Wall clock time and date at job start Mon Mar 30 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46908 * 110.99974 * 2 1 4 4 C 1.52995 * 109.46610 * 66.04385 * 3 2 1 5 5 O 1.42899 * 109.47256 * 65.00268 * 4 3 2 6 6 C 1.42901 * 114.00406 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47532 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99490 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99835 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00227 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99576 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47156 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47226 * 59.99888 * 11 9 7 14 14 H 1.48495 * 109.47512 * 299.99865 * 11 9 7 15 15 C 1.46905 * 110.99930 * 236.04833 * 2 1 3 16 16 C 1.53002 * 109.46604 * 199.84532 * 15 2 1 17 17 H 1.08995 * 109.47240 * 305.11957 * 16 15 2 18 18 C 1.52996 * 109.47483 * 65.12432 * 16 15 2 19 19 C 1.52995 * 109.47427 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47255 * 300.00036 * 19 18 16 21 21 C 1.53005 * 109.46859 * 60.00079 * 20 19 18 22 22 C 1.53001 * 109.46666 * 185.12599 * 16 15 2 23 23 H 1.08999 * 109.47237 * 299.99709 * 22 16 15 24 24 O 1.42894 * 109.47625 * 59.99839 * 22 16 15 25 25 H 1.09011 * 109.47051 * 54.72962 * 1 2 3 26 26 H 1.09003 * 109.46982 * 174.72259 * 1 2 3 27 27 H 1.09000 * 109.47468 * 294.73010 * 1 2 3 28 28 H 1.09001 * 109.46968 * 306.04698 * 3 2 1 29 29 H 1.08994 * 109.47102 * 186.04376 * 3 2 1 30 30 H 1.08996 * 109.47662 * 304.99770 * 4 3 2 31 31 H 1.09007 * 109.47023 * 184.99680 * 4 3 2 32 32 H 1.09002 * 109.46849 * 59.99565 * 6 5 4 33 33 H 1.09005 * 109.47297 * 300.00228 * 6 5 4 34 34 H 0.96995 * 120.00202 * 0.02562 * 10 9 7 35 35 H 1.08997 * 109.46893 * 319.84524 * 15 2 1 36 36 H 1.08999 * 109.46824 * 79.84784 * 15 2 1 37 37 H 1.09004 * 109.46828 * 300.00242 * 18 16 15 38 38 H 1.09007 * 109.46847 * 59.99590 * 18 16 15 39 39 H 1.09007 * 109.47045 * 60.00197 * 19 18 16 40 40 H 1.08997 * 109.47215 * 179.97438 * 19 18 16 41 41 H 1.09005 * 109.46921 * 179.97438 * 20 19 18 42 42 H 1.08990 * 109.47057 * 300.00148 * 20 19 18 43 43 H 1.08999 * 109.47364 * 59.99618 * 21 20 19 44 44 H 1.09003 * 109.46787 * 180.02562 * 21 20 19 45 45 H 0.96696 * 114.00250 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0574 1.3182 5 8 2.2955 1.3975 2.3979 6 6 2.0221 1.9633 3.6813 7 6 2.7703 1.1940 4.7392 8 1 3.3920 0.3565 4.4595 9 6 2.6602 1.5588 6.0643 10 7 1.9026 2.5784 6.4049 11 14 3.5871 0.6047 7.3757 12 1 3.3030 1.1927 8.7095 13 1 5.0451 0.6777 7.1034 14 1 3.1505 -0.8145 7.3569 15 6 1.9954 -0.7660 -1.1377 16 6 3.4449 -1.1665 -0.8557 17 1 4.0288 -0.2764 -0.6213 18 6 3.4860 -2.1305 0.3316 19 6 4.9353 -2.5315 0.6132 20 6 5.5238 -3.2176 -0.6213 21 6 5.4828 -2.2534 -1.8086 22 6 4.0338 -1.8522 -2.0901 23 1 3.4500 -2.7423 -2.3245 24 8 3.9955 -0.9519 -3.1990 25 1 -0.3634 0.5935 -0.8391 26 1 -0.3633 -1.0233 -0.0945 27 1 -0.3634 0.4299 0.9334 28 1 1.5611 1.9274 -0.8309 29 1 3.0797 1.3445 -0.1082 30 1 0.5531 2.0058 1.4691 31 1 1.9438 3.1011 1.2832 32 1 0.9519 1.9101 3.8813 33 1 2.3428 3.0051 3.6950 34 1 1.4210 3.0736 5.7240 35 1 1.3923 -1.6623 -1.2824 36 1 1.9565 -0.1525 -2.0378 37 1 3.0663 -1.6419 1.2110 38 1 2.9020 -3.0207 0.0972 39 1 5.5196 -1.6416 0.8475 40 1 4.9646 -3.2180 1.4594 41 1 6.5565 -3.5028 -0.4208 42 1 4.9396 -4.1074 -0.8555 43 1 6.0670 -1.3635 -1.5744 44 1 5.9016 -2.7423 -2.6883 45 1 4.3544 -1.3207 -4.0177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339078418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:38 Heat of formation + Delta-G solvation = -144.658776 kcal Electronic energy + Delta-G solvation = -22077.043454 eV Core-core repulsion = 18899.443942 eV Total energy + Delta-G solvation = -3177.599512 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.48260 -39.09271 -37.63777 -36.38557 -35.18189 -32.74129 -30.79198 -30.45248 -28.47218 -27.50090 -25.06434 -24.68412 -23.47759 -22.56718 -21.40768 -20.68349 -19.17819 -18.12897 -17.55264 -17.27132 -16.57527 -16.29093 -15.84329 -15.65423 -15.38261 -15.12157 -14.94201 -14.69973 -14.41224 -14.18733 -13.85384 -13.70934 -13.44070 -13.24029 -12.98208 -12.72380 -12.64140 -12.57086 -12.40199 -12.27758 -11.91676 -11.79262 -11.73690 -11.53814 -11.31024 -10.97163 -10.83659 -10.82429 -10.63081 -10.30501 -9.16003 -8.82486 -6.52513 1.52189 1.61594 1.82736 2.50170 2.89502 3.04504 3.09636 3.33423 3.67312 3.85727 4.04042 4.06934 4.10151 4.18152 4.30523 4.36007 4.41336 4.42255 4.46487 4.50220 4.50500 4.56007 4.59631 4.65497 4.72219 4.84512 4.85343 4.93363 4.97820 5.00866 5.09536 5.20908 5.22967 5.28217 5.35463 5.54974 5.57425 5.70425 5.92882 6.10733 6.20331 6.34790 6.72304 6.96056 7.28426 8.58584 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017602 B = 0.004753 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.361278 B = 5889.752333 C = 7034.510224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.551 5.551 3 C 0.072 3.928 4 C 0.056 3.944 5 O -0.385 6.385 6 C 0.197 3.803 7 C -0.617 4.617 8 H 0.052 0.948 9 C -0.029 4.029 10 N -0.930 5.930 11 Si 1.127 2.873 12 H -0.275 1.275 13 H -0.267 1.267 14 H -0.267 1.267 15 C 0.071 3.929 16 C -0.070 4.070 17 H 0.048 0.952 18 C -0.099 4.099 19 C -0.125 4.125 20 C -0.110 4.110 21 C -0.145 4.145 22 C 0.116 3.884 23 H 0.069 0.931 24 O -0.583 6.583 25 H 0.037 0.963 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.044 0.956 32 H -0.022 1.022 33 H -0.022 1.022 34 H 0.254 0.746 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.088 0.912 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.430 -11.643 -20.595 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.275 5.275 3 C -0.056 4.056 4 C -0.021 4.021 5 O -0.304 6.304 6 C 0.121 3.879 7 C -0.655 4.655 8 H 0.070 0.930 9 C -0.226 4.226 10 N -0.566 5.566 11 Si 0.946 3.054 12 H -0.200 1.200 13 H -0.192 1.192 14 H -0.192 1.192 15 C -0.057 4.057 16 C -0.089 4.089 17 H 0.066 0.934 18 C -0.137 4.137 19 C -0.163 4.163 20 C -0.147 4.147 21 C -0.183 4.183 22 C 0.057 3.943 23 H 0.087 0.913 24 O -0.391 6.391 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.062 0.938 32 H -0.005 1.005 33 H -0.005 1.005 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.708 -11.715 -18.151 21.919 hybrid contribution -0.764 1.053 -2.498 2.817 sum 2.943 -10.663 -20.649 23.425 Atomic orbital electron populations 1.22392 0.86810 1.02451 1.00363 1.61780 1.08286 1.13374 1.44096 1.22025 1.00639 0.88959 0.93939 1.22627 0.96119 0.95181 0.88167 1.87936 1.70374 1.57207 1.14872 1.19924 0.93613 0.92402 0.81939 1.22220 1.31732 1.17853 0.93671 0.93009 1.27594 0.96950 0.97056 1.00980 1.70921 1.28941 1.19736 1.37024 0.82842 0.75272 0.74712 0.72609 1.20004 1.19242 1.19197 1.22066 0.95440 0.97642 0.90521 1.21051 0.95471 0.98225 0.94158 0.93383 1.21344 0.96566 0.98307 0.97442 1.21587 0.96039 1.00011 0.98662 1.21459 1.01513 0.98183 0.93583 1.22212 0.96741 0.99753 0.99618 1.21745 0.95413 0.91489 0.85650 0.91269 1.86497 1.86468 1.44368 1.21815 0.94477 0.90229 0.93161 0.91745 0.91193 0.94057 0.93835 1.00466 1.00489 0.93650 0.90076 0.94063 0.93237 0.91240 0.93902 0.91884 0.90973 0.90558 0.92870 0.89395 0.75772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.24 127.69 1.18 1.93 16 2 N -0.55 -17.18 4.10 -922.42 -3.78 -20.96 16 3 C 0.07 2.36 5.17 86.30 0.45 2.81 16 4 C 0.06 2.24 5.99 71.98 0.43 2.67 16 5 O -0.38 -19.98 10.27 -148.98 -1.53 -21.51 16 6 C 0.20 11.49 5.00 71.24 0.36 11.85 16 7 C -0.62 -38.47 9.43 25.60 0.24 -38.23 16 8 H 0.05 3.24 7.81 -2.91 -0.02 3.22 16 9 C -0.03 -1.73 5.46 84.66 0.46 -1.26 16 10 N -0.93 -58.92 13.65 21.45 0.29 -58.63 16 11 Si 1.13 51.71 29.90 68.60 2.05 53.76 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 14 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 15 C 0.07 1.81 4.32 86.30 0.37 2.18 16 16 C -0.07 -1.81 1.99 -10.79 -0.02 -1.83 16 17 H 0.05 1.53 6.67 -2.39 -0.02 1.51 16 18 C -0.10 -2.71 5.09 30.59 0.16 -2.56 16 19 C -0.13 -3.11 5.92 30.59 0.18 -2.92 16 20 C -0.11 -1.94 5.92 30.60 0.18 -1.76 16 21 C -0.15 -2.46 5.54 30.58 0.17 -2.29 16 22 C 0.12 2.20 2.90 30.58 0.09 2.28 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 O -0.58 -10.90 12.56 -148.98 -1.87 -12.77 16 25 H 0.04 0.86 8.07 -2.38 -0.02 0.84 16 26 H 0.08 1.87 7.85 -2.39 -0.02 1.85 16 27 H 0.05 1.56 6.62 -2.39 -0.02 1.55 16 28 H 0.06 1.76 8.07 -2.39 -0.02 1.74 16 29 H 0.07 2.43 6.57 -2.39 -0.02 2.41 16 30 H 0.04 1.60 6.45 -2.39 -0.02 1.58 16 31 H 0.04 1.65 8.14 -2.38 -0.02 1.64 16 32 H -0.02 -1.34 8.01 -2.39 -0.02 -1.36 16 33 H -0.02 -1.34 8.01 -2.38 -0.02 -1.36 16 34 H 0.25 16.32 7.22 -92.71 -0.67 15.65 16 35 H 0.08 1.82 7.74 -2.39 -0.02 1.80 16 36 H 0.04 1.05 7.39 -2.39 -0.02 1.04 16 37 H 0.05 1.79 7.76 -2.38 -0.02 1.78 16 38 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.39 3.59 9.08 -74.06 -0.67 2.92 16 Total: -1.00 -73.41 350.37 -0.23 -73.64 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.37 Total: 13.60 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 4.24 Total: -27.13 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -3.49 Total: -79.59 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -3.40 Total: -34.28 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 2.05 Total: 53.76 kcal Total: -73.41 -0.23 -73.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339078418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.022 kcal (2) G-P(sol) polarization free energy of solvation -73.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds