 -0.02 2.46 16 37 H 0.06 1.98 7.75 -2.39 -0.02 1.96 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.39 8.75 9.08 -74.06 -0.67 8.08 16 Total: -1.00 -74.79 342.71 0.14 -74.64 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.28 Total: 18.91 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 4.31 Total: -17.37 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -3.42 Total: -85.89 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -3.05 Total: -40.47 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -74.79 0.14 -74.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328150649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.889 kcal (2) G-P(sol) polarization free energy of solvation -74.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds