Wall clock time and date at job start Mon Mar 30 2020 06:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99985 * 2 1 4 4 C 1.52997 * 109.47055 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47355 * 68.06788 * 4 3 2 6 6 C 1.46901 * 111.00392 * 157.89314 * 5 4 3 7 7 C 1.50690 * 109.47310 * 288.15110 * 6 5 4 8 8 H 1.08001 * 120.00451 * 3.57880 * 7 6 5 9 9 C 1.37885 * 120.00194 * 183.57774 * 7 6 5 10 10 N 1.31512 * 120.00391 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99630 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47224 * 89.99965 * 11 9 7 13 13 H 1.48502 * 109.47026 * 209.99548 * 11 9 7 14 14 H 1.48493 * 109.47203 * 329.99410 * 11 9 7 15 15 C 1.46894 * 111.00265 * 281.85208 * 5 4 3 16 16 C 1.53006 * 109.47451 * 164.56816 * 15 5 4 17 17 H 1.09003 * 109.46648 * 54.99927 * 16 15 5 18 18 C 1.52995 * 109.47123 * 295.00124 * 16 15 5 19 19 C 1.52997 * 109.47134 * 179.97438 * 18 16 15 20 20 C 1.52994 * 109.47347 * 59.99796 * 19 18 16 21 21 C 1.53003 * 109.47374 * 300.00313 * 20 19 18 22 22 C 1.52997 * 109.46856 * 175.00038 * 16 15 5 23 23 H 1.08993 * 109.47678 * 60.00351 * 22 16 15 24 24 O 1.42902 * 109.47298 * 299.99711 * 22 16 15 25 25 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47056 * 299.99809 * 1 2 3 27 27 H 1.09004 * 109.47163 * 59.99920 * 1 2 3 28 28 H 1.09000 * 109.46918 * 59.99919 * 3 2 1 29 29 H 1.09004 * 109.47441 * 300.00078 * 3 2 1 30 30 H 1.09001 * 109.47038 * 308.06598 * 4 3 2 31 31 H 1.09005 * 109.46822 * 188.06928 * 4 3 2 32 32 H 1.09004 * 109.46529 * 48.14968 * 6 5 4 33 33 H 1.09000 * 109.47662 * 168.14601 * 6 5 4 34 34 H 0.97000 * 120.00310 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.47077 * 44.57162 * 15 5 4 36 36 H 1.09002 * 109.47260 * 284.56899 * 15 5 4 37 37 H 1.09000 * 109.47515 * 300.00167 * 18 16 15 38 38 H 1.09002 * 109.47189 * 59.99864 * 18 16 15 39 39 H 1.08999 * 109.47241 * 180.02562 * 19 18 16 40 40 H 1.09003 * 109.47276 * 299.99994 * 19 18 16 41 41 H 1.09003 * 109.47122 * 60.00304 * 20 19 18 42 42 H 1.09000 * 109.47549 * 180.02562 * 20 19 18 43 43 H 1.09002 * 109.47393 * 179.97438 * 21 20 19 44 44 H 1.09003 * 109.46989 * 300.00072 * 21 20 19 45 45 H 0.96698 * 113.99765 * 180.02562 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9822 0.6306 -1.2856 6 6 5.3869 0.9723 -1.5465 7 6 5.4944 2.4390 -1.8751 8 1 4.6173 3.0677 -1.8324 9 6 6.7126 2.9785 -2.2302 10 7 6.8064 4.2584 -2.5175 11 14 8.2296 1.8909 -2.3047 12 1 8.3640 1.3215 -3.6696 13 1 9.4340 2.6987 -1.9847 14 1 8.0970 0.7882 -1.3191 15 6 3.7767 -0.8232 -1.3321 16 6 3.8821 -1.3073 -2.7797 17 1 4.8360 -0.9895 -3.2005 18 6 2.7380 -0.7103 -3.6016 19 6 2.8436 -1.1939 -5.0493 20 6 2.7545 -2.7208 -5.0848 21 6 3.8986 -3.3178 -4.2629 22 6 3.7925 -2.8342 -2.8146 23 1 2.8386 -3.1520 -2.3938 24 8 4.8611 -3.3918 -2.0470 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8465 -0.8900 30 1 3.8479 0.5242 0.8082 31 1 3.9780 2.1703 0.1436 32 1 5.9844 0.7535 -0.6614 33 1 5.7540 0.3837 -2.3872 34 1 7.6633 4.6379 -2.7677 35 1 2.7884 -1.0632 -0.9398 36 1 4.5374 -1.3172 -0.7275 37 1 1.7840 -1.0280 -3.1807 38 1 2.8018 0.3775 -3.5767 39 1 2.0288 -0.7682 -5.6349 40 1 3.7976 -0.8758 -5.4699 41 1 1.8005 -3.0389 -4.6642 42 1 2.8302 -3.0654 -6.1161 43 1 3.8348 -4.4057 -4.2878 44 1 4.8526 -2.9997 -4.6834 45 1 4.8670 -4.3585 -2.0252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328150651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:01 Heat of formation + Delta-G solvation = -110.251329 kcal Electronic energy + Delta-G solvation = -22812.321868 eV Core-core repulsion = 19636.214375 eV Total energy + Delta-G solvation = -3176.107493 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -39.18453 -37.79749 -36.05927 -35.24864 -32.48190 -31.37073 -29.50255 -29.26744 -27.13922 -26.07733 -24.02027 -22.32505 -22.08023 -21.06824 -19.79335 -19.18666 -17.03615 -16.80956 -16.17992 -15.71114 -15.22161 -14.86113 -14.59301 -14.25461 -14.12134 -13.69542 -13.45216 -13.28164 -12.84757 -12.56613 -12.49527 -12.29074 -11.79145 -11.62533 -11.48847 -11.31198 -11.09888 -10.99250 -10.88109 -10.69751 -10.47026 -10.35893 -10.13859 -9.92184 -9.78976 -9.65854 -9.48659 -9.21909 -9.10221 -8.49106 -7.18601 -5.99607 -3.95360 3.34138 3.41315 3.47234 4.12375 4.40293 4.48872 4.71527 4.89504 5.00058 5.20230 5.34163 5.37679 5.41051 5.45023 5.49282 5.58962 5.70426 5.72034 5.74595 5.75934 5.79328 5.85271 5.94092 6.02509 6.16145 6.20920 6.27237 6.32260 6.39002 6.50343 6.59199 6.66669 6.69508 6.90395 6.95299 7.01452 7.13011 7.48246 7.73654 7.83964 8.08530 8.20642 8.75739 9.09420 9.64042 11.13557 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.007662 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.389422 B = 3653.547423 C = 4946.597689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.068 3.932 4 C 0.063 3.937 5 N -0.522 5.522 6 C 0.160 3.840 7 C -0.504 4.504 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.903 5.903 11 Si 0.871 3.129 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.055 3.945 16 C -0.072 4.072 17 H 0.076 0.924 18 C -0.098 4.098 19 C -0.125 4.125 20 C -0.114 4.114 21 C -0.150 4.150 22 C 0.110 3.890 23 H 0.050 0.950 24 O -0.563 6.563 25 H 0.076 0.924 26 H 0.034 0.966 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.099 0.901 32 H -0.015 1.015 33 H 0.026 0.974 34 H 0.262 0.738 35 H 0.088 0.912 36 H 0.026 0.974 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.171 -14.091 -0.022 17.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.008 4.008 4 C -0.065 4.065 5 N -0.245 5.245 6 C 0.034 3.966 7 C -0.542 4.542 8 H 0.098 0.902 9 C -0.133 4.133 10 N -0.542 5.542 11 Si 0.698 3.302 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.192 1.192 15 C -0.073 4.073 16 C -0.091 4.091 17 H 0.094 0.906 18 C -0.136 4.136 19 C -0.162 4.162 20 C -0.152 4.152 21 C -0.188 4.188 22 C 0.051 3.949 23 H 0.068 0.932 24 O -0.368 6.368 25 H 0.095 0.905 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.117 0.883 32 H 0.003 0.997 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -11.065 -13.253 -0.355 17.268 hybrid contribution 1.106 -1.238 0.358 1.699 sum -9.958 -14.491 0.004 17.583 Atomic orbital electron populations 1.22646 0.82561 1.01808 0.99526 1.87893 1.18460 1.28987 1.95207 1.22727 0.94594 0.83845 0.99659 1.22054 0.92025 1.01499 0.90948 1.61879 1.22986 1.09683 1.29996 1.20203 0.83987 0.97517 0.94911 1.21067 0.95956 0.91946 1.45246 0.90249 1.24880 0.98565 0.94789 0.95053 1.69895 1.25242 1.11687 1.47405 0.86919 0.83172 0.81069 0.78998 1.20239 1.21348 1.19179 1.22273 1.01485 0.88758 0.94764 1.21112 1.00323 0.90599 0.97066 0.90564 1.21398 0.96982 1.02431 0.92771 1.21624 1.01934 0.94594 0.98080 1.21471 0.98009 0.96468 0.99234 1.22270 1.00063 0.99598 0.96847 1.21901 0.88996 0.94821 0.89184 0.93169 1.86625 1.52190 1.24273 1.73672 0.90505 0.94786 0.94326 0.94015 0.92324 0.95396 0.88251 0.99728 0.95582 0.92811 0.89355 0.95589 0.92788 0.89432 0.92240 0.91888 0.92245 0.92357 0.92441 0.91240 0.78647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.39 -6.00 7.93 -35.23 -0.28 -6.28 16 3 C 0.07 1.11 6.25 37.16 0.23 1.34 16 4 C 0.06 1.23 5.35 -3.83 -0.02 1.21 16 5 N -0.52 -11.09 3.78 -236.08 -0.89 -11.98 16 6 C 0.16 3.99 3.62 -4.98 -0.02 3.98 16 7 C -0.50 -14.33 8.93 -34.44 -0.31 -14.64 16 8 H 0.08 2.43 7.86 -52.49 -0.41 2.01 16 9 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 10 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 11 Si 0.87 22.19 27.40 -169.99 -4.66 17.53 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 H -0.27 -6.71 6.65 56.52 0.38 -6.33 16 15 C 0.06 1.05 4.08 -3.82 -0.02 1.03 16 16 C -0.07 -1.24 1.94 -90.62 -0.18 -1.42 16 17 H 0.08 1.54 6.38 -51.93 -0.33 1.21 16 18 C -0.10 -1.54 5.09 -26.74 -0.14 -1.68 16 19 C -0.12 -1.68 5.92 -26.74 -0.16 -1.84 16 20 C -0.11 -1.31 5.92 -26.73 -0.16 -1.46 16 21 C -0.15 -1.82 5.55 -26.70 -0.15 -1.96 16 22 C 0.11 1.56 2.91 -26.70 -0.08 1.48 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 O -0.56 -8.29 12.56 -35.23 -0.44 -8.74 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.03 0.53 7.96 -51.93 -0.41 0.12 16 31 H 0.10 2.09 6.97 -51.93 -0.36 1.73 16 32 H -0.01 -0.39 7.36 -51.93 -0.38 -0.77 16 33 H 0.03 0.67 5.44 -51.93 -0.28 0.39 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.09 1.60 5.15 -51.93 -0.27 1.34 16 36 H 0.03 0.54 7.45 -51.93 -0.39 0.15 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.61 7.75 -51.93 -0.40 1.21 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.37 3.56 9.08 45.56 0.41 3.97 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -31.79 344.08 -7.77 -39.55 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.48 Total: 2.36 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 0.03 Total: -10.60 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.12 Total: -39.02 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.72 Total: -15.02 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.66 Total: 17.53 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.79 -7.77 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328150651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.697 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds