Wall clock time and date at job start Mon Mar 30 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99985 * 2 1 4 4 C 1.52997 * 109.47055 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47355 * 68.06788 * 4 3 2 6 6 C 1.46901 * 111.00392 * 157.89314 * 5 4 3 7 7 C 1.50690 * 109.47310 * 288.15110 * 6 5 4 8 8 H 1.08001 * 120.00451 * 3.57880 * 7 6 5 9 9 C 1.37885 * 120.00194 * 183.57774 * 7 6 5 10 10 N 1.31512 * 120.00391 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99630 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47224 * 89.99965 * 11 9 7 13 13 H 1.48502 * 109.47026 * 209.99548 * 11 9 7 14 14 H 1.48493 * 109.47203 * 329.99410 * 11 9 7 15 15 C 1.46894 * 111.00265 * 281.85208 * 5 4 3 16 16 C 1.53006 * 109.47451 * 164.56816 * 15 5 4 17 17 H 1.09003 * 109.46648 * 54.99927 * 16 15 5 18 18 C 1.52995 * 109.47123 * 295.00124 * 16 15 5 19 19 C 1.52997 * 109.47134 * 179.97438 * 18 16 15 20 20 C 1.52994 * 109.47347 * 59.99796 * 19 18 16 21 21 C 1.53003 * 109.47374 * 300.00313 * 20 19 18 22 22 C 1.52997 * 109.46856 * 175.00038 * 16 15 5 23 23 H 1.08993 * 109.47678 * 60.00351 * 22 16 15 24 24 O 1.42902 * 109.47298 * 299.99711 * 22 16 15 25 25 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47056 * 299.99809 * 1 2 3 27 27 H 1.09004 * 109.47163 * 59.99920 * 1 2 3 28 28 H 1.09000 * 109.46918 * 59.99919 * 3 2 1 29 29 H 1.09004 * 109.47441 * 300.00078 * 3 2 1 30 30 H 1.09001 * 109.47038 * 308.06598 * 4 3 2 31 31 H 1.09005 * 109.46822 * 188.06928 * 4 3 2 32 32 H 1.09004 * 109.46529 * 48.14968 * 6 5 4 33 33 H 1.09000 * 109.47662 * 168.14601 * 6 5 4 34 34 H 0.97000 * 120.00310 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.47077 * 44.57162 * 15 5 4 36 36 H 1.09002 * 109.47260 * 284.56899 * 15 5 4 37 37 H 1.09000 * 109.47515 * 300.00167 * 18 16 15 38 38 H 1.09002 * 109.47189 * 59.99864 * 18 16 15 39 39 H 1.08999 * 109.47241 * 180.02562 * 19 18 16 40 40 H 1.09003 * 109.47276 * 299.99994 * 19 18 16 41 41 H 1.09003 * 109.47122 * 60.00304 * 20 19 18 42 42 H 1.09000 * 109.47549 * 180.02562 * 20 19 18 43 43 H 1.09002 * 109.47393 * 179.97438 * 21 20 19 44 44 H 1.09003 * 109.46989 * 300.00072 * 21 20 19 45 45 H 0.96698 * 113.99765 * 180.02562 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9822 0.6306 -1.2856 6 6 5.3869 0.9723 -1.5465 7 6 5.4944 2.4390 -1.8751 8 1 4.6173 3.0677 -1.8324 9 6 6.7126 2.9785 -2.2302 10 7 6.8064 4.2584 -2.5175 11 14 8.2296 1.8909 -2.3047 12 1 8.3640 1.3215 -3.6696 13 1 9.4340 2.6987 -1.9847 14 1 8.0970 0.7882 -1.3191 15 6 3.7767 -0.8232 -1.3321 16 6 3.8821 -1.3073 -2.7797 17 1 4.8360 -0.9895 -3.2005 18 6 2.7380 -0.7103 -3.6016 19 6 2.8436 -1.1939 -5.0493 20 6 2.7545 -2.7208 -5.0848 21 6 3.8986 -3.3178 -4.2629 22 6 3.7925 -2.8342 -2.8146 23 1 2.8386 -3.1520 -2.3938 24 8 4.8611 -3.3918 -2.0470 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8465 -0.8900 30 1 3.8479 0.5242 0.8082 31 1 3.9780 2.1703 0.1436 32 1 5.9844 0.7535 -0.6614 33 1 5.7540 0.3837 -2.3872 34 1 7.6633 4.6379 -2.7677 35 1 2.7884 -1.0632 -0.9398 36 1 4.5374 -1.3172 -0.7275 37 1 1.7840 -1.0280 -3.1807 38 1 2.8018 0.3775 -3.5767 39 1 2.0288 -0.7682 -5.6349 40 1 3.7976 -0.8758 -5.4699 41 1 1.8005 -3.0389 -4.6642 42 1 2.8302 -3.0654 -6.1161 43 1 3.8348 -4.4057 -4.2878 44 1 4.8526 -2.9997 -4.6834 45 1 4.8670 -4.3585 -2.0252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328150651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:00 Heat of formation + Delta-G solvation = -133.589406 kcal Electronic energy + Delta-G solvation = -22813.333883 eV Core-core repulsion = 19636.214375 eV Total energy + Delta-G solvation = -3177.119508 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.44621 -39.05730 -37.55114 -36.37502 -34.67543 -32.67861 -31.09908 -30.49479 -28.85666 -27.13280 -25.49253 -23.92336 -23.46932 -22.36209 -21.18546 -20.60333 -19.00275 -18.13593 -17.43440 -17.11149 -16.56952 -16.26950 -16.08193 -15.76444 -15.41050 -15.03571 -14.78073 -14.69342 -14.34820 -14.14490 -13.94918 -13.69995 -13.37594 -12.95570 -12.86442 -12.68692 -12.56221 -12.41829 -12.27238 -12.09586 -12.05479 -11.89119 -11.57791 -11.43455 -11.34865 -11.21229 -10.92862 -10.76946 -10.57264 -10.39563 -8.94255 -8.29320 -6.29909 1.29788 1.30950 1.42677 2.31921 2.94724 3.03262 3.20047 3.40560 3.80113 3.90276 4.11164 4.21376 4.26370 4.33625 4.37300 4.45989 4.50916 4.55734 4.58740 4.63647 4.65623 4.70135 4.77850 4.83526 4.89568 4.91519 4.94288 5.05456 5.11049 5.13369 5.20712 5.25387 5.30927 5.36033 5.43172 5.57193 5.59733 5.65355 6.04131 6.32931 6.46977 6.70101 6.75440 7.00316 7.33364 8.87002 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.007662 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.389422 B = 3653.547423 C = 4946.597689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.082 3.918 4 C 0.060 3.940 5 N -0.528 5.528 6 C 0.175 3.825 7 C -0.505 4.505 8 H 0.045 0.955 9 C 0.015 3.985 10 N -0.943 5.943 11 Si 0.935 3.065 12 H -0.268 1.268 13 H -0.277 1.277 14 H -0.263 1.263 15 C 0.064 3.936 16 C -0.074 4.074 17 H 0.038 0.962 18 C -0.091 4.091 19 C -0.124 4.124 20 C -0.108 4.108 21 C -0.145 4.145 22 C 0.115 3.885 23 H 0.069 0.931 24 O -0.588 6.588 25 H 0.098 0.902 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.031 0.969 31 H 0.074 0.926 32 H -0.027 1.027 33 H 0.020 0.980 34 H 0.266 0.734 35 H 0.103 0.897 36 H 0.007 0.993 37 H 0.070 0.930 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.459 -16.890 -0.193 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.005 3.995 4 C -0.068 4.068 5 N -0.251 5.251 6 C 0.048 3.952 7 C -0.544 4.544 8 H 0.063 0.937 9 C -0.183 4.183 10 N -0.584 5.584 11 Si 0.759 3.241 12 H -0.193 1.193 13 H -0.202 1.202 14 H -0.187 1.187 15 C -0.064 4.064 16 C -0.093 4.093 17 H 0.056 0.944 18 C -0.128 4.128 19 C -0.161 4.161 20 C -0.146 4.146 21 C -0.183 4.183 22 C 0.056 3.944 23 H 0.087 0.913 24 O -0.396 6.396 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.092 0.908 32 H -0.009 1.009 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.025 0.975 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.068 0.932 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -12.374 -16.078 -0.520 20.295 hybrid contribution 1.401 -0.336 0.462 1.513 sum -10.973 -16.414 -0.058 19.744 Atomic orbital electron populations 1.22882 0.80093 1.03554 1.00465 1.87813 1.21003 1.28123 1.95375 1.22446 0.92103 0.84611 1.00350 1.22060 0.94624 0.99977 0.90128 1.61870 1.20377 1.11605 1.31286 1.19890 0.86300 0.95080 0.93941 1.21226 0.94930 0.93414 1.44817 0.93659 1.25675 1.01769 0.96063 0.94757 1.70019 1.26329 1.13445 1.48650 0.85897 0.79452 0.79341 0.79372 1.19345 1.20192 1.18698 1.22288 1.01430 0.86718 0.95963 1.21112 0.98955 0.93606 0.95639 0.94375 1.21273 0.97065 1.00069 0.94418 1.21610 1.01422 0.96811 0.96307 1.21454 0.98537 0.94157 1.00422 1.22236 0.99450 1.01473 0.95142 1.21821 0.89610 0.92209 0.90781 0.91314 1.86569 1.52533 1.26540 1.73923 0.88385 0.93299 0.93930 0.91558 0.93350 0.95115 0.90784 1.00901 0.96194 0.92457 0.87886 0.97489 0.91121 0.93118 0.90823 0.93927 0.90384 0.90522 0.89319 0.93158 0.76039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.40 -11.81 7.93 -148.98 -1.18 -12.99 16 3 C 0.08 2.61 6.25 71.98 0.45 3.06 16 4 C 0.06 2.41 5.35 86.30 0.46 2.87 16 5 N -0.53 -23.17 3.78 -900.81 -3.40 -26.58 16 6 C 0.18 9.06 3.62 85.55 0.31 9.37 16 7 C -0.51 -30.06 8.93 25.60 0.23 -29.83 16 8 H 0.05 2.94 7.86 -2.91 -0.02 2.91 16 9 C 0.01 0.90 5.47 84.66 0.46 1.36 16 10 N -0.94 -59.81 13.96 21.45 0.30 -59.51 16 11 Si 0.93 46.66 27.40 68.60 1.88 48.54 16 12 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 14 H -0.26 -12.82 6.65 99.48 0.66 -12.16 16 15 C 0.06 2.42 4.08 86.31 0.35 2.77 16 16 C -0.07 -2.55 1.94 -10.79 -0.02 -2.57 16 17 H 0.04 1.59 6.38 -2.39 -0.02 1.58 16 18 C -0.09 -2.81 5.09 30.59 0.16 -2.66 16 19 C -0.12 -3.19 5.92 30.59 0.18 -3.01 16 20 C -0.11 -2.11 5.92 30.59 0.18 -1.93 16 21 C -0.15 -3.11 5.55 30.61 0.17 -2.94 16 22 C 0.11 3.01 2.91 30.61 0.09 3.09 16 23 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 24 O -0.59 -16.29 12.56 -148.98 -1.87 -18.16 16 25 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.03 1.19 7.96 -2.39 -0.02 1.17 16 31 H 0.07 3.29 6.97 -2.38 -0.02 3.27 16 32 H -0.03 -1.43 7.36 -2.38 -0.02 -1.44 16 33 H 0.02 1.06 5.44 -2.39 -0.01 1.05 16 34 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.10 3.63 5.15 -2.38 -0.01 3.62 16 36 H 0.01 0.29 7.45 -2.39 -0.02 0.27 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 1.93 7.75 -2.39 -0.02 1.91 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.39 6.52 9.08 -74.06 -0.67 5.85 16 Total: -1.00 -71.24 344.08 0.22 -71.03 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.23 Total: 16.31 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.27 Total: -18.64 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -3.11 Total: -86.09 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -3.05 Total: -31.15 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.88 Total: 48.54 kcal Total: -71.24 0.22 -71.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328150651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.563 kcal (2) G-P(sol) polarization free energy of solvation -71.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds