Wall clock time and date at job start Mon Mar 30 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.63351 * 55.00306 * 4 3 2 6 6 C 1.54310 * 109.63591 * 294.60372 * 4 3 2 7 7 C 1.45877 * 112.18195 * 161.77611 * 6 4 3 8 8 C 1.54309 * 112.19036 * 61.12044 * 7 6 4 9 9 C 1.50436 * 108.49437 * 281.45138 * 8 7 6 10 10 N 1.48000 * 112.82230 * 93.73496 * 9 8 7 11 11 C 1.46905 * 110.99979 * 191.34540 * 10 9 8 12 12 C 1.52996 * 109.47096 * 293.95070 * 11 10 9 13 13 O 1.42896 * 109.47267 * 65.00219 * 12 11 10 14 14 C 1.42900 * 114.00607 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47781 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99577 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00463 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00128 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99760 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47322 * 90.00328 * 19 17 15 21 21 H 1.48501 * 109.47096 * 210.00487 * 19 17 15 22 22 H 1.48502 * 109.47003 * 330.00318 * 19 17 15 23 23 C 1.47746 * 114.70579 * 317.92732 * 10 9 8 24 24 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 25 25 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 26 26 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 28 28 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 29 29 H 1.08994 * 108.94473 * 282.47766 * 6 4 3 30 30 H 1.09006 * 108.93885 * 41.17872 * 6 4 3 31 31 H 1.08994 * 108.94175 * 181.81735 * 7 6 4 32 32 H 1.08999 * 108.93965 * 300.42723 * 7 6 4 33 33 H 1.09008 * 109.63118 * 41.15617 * 8 7 6 34 34 H 1.09003 * 109.63366 * 161.54413 * 8 7 6 35 35 H 1.09004 * 108.81285 * 214.59001 * 9 8 7 36 36 H 1.08996 * 108.81818 * 332.97987 * 9 8 7 37 37 H 1.08992 * 109.46998 * 53.95503 * 11 10 9 38 38 H 1.09004 * 109.46976 * 173.95322 * 11 10 9 39 39 H 1.09000 * 109.47315 * 184.99983 * 12 11 10 40 40 H 1.09001 * 109.47369 * 305.00182 * 12 11 10 41 41 H 1.09005 * 109.46683 * 300.00526 * 14 13 12 42 42 H 1.09005 * 109.47172 * 59.99487 * 14 13 12 43 43 H 0.97001 * 119.99944 * 179.97438 * 18 17 15 44 44 H 1.08992 * 108.87664 * 197.39440 * 23 10 9 45 45 H 1.09004 * 108.59806 * 79.20825 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8543 0.5686 -0.8401 6 6 4.0040 0.5408 1.3224 7 6 5.3600 0.0114 1.2268 8 6 6.3938 1.1115 0.9070 9 6 6.3225 1.4205 -0.5635 10 7 5.4203 2.5532 -0.8690 11 6 5.1686 2.6511 -2.3130 12 6 6.4679 3.0162 -3.0336 13 8 7.4099 1.9520 -2.8855 14 6 8.6650 2.1934 -3.5247 15 6 9.5757 1.0129 -3.3058 16 1 9.2307 0.1633 -2.7351 17 6 10.8496 1.0177 -3.8330 18 7 11.6445 -0.0124 -3.6414 19 14 11.4465 2.4875 -4.8194 20 1 12.0882 3.4681 -3.9074 21 1 12.4329 2.0355 -5.8334 22 1 10.2930 3.1271 -5.5017 23 6 4.1509 2.5528 -0.1131 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8465 -0.8900 28 1 1.6885 1.8463 0.8900 29 1 3.9719 1.2910 2.1124 30 1 3.3255 -0.2727 1.5797 31 1 5.6243 -0.4577 2.1744 32 1 5.3908 -0.7424 0.4400 33 1 6.1633 2.0088 1.4815 34 1 7.3935 0.7599 1.1624 35 1 7.3235 1.6622 -0.9209 36 1 5.9653 0.5364 -1.0916 37 1 4.8040 1.6933 -2.6840 38 1 4.4206 3.4217 -2.5000 39 1 6.2637 3.1759 -4.0923 40 1 6.8793 3.9283 -2.6013 41 1 8.5067 2.3364 -4.5937 42 1 9.1218 3.0884 -3.1022 43 1 12.5406 -0.0091 -4.0127 44 1 3.4437 3.2160 -0.6112 45 1 4.3429 2.9362 0.8890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339097772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:00 Heat of formation + Delta-G solvation = -96.495938 kcal Electronic energy + Delta-G solvation = -22054.572015 eV Core-core repulsion = 18879.061000 eV Total energy + Delta-G solvation = -3175.511015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.69743 -37.82880 -36.82016 -34.34236 -32.78895 -32.55439 -29.71067 -28.05584 -27.46399 -26.07289 -24.77411 -23.57036 -21.82819 -21.48367 -20.32323 -19.23949 -16.83046 -16.76067 -16.25325 -16.01147 -15.74595 -15.22205 -15.21577 -14.53708 -14.18782 -14.01910 -13.97128 -13.43075 -12.94662 -12.63231 -12.49590 -12.37855 -12.16672 -12.08118 -11.84623 -11.52411 -11.27072 -11.11340 -10.95755 -10.84759 -10.64484 -10.57542 -10.31946 -10.17613 -9.97666 -9.84437 -9.78126 -9.14271 -8.77066 -8.40600 -7.86574 -6.09904 -4.08659 3.26424 3.33351 3.35019 3.54948 4.13503 4.37343 4.56152 4.73109 4.79257 4.91037 5.05322 5.07206 5.18253 5.21948 5.25840 5.28020 5.37828 5.40769 5.49974 5.54859 5.64000 5.69544 5.72240 5.83650 5.97154 6.01309 6.08662 6.11900 6.21937 6.25793 6.30640 6.39370 6.45406 6.63376 6.65277 6.95416 6.97256 7.04634 7.41496 7.51869 7.62870 8.04477 8.68617 9.01284 9.49873 11.03056 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.028772 B = 0.003873 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.920044 B = 7228.071469 C = 7576.408564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.071 3.929 4 C -0.117 4.117 5 H 0.081 0.919 6 C -0.104 4.104 7 C -0.123 4.123 8 C -0.121 4.121 9 C 0.059 3.941 10 N -0.541 5.541 11 C 0.063 3.937 12 C 0.060 3.940 13 O -0.376 6.376 14 C 0.167 3.833 15 C -0.517 4.517 16 H 0.082 0.918 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.875 3.125 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.267 1.267 23 C 0.065 3.935 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.034 0.966 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.040 0.960 40 H 0.047 0.953 41 H 0.000 1.000 42 H -0.001 1.001 43 H 0.266 0.734 44 H 0.063 0.937 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.241 5.084 8.404 22.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.006 4.006 4 C -0.137 4.137 5 H 0.100 0.900 6 C -0.141 4.141 7 C -0.161 4.161 8 C -0.158 4.158 9 C -0.067 4.067 10 N -0.265 5.265 11 C -0.065 4.065 12 C -0.018 4.018 13 O -0.295 6.295 14 C 0.092 3.908 15 C -0.555 4.555 16 H 0.100 0.900 17 C -0.130 4.130 18 N -0.534 5.534 19 Si 0.702 3.298 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.191 1.191 23 C -0.063 4.063 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.018 0.982 42 H 0.016 0.984 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.721 5.063 8.604 22.104 hybrid contribution -0.221 0.451 -1.008 1.126 sum -19.941 5.514 7.596 22.040 Atomic orbital electron populations 1.22717 0.81408 1.02625 0.99759 1.87914 1.19305 1.28194 1.95331 1.22604 0.93768 0.84456 0.99789 1.21565 0.92668 0.99472 0.99968 0.90047 1.20498 0.97116 1.00431 0.96070 1.20621 0.94971 0.98753 1.01719 1.21483 0.99094 0.98317 0.96949 1.22054 0.99023 0.90896 0.94677 1.61987 1.13618 1.45186 1.05758 1.22141 0.96324 1.00258 0.87811 1.22362 0.90177 0.91884 0.97346 1.87949 1.25060 1.40602 1.75879 1.20582 0.81607 0.97202 0.91411 1.20883 0.96765 1.03065 1.34739 0.90001 1.24766 0.96223 0.96091 0.95894 1.69876 1.08178 1.29871 1.45516 0.86856 0.79101 0.83284 0.80532 1.19943 1.20894 1.19142 1.21834 0.90465 0.94307 0.99687 0.94255 0.94240 0.89763 0.93486 0.93329 0.92533 0.91776 0.92445 0.92090 0.91437 0.91019 0.87288 0.94745 0.94370 0.90539 0.94177 0.93469 0.98190 0.98376 0.92419 0.91851 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.47 10.04 -35.23 -0.35 -4.82 16 3 C 0.07 0.72 5.14 37.16 0.19 0.91 16 4 C -0.12 -1.37 2.08 -91.21 -0.19 -1.56 16 5 H 0.08 1.16 6.87 -51.93 -0.36 0.81 16 6 C -0.10 -1.20 4.69 -29.42 -0.14 -1.34 16 7 C -0.12 -1.58 5.30 -29.42 -0.16 -1.73 16 8 C -0.12 -1.73 5.63 -27.33 -0.15 -1.88 16 9 C 0.06 1.00 3.96 -4.50 -0.02 0.99 16 10 N -0.54 -8.04 4.68 -236.13 -1.11 -9.14 16 11 C 0.06 0.93 5.45 -3.82 -0.02 0.91 16 12 C 0.06 1.06 6.19 37.16 0.23 1.29 16 13 O -0.38 -8.49 7.08 -35.23 -0.25 -8.74 16 14 C 0.17 4.22 4.76 36.00 0.17 4.39 16 15 C -0.52 -15.22 9.99 -34.44 -0.34 -15.56 16 16 H 0.08 2.63 8.06 -52.49 -0.42 2.21 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 19 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 23 C 0.07 0.77 4.71 -4.63 -0.02 0.74 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.44 7.98 -51.93 -0.41 0.03 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.60 7.53 -51.93 -0.39 0.21 16 30 H 0.06 0.76 7.44 -51.93 -0.39 0.37 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.86 7.52 -51.93 -0.39 0.47 16 33 H 0.07 0.91 7.09 -51.92 -0.37 0.54 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.11 2.25 5.88 -51.93 -0.31 1.95 16 36 H 0.03 0.63 6.37 -51.93 -0.33 0.30 16 37 H 0.04 0.60 7.83 -51.93 -0.41 0.19 16 38 H 0.08 0.92 7.66 -51.93 -0.40 0.52 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.00 0.01 7.20 -51.93 -0.37 -0.36 16 42 H 0.00 -0.04 7.57 -51.93 -0.39 -0.43 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.06 0.65 7.01 -51.93 -0.36 0.29 16 45 H 0.07 0.83 6.61 -51.93 -0.34 0.49 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -31.28 340.39 -8.10 -39.38 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -8.19 Total: -2.31 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 0.57 Total: -9.46 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.33 Total: -36.01 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.60 Total: -13.56 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.28 -8.10 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339097772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.118 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds