Wall clock time and date at job start Mon Mar 30 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46908 * 110.99974 * 2 1 4 4 C 1.52995 * 109.46610 * 66.04385 * 3 2 1 5 5 O 1.42899 * 109.47256 * 65.00268 * 4 3 2 6 6 C 1.42901 * 114.00406 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47532 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99490 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99835 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00227 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99576 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47156 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47226 * 59.99888 * 11 9 7 14 14 H 1.48495 * 109.47512 * 299.99865 * 11 9 7 15 15 C 1.46905 * 110.99930 * 236.04833 * 2 1 3 16 16 C 1.53002 * 109.46604 * 199.84532 * 15 2 1 17 17 H 1.08995 * 109.47240 * 305.11957 * 16 15 2 18 18 C 1.52996 * 109.47483 * 65.12432 * 16 15 2 19 19 C 1.52995 * 109.47427 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47255 * 300.00036 * 19 18 16 21 21 C 1.53005 * 109.46859 * 60.00079 * 20 19 18 22 22 C 1.53001 * 109.46666 * 185.12599 * 16 15 2 23 23 H 1.08999 * 109.47237 * 299.99709 * 22 16 15 24 24 O 1.42894 * 109.47625 * 59.99839 * 22 16 15 25 25 H 1.09011 * 109.47051 * 54.72962 * 1 2 3 26 26 H 1.09003 * 109.46982 * 174.72259 * 1 2 3 27 27 H 1.09000 * 109.47468 * 294.73010 * 1 2 3 28 28 H 1.09001 * 109.46968 * 306.04698 * 3 2 1 29 29 H 1.08994 * 109.47102 * 186.04376 * 3 2 1 30 30 H 1.08996 * 109.47662 * 304.99770 * 4 3 2 31 31 H 1.09007 * 109.47023 * 184.99680 * 4 3 2 32 32 H 1.09002 * 109.46849 * 59.99565 * 6 5 4 33 33 H 1.09005 * 109.47297 * 300.00228 * 6 5 4 34 34 H 0.96995 * 120.00202 * 0.02562 * 10 9 7 35 35 H 1.08997 * 109.46893 * 319.84524 * 15 2 1 36 36 H 1.08999 * 109.46824 * 79.84784 * 15 2 1 37 37 H 1.09004 * 109.46828 * 300.00242 * 18 16 15 38 38 H 1.09007 * 109.46847 * 59.99590 * 18 16 15 39 39 H 1.09007 * 109.47045 * 60.00197 * 19 18 16 40 40 H 1.08997 * 109.47215 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.46921 * 179.97438 * 20 19 18 42 42 H 1.08990 * 109.47057 * 300.00148 * 20 19 18 43 43 H 1.08999 * 109.47364 * 59.99618 * 21 20 19 44 44 H 1.09003 * 109.46787 * 180.02562 * 21 20 19 45 45 H 0.96696 * 114.00250 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0574 1.3182 5 8 2.2955 1.3975 2.3979 6 6 2.0221 1.9633 3.6813 7 6 2.7703 1.1940 4.7392 8 1 3.3920 0.3565 4.4595 9 6 2.6602 1.5588 6.0643 10 7 1.9026 2.5784 6.4049 11 14 3.5871 0.6047 7.3757 12 1 3.3030 1.1927 8.7095 13 1 5.0451 0.6777 7.1034 14 1 3.1505 -0.8145 7.3569 15 6 1.9954 -0.7660 -1.1377 16 6 3.4449 -1.1665 -0.8557 17 1 4.0288 -0.2764 -0.6213 18 6 3.4860 -2.1305 0.3316 19 6 4.9353 -2.5315 0.6132 20 6 5.5238 -3.2176 -0.6213 21 6 5.4828 -2.2534 -1.8086 22 6 4.0338 -1.8522 -2.0901 23 1 3.4500 -2.7423 -2.3245 24 8 3.9955 -0.9519 -3.1990 25 1 -0.3634 0.5935 -0.8391 26 1 -0.3633 -1.0233 -0.0945 27 1 -0.3634 0.4299 0.9334 28 1 1.5611 1.9274 -0.8309 29 1 3.0797 1.3445 -0.1082 30 1 0.5531 2.0058 1.4691 31 1 1.9438 3.1011 1.2832 32 1 0.9519 1.9101 3.8813 33 1 2.3428 3.0051 3.6950 34 1 1.4210 3.0736 5.7240 35 1 1.3923 -1.6623 -1.2824 36 1 1.9565 -0.1525 -2.0378 37 1 3.0663 -1.6419 1.2110 38 1 2.9020 -3.0207 0.0972 39 1 5.5196 -1.6416 0.8475 40 1 4.9646 -3.2180 1.4594 41 1 6.5565 -3.5028 -0.4208 42 1 4.9396 -4.1074 -0.8555 43 1 6.0670 -1.3635 -1.5744 44 1 5.9016 -2.7423 -2.6883 45 1 4.3544 -1.3207 -4.0177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339078418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:38 Heat of formation + Delta-G solvation = -120.561748 kcal Electronic energy + Delta-G solvation = -22075.998529 eV Core-core repulsion = 18899.443942 eV Total energy + Delta-G solvation = -3176.554586 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.49899 -37.60523 -36.06219 -35.49197 -32.92810 -31.65643 -29.62732 -29.18344 -26.55428 -26.18710 -23.78608 -22.53309 -22.38675 -21.43708 -20.30151 -19.66070 -17.31872 -16.91180 -15.94084 -15.79557 -15.34505 -15.06079 -14.38834 -14.24445 -13.97691 -13.81731 -13.67130 -13.49603 -12.93475 -12.85983 -12.77279 -12.21853 -11.87565 -11.77632 -11.63223 -11.57558 -11.39400 -11.21007 -10.94824 -10.77596 -10.63610 -10.55433 -10.27360 -10.08474 -10.06475 -10.02713 -9.74943 -8.73913 -8.55818 -8.15023 -7.97815 -6.39778 -4.07218 3.46678 3.49738 3.68325 4.02359 4.13704 4.50078 4.61460 4.70823 4.85198 4.97930 5.04057 5.22675 5.29119 5.34694 5.38091 5.42652 5.47517 5.53465 5.55123 5.62221 5.67244 5.76043 5.80812 5.87710 5.93508 6.00852 6.03562 6.05669 6.17832 6.18144 6.24932 6.33151 6.34713 6.57622 6.71972 6.85067 7.21644 7.31003 7.33294 7.52187 8.00301 8.27701 8.73478 8.90464 9.63310 11.00527 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017602 B = 0.004753 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.361278 B = 5889.752333 C = 7034.510224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.527 5.527 3 C 0.062 3.938 4 C 0.064 3.936 5 O -0.369 6.369 6 C 0.185 3.815 7 C -0.590 4.590 8 H 0.060 0.940 9 C 0.016 3.984 10 N -0.914 5.914 11 Si 1.078 2.922 12 H -0.282 1.282 13 H -0.286 1.286 14 H -0.286 1.286 15 C 0.064 3.936 16 C -0.070 4.070 17 H 0.078 0.922 18 C -0.105 4.105 19 C -0.124 4.124 20 C -0.116 4.116 21 C -0.149 4.149 22 C 0.109 3.891 23 H 0.051 0.949 24 O -0.567 6.567 25 H 0.018 0.982 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.036 0.964 32 H -0.008 1.008 33 H -0.009 1.009 34 H 0.266 0.734 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 -9.783 -19.093 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.250 5.250 3 C -0.066 4.066 4 C -0.014 4.014 5 O -0.288 6.288 6 C 0.110 3.890 7 C -0.628 4.628 8 H 0.079 0.921 9 C -0.187 4.187 10 N -0.550 5.550 11 Si 0.905 3.095 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.064 4.064 16 C -0.089 4.089 17 H 0.097 0.903 18 C -0.143 4.143 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.187 4.187 22 C 0.050 3.950 23 H 0.069 0.931 24 O -0.372 6.372 25 H 0.037 0.963 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.010 0.990 33 H 0.008 0.992 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.153 -9.860 -16.590 19.555 hybrid contribution -0.540 0.427 -2.874 2.956 sum 2.613 -9.433 -19.464 21.787 Atomic orbital electron populations 1.22408 0.87788 1.01242 1.00789 1.61826 1.07162 1.13689 1.42354 1.22166 1.01029 0.88089 0.95304 1.22303 0.96094 0.94571 0.88431 1.87971 1.69454 1.56473 1.14926 1.20250 0.94919 0.93321 0.80468 1.21888 1.31081 1.17527 0.92300 0.92144 1.25902 0.97208 0.97166 0.98440 1.70792 1.28045 1.18832 1.37378 0.83422 0.75543 0.75201 0.75318 1.20727 1.21273 1.21226 1.22072 0.95285 0.97493 0.91544 1.21096 0.95699 0.99330 0.92795 0.90341 1.21478 0.95803 0.98048 0.98928 1.21591 0.96934 1.00652 0.96967 1.21499 1.00853 0.97978 0.95056 1.22234 0.97471 1.00308 0.98671 1.21884 0.94845 0.91561 0.86733 0.93073 1.86551 1.86100 1.43737 1.20832 0.96346 0.91802 0.90978 0.94456 0.90123 0.94622 0.94567 0.99040 0.99162 0.92381 0.91619 0.94204 0.88746 0.92839 0.91675 0.91776 0.92057 0.92193 0.91122 0.92236 0.78174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.24 60.06 0.55 0.92 16 2 N -0.53 -8.27 4.10 -242.91 -1.00 -9.27 16 3 C 0.06 1.01 5.17 -3.82 -0.02 0.99 16 4 C 0.06 1.25 5.99 37.16 0.22 1.47 16 5 O -0.37 -9.23 10.27 -35.23 -0.36 -9.59 16 6 C 0.19 5.20 5.00 36.00 0.18 5.38 16 7 C -0.59 -17.91 9.43 -34.44 -0.32 -18.24 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 10 N -0.91 -28.57 13.65 55.43 0.76 -27.81 16 11 Si 1.08 25.95 29.90 -169.99 -5.08 20.86 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.06 0.86 4.32 -3.82 -0.02 0.84 16 16 C -0.07 -0.92 1.99 -90.62 -0.18 -1.10 16 17 H 0.08 1.20 6.67 -51.93 -0.35 0.86 16 18 C -0.11 -1.43 5.09 -26.74 -0.14 -1.57 16 19 C -0.12 -1.53 5.92 -26.73 -0.16 -1.69 16 20 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 21 C -0.15 -1.43 5.54 -26.75 -0.15 -1.58 16 22 C 0.11 1.15 2.90 -26.75 -0.08 1.08 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 O -0.57 -5.99 12.56 -35.23 -0.44 -6.44 16 25 H 0.02 0.23 8.07 -51.92 -0.42 -0.19 16 26 H 0.06 0.80 7.85 -51.93 -0.41 0.39 16 27 H 0.07 1.11 6.62 -51.93 -0.34 0.77 16 28 H 0.04 0.54 8.07 -51.93 -0.42 0.12 16 29 H 0.08 1.36 6.57 -51.93 -0.34 1.02 16 30 H 0.04 0.67 6.45 -51.93 -0.33 0.34 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H -0.01 -0.23 8.01 -51.93 -0.42 -0.65 16 33 H -0.01 -0.26 8.01 -51.93 -0.42 -0.68 16 34 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 35 H 0.07 0.81 7.74 -51.93 -0.40 0.41 16 36 H 0.04 0.55 7.39 -51.93 -0.38 0.16 16 37 H 0.09 1.63 7.76 -51.93 -0.40 1.23 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.37 2.29 9.08 45.56 0.41 2.70 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -33.36 350.37 -8.73 -42.09 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.52 Total: -0.68 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.36 Total: -14.44 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.24 Total: -37.08 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.80 Total: -16.03 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.86 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.36 -8.73 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339078418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.475 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds