Wall clock time and date at job start Mon Mar 30 2020 05:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.42899 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46889 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.50296 * 54.92409 * 5 4 3 7 7 C 1.53113 * 109.50856 * 294.80183 * 5 4 3 8 8 C 1.53119 * 109.16779 * 182.40435 * 7 5 4 9 9 C 1.53042 * 109.27271 * 57.65157 * 8 7 5 10 10 N 1.46843 * 109.52814 * 300.82290 * 9 8 7 11 11 C 1.46892 * 111.00197 * 185.84340 * 10 9 8 12 12 C 1.52999 * 109.47493 * 65.78917 * 11 10 9 13 13 O 1.42896 * 109.46989 * 64.99780 * 12 11 10 14 14 C 1.42898 * 114.00088 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47308 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00037 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00494 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46902 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47238 * 119.99862 * 19 17 15 22 22 H 1.48496 * 109.47181 * 239.99826 * 19 17 15 23 23 C 1.46853 * 111.19621 * 61.74092 * 10 9 8 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.08997 * 109.47171 * 299.99768 * 4 3 2 30 30 H 1.08997 * 109.47442 * 59.99964 * 4 3 2 31 31 H 1.09000 * 109.52344 * 302.31403 * 7 5 4 32 32 H 1.09004 * 109.52210 * 62.49644 * 7 5 4 33 33 H 1.08998 * 109.49978 * 297.71559 * 8 7 5 34 34 H 1.08996 * 109.50739 * 177.59416 * 8 7 5 35 35 H 1.09004 * 109.45589 * 180.80418 * 9 8 7 36 36 H 1.09002 * 109.44949 * 60.83855 * 9 8 7 37 37 H 1.09000 * 109.47298 * 185.79146 * 11 10 9 38 38 H 1.09004 * 109.47062 * 305.78589 * 11 10 9 39 39 H 1.08999 * 109.47107 * 185.00457 * 12 11 10 40 40 H 1.09003 * 109.46790 * 305.00138 * 12 11 10 41 41 H 1.09000 * 109.47544 * 300.00773 * 14 13 12 42 42 H 1.09006 * 109.47033 * 60.00497 * 14 13 12 43 43 H 0.96998 * 120.00719 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.46006 * 178.23785 * 23 10 9 45 45 H 1.09001 * 109.45612 * 58.27764 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 -0.0001 6 1 3.3481 3.4428 0.8402 7 6 3.3726 3.5878 -1.3108 8 6 3.8238 5.0509 -1.3291 9 6 5.3440 5.1129 -1.1641 10 7 5.7263 4.4798 0.1045 11 6 7.1631 4.6430 0.3624 12 6 7.4774 6.1246 0.5794 13 8 6.8261 6.5807 1.7666 14 6 7.0564 7.9596 2.0628 15 6 6.3270 8.3302 3.3284 16 1 5.7460 7.5870 3.8542 17 6 6.4013 9.6181 3.8149 18 7 7.1084 10.5234 3.1744 19 14 5.4978 10.0774 5.3841 20 1 4.7797 8.8878 5.9080 21 1 6.4746 10.5523 6.3968 22 1 4.5204 11.1572 5.0945 23 6 5.3453 3.0618 0.1263 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8332 0.9769 0.8908 30 1 3.8340 0.9766 -0.8891 31 1 3.8190 3.0585 -2.1527 32 1 2.2861 3.5407 -1.3845 33 1 3.3466 5.5890 -0.5100 34 1 3.5418 5.5070 -2.2780 35 1 5.6669 6.1540 -1.1623 36 1 5.8206 4.5862 -1.9909 37 1 7.4388 4.0789 1.2534 38 1 7.7299 4.2727 -0.4919 39 1 8.5545 6.2563 0.6823 40 1 7.1209 6.7005 -0.2747 41 1 8.1248 8.1290 2.1967 42 1 6.6915 8.5739 1.2396 43 1 7.1604 11.4295 3.5165 44 1 5.6693 2.6131 1.0653 45 1 5.8221 2.5449 -0.7065 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338999484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:27 Heat of formation + Delta-G solvation = -130.273825 kcal Electronic energy + Delta-G solvation = -21271.964704 eV Core-core repulsion = 18094.988971 eV Total energy + Delta-G solvation = -3176.975734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43420 -38.93786 -38.17624 -35.30283 -34.63982 -32.92167 -31.59995 -30.46362 -28.72256 -26.74254 -24.97070 -24.41454 -23.65265 -23.36327 -21.72692 -20.63327 -18.60994 -17.67547 -17.43480 -17.32603 -16.99510 -16.47034 -16.02103 -15.77837 -15.58761 -15.24815 -15.03181 -14.70302 -14.62346 -13.84589 -13.66165 -13.58304 -13.53560 -13.28638 -12.96868 -12.78564 -12.72646 -12.50216 -12.33873 -12.30766 -12.15672 -11.90220 -11.88357 -11.54812 -11.28112 -11.20261 -11.12484 -10.84017 -10.49262 -10.15731 -9.11720 -8.31533 -6.43233 1.39405 1.41177 1.56225 2.35656 2.59389 3.01923 3.08226 3.28281 3.76762 3.87164 3.96143 4.14935 4.18866 4.20112 4.30233 4.37375 4.41778 4.44164 4.49305 4.52208 4.54464 4.58309 4.62512 4.67724 4.80873 4.81650 4.86699 4.90138 4.99686 5.01126 5.04321 5.11481 5.19499 5.20660 5.28597 5.37193 5.48441 5.56582 5.98510 6.18619 6.23662 6.35945 6.58388 6.88074 7.29155 8.81157 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019260 B = 0.003481 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.439541 B = 8042.555418 C = 8886.679445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.410 6.410 4 C 0.075 3.925 5 C -0.082 4.082 6 H 0.058 0.942 7 C -0.100 4.100 8 C -0.116 4.116 9 C 0.056 3.944 10 N -0.554 5.554 11 C 0.072 3.928 12 C 0.055 3.945 13 O -0.395 6.395 14 C 0.210 3.790 15 C -0.544 4.544 16 H 0.058 0.942 17 C 0.005 3.995 18 N -0.932 5.932 19 Si 0.983 3.017 20 H -0.266 1.266 21 H -0.269 1.269 22 H -0.271 1.271 23 C 0.070 3.930 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.038 0.962 41 H -0.016 1.016 42 H -0.020 1.020 43 H 0.270 0.730 44 H 0.075 0.925 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.259 -21.530 -11.064 25.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.331 6.331 4 C -0.002 4.002 5 C -0.101 4.101 6 H 0.077 0.923 7 C -0.137 4.137 8 C -0.154 4.154 9 C -0.072 4.072 10 N -0.280 5.280 11 C -0.056 4.056 12 C -0.022 4.022 13 O -0.315 6.315 14 C 0.135 3.865 15 C -0.582 4.582 16 H 0.077 0.923 17 C -0.193 4.193 18 N -0.571 5.571 19 Si 0.806 3.194 20 H -0.190 1.190 21 H -0.194 1.194 22 H -0.196 1.196 23 C -0.057 4.057 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.002 0.998 42 H -0.002 1.002 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.686 -21.082 -10.576 24.807 hybrid contribution 0.622 0.405 -0.052 0.744 sum -7.064 -20.677 -10.628 24.298 Atomic orbital electron populations 1.21768 0.93257 1.03270 1.02493 1.22639 0.96134 0.82989 1.00848 1.87875 1.21710 1.27895 1.95574 1.22430 0.80980 0.95793 1.01021 1.21086 0.95141 0.94809 0.99083 0.92321 1.21473 1.01027 0.94671 0.96560 1.21570 0.94615 0.97503 1.01710 1.22118 0.96612 0.99025 0.89440 1.61624 1.16648 1.15128 1.34551 1.22026 0.87918 0.94154 1.01477 1.22640 0.95712 0.95802 0.88040 1.87905 1.73177 1.27324 1.43049 1.19775 0.93930 0.78133 0.94697 1.21404 1.31295 0.96331 1.09123 0.92339 1.25964 0.96214 0.95471 1.01657 1.70074 1.41541 1.04037 1.41474 0.85141 0.78256 0.78339 0.77693 1.18996 1.19435 1.19625 1.21955 0.94554 0.87673 1.01544 0.89107 0.92792 0.92325 0.92257 0.92842 0.92647 0.91767 0.90985 0.91655 0.93573 0.90097 0.92441 0.93369 0.90134 0.91039 0.93447 0.94436 0.99810 1.00180 0.92066 0.90625 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.28 71.98 0.74 -1.28 16 2 C 0.05 0.77 6.66 71.98 0.48 1.25 16 3 O -0.41 -8.96 9.94 -148.98 -1.48 -10.44 16 4 C 0.07 1.42 5.32 71.98 0.38 1.80 16 5 C -0.08 -1.94 2.59 -10.74 -0.03 -1.97 16 6 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 7 C -0.10 -2.22 5.15 30.67 0.16 -2.06 16 8 C -0.12 -3.00 6.09 30.65 0.19 -2.81 16 9 C 0.06 1.53 5.30 86.33 0.46 1.99 16 10 N -0.55 -16.87 4.60 -896.36 -4.13 -21.00 16 11 C 0.07 2.13 5.34 86.30 0.46 2.60 16 12 C 0.06 2.13 6.00 71.98 0.43 2.56 16 13 O -0.39 -20.32 10.27 -148.98 -1.53 -21.85 16 14 C 0.21 12.33 5.69 71.24 0.41 12.73 16 15 C -0.54 -33.79 9.43 25.60 0.24 -33.55 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 17 C 0.01 0.30 5.46 84.65 0.46 0.76 16 18 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 19 Si 0.98 45.88 29.54 68.60 2.03 47.90 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.07 1.66 4.74 86.32 0.41 2.07 16 24 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.51 7.90 -2.38 -0.02 1.49 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.82 6.12 -2.38 -0.01 1.81 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 2.39 7.99 -2.39 -0.02 2.37 16 38 H 0.07 1.65 8.12 -2.38 -0.02 1.63 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.04 1.43 6.22 -2.39 -0.01 1.42 16 41 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 42 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 16 43 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.08 1.75 8.01 -2.39 -0.02 1.74 16 45 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -71.21 357.79 0.87 -70.34 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.91 Total: 8.16 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 4.79 Total: -15.91 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -3.84 Total: -78.19 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -3.01 Total: -32.30 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -71.21 0.87 -70.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338999484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.937 kcal (2) G-P(sol) polarization free energy of solvation -71.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds