Wall clock time and date at job start Mon Mar 30 2020 05:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.50296 * 54.92409 * 5 4 3 7 7 C 1.53113 * 109.50856 * 294.80183 * 5 4 3 8 8 C 1.53119 * 109.16779 * 182.40435 * 7 5 4 9 9 C 1.53042 * 109.27271 * 57.65157 * 8 7 5 10 10 N 1.46843 * 109.52814 * 300.82290 * 9 8 7 11 11 C 1.46892 * 111.00197 * 185.84340 * 10 9 8 12 12 C 1.52999 * 109.47493 * 65.78917 * 11 10 9 13 13 O 1.42896 * 109.46989 * 64.99780 * 12 11 10 14 14 C 1.42898 * 114.00088 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47308 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00037 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00494 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46902 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47238 * 119.99862 * 19 17 15 22 22 H 1.48496 * 109.47181 * 239.99826 * 19 17 15 23 23 C 1.46853 * 111.19621 * 61.74092 * 10 9 8 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 30 30 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 31 31 H 1.09000 * 109.52344 * 302.31403 * 7 5 4 32 32 H 1.09004 * 109.52210 * 62.49644 * 7 5 4 33 33 H 1.08998 * 109.49978 * 297.71559 * 8 7 5 34 34 H 1.08996 * 109.50739 * 177.59416 * 8 7 5 35 35 H 1.09004 * 109.45589 * 180.80418 * 9 8 7 36 36 H 1.09002 * 109.44949 * 60.83855 * 9 8 7 37 37 H 1.09000 * 109.47298 * 185.79146 * 11 10 9 38 38 H 1.09004 * 109.47062 * 305.78589 * 11 10 9 39 39 H 1.08999 * 109.47107 * 185.00457 * 12 11 10 40 40 H 1.09003 * 109.46790 * 305.00138 * 12 11 10 41 41 H 1.09000 * 109.47544 * 300.00773 * 14 13 12 42 42 H 1.09006 * 109.47033 * 60.00497 * 14 13 12 43 43 H 0.96998 * 120.00719 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.46006 * 178.23785 * 23 10 9 45 45 H 1.09001 * 109.45612 * 58.27764 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 1 3.3481 3.4428 0.8402 7 6 3.3726 3.5878 -1.3108 8 6 3.8238 5.0509 -1.3291 9 6 5.3440 5.1129 -1.1641 10 7 5.7263 4.4798 0.1045 11 6 7.1631 4.6430 0.3624 12 6 7.4774 6.1246 0.5794 13 8 6.8261 6.5807 1.7666 14 6 7.0564 7.9596 2.0628 15 6 6.3270 8.3302 3.3284 16 1 5.7460 7.5870 3.8542 17 6 6.4013 9.6181 3.8149 18 7 7.1084 10.5234 3.1744 19 14 5.4978 10.0774 5.3841 20 1 4.7797 8.8878 5.9080 21 1 6.4746 10.5523 6.3968 22 1 4.5204 11.1572 5.0945 23 6 5.3453 3.0618 0.1263 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8332 0.9769 0.8908 30 1 3.8340 0.9766 -0.8891 31 1 3.8190 3.0585 -2.1527 32 1 2.2861 3.5407 -1.3845 33 1 3.3466 5.5890 -0.5100 34 1 3.5418 5.5070 -2.2780 35 1 5.6669 6.1540 -1.1623 36 1 5.8206 4.5862 -1.9909 37 1 7.4388 4.0789 1.2534 38 1 7.7299 4.2727 -0.4919 39 1 8.5545 6.2563 0.6823 40 1 7.1209 6.7005 -0.2747 41 1 8.1248 8.1290 2.1967 42 1 6.6915 8.5739 1.2396 43 1 7.1604 11.4295 3.5165 44 1 5.6693 2.6131 1.0653 45 1 5.8221 2.5449 -0.7065 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338999484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:28 Heat of formation + Delta-G solvation = -108.505248 kcal Electronic energy + Delta-G solvation = -21271.020748 eV Core-core repulsion = 18094.988971 eV Total energy + Delta-G solvation = -3176.031777 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.39073 -37.95004 -36.48204 -33.97091 -32.57963 -31.99374 -30.79069 -28.89566 -26.70604 -25.81913 -23.76269 -22.95599 -22.33321 -22.19878 -20.49755 -19.62278 -16.84589 -16.35482 -16.28075 -16.11485 -15.55870 -14.91320 -14.76474 -14.34156 -14.24633 -14.01768 -13.98264 -13.51225 -13.06081 -12.86914 -12.63221 -12.61004 -12.07845 -11.93280 -11.62403 -11.61291 -11.49209 -11.14220 -10.93035 -10.74461 -10.72236 -10.61336 -10.54797 -10.22341 -10.14021 -9.85986 -9.73938 -8.99788 -8.72730 -8.07907 -7.99015 -6.04230 -4.04756 3.34033 3.40255 3.40394 3.47744 4.12290 4.41702 4.69660 4.78841 4.78966 4.91079 4.93577 5.02932 5.09835 5.21762 5.27782 5.30270 5.32371 5.41823 5.45150 5.48986 5.56194 5.63887 5.65306 5.67925 5.79674 5.85288 5.86263 5.94571 6.06459 6.13118 6.16685 6.24692 6.34371 6.38804 6.52151 7.04394 7.18032 7.33580 7.35101 7.51448 7.88346 8.24618 8.70103 9.10785 9.60012 11.07575 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019260 B = 0.003481 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.439541 B = 8042.555418 C = 8886.679445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.385 6.385 4 C 0.070 3.930 5 C -0.084 4.084 6 H 0.091 0.909 7 C -0.108 4.108 8 C -0.118 4.118 9 C 0.054 3.946 10 N -0.522 5.522 11 C 0.063 3.937 12 C 0.066 3.934 13 O -0.379 6.379 14 C 0.194 3.806 15 C -0.508 4.508 16 H 0.067 0.933 17 C 0.054 3.946 18 N -0.901 5.901 19 Si 0.906 3.094 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.067 3.933 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.025 0.975 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.001 0.999 42 H 0.003 0.997 43 H 0.262 0.738 44 H 0.075 0.925 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.910 -19.917 -10.774 23.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.304 6.304 4 C -0.007 4.007 5 C -0.103 4.103 6 H 0.110 0.890 7 C -0.146 4.146 8 C -0.156 4.156 9 C -0.074 4.074 10 N -0.246 5.246 11 C -0.065 4.065 12 C -0.012 4.012 13 O -0.298 6.298 14 C 0.119 3.881 15 C -0.546 4.546 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.541 5.541 19 Si 0.734 3.266 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.062 4.062 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.043 0.957 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.344 -19.447 -10.266 23.184 hybrid contribution 0.497 -0.071 -0.069 0.506 sum -6.847 -19.518 -10.335 23.122 Atomic orbital electron populations 1.21740 0.93829 1.02055 1.03247 1.22431 0.95576 0.84134 0.99824 1.87904 1.21207 1.25957 1.95366 1.22484 0.81124 0.97280 0.99811 1.21149 0.95478 0.93523 1.00122 0.89033 1.21544 1.01194 0.95692 0.96142 1.21588 0.95352 0.96548 1.02067 1.22153 0.95992 1.00120 0.89119 1.61696 1.16586 1.12953 1.33380 1.22118 0.87104 0.97221 1.00053 1.22266 0.95521 0.93191 0.90231 1.87951 1.72169 1.29425 1.40278 1.20173 0.95478 0.76525 0.95887 1.21111 1.30073 0.95549 1.07883 0.91464 1.24951 0.95764 0.95997 0.97937 1.69975 1.40916 1.03421 1.39772 0.86301 0.79354 0.78476 0.82494 1.19439 1.20946 1.20900 1.21953 0.94373 0.89287 1.00550 0.91295 0.91742 0.91882 0.93703 0.93541 0.93277 0.93689 0.92924 0.91276 0.90513 0.91785 0.90134 0.95709 0.90134 0.94530 0.94381 0.94554 0.98079 0.97963 0.92833 0.90688 0.95488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.49 6.66 37.16 0.25 0.73 16 3 O -0.38 -4.43 9.94 -35.23 -0.35 -4.78 16 4 C 0.07 0.73 5.32 37.16 0.20 0.93 16 5 C -0.08 -1.03 2.59 -90.54 -0.23 -1.26 16 6 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 7 C -0.11 -1.27 5.15 -26.61 -0.14 -1.41 16 8 C -0.12 -1.53 6.09 -26.65 -0.16 -1.70 16 9 C 0.05 0.76 5.30 -3.83 -0.02 0.74 16 10 N -0.52 -8.12 4.60 -234.67 -1.08 -9.20 16 11 C 0.06 0.97 5.34 -3.83 -0.02 0.95 16 12 C 0.07 1.26 6.00 37.16 0.22 1.48 16 13 O -0.38 -9.45 10.27 -35.23 -0.36 -9.81 16 14 C 0.19 5.47 5.69 36.00 0.20 5.68 16 15 C -0.51 -15.37 9.43 -34.44 -0.32 -15.70 16 16 H 0.07 2.04 7.81 -52.48 -0.41 1.63 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 19 Si 0.91 22.36 29.54 -169.99 -5.02 17.34 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.07 0.84 4.74 -3.83 -0.02 0.82 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.82 7.90 -51.93 -0.41 0.41 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.26 6.12 -51.93 -0.32 0.94 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 1.24 7.99 -51.93 -0.41 0.83 16 38 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.68 6.22 -51.93 -0.32 0.36 16 41 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 42 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.07 0.92 8.01 -51.93 -0.42 0.51 16 45 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 357.79 15.07 5.39 5.39 Total: -1.00 -32.54 357.79 -9.06 -41.60 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -8.61 Total: -5.80 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 0.24 Total: -7.96 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.34 Total: -35.99 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.71 Total: -14.59 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.54 -9.06 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338999484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.903 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds