Wall clock time and date at job start Mon Mar 30 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.63351 * 55.00306 * 4 3 2 6 6 C 1.54310 * 109.63591 * 294.60372 * 4 3 2 7 7 C 1.45877 * 112.18195 * 161.77611 * 6 4 3 8 8 C 1.54309 * 112.19036 * 61.12044 * 7 6 4 9 9 C 1.50436 * 108.49437 * 281.45138 * 8 7 6 10 10 N 1.48000 * 112.82230 * 93.73496 * 9 8 7 11 11 C 1.46905 * 110.99979 * 191.34540 * 10 9 8 12 12 C 1.52996 * 109.47096 * 293.95070 * 11 10 9 13 13 O 1.42896 * 109.47267 * 65.00219 * 12 11 10 14 14 C 1.42900 * 114.00607 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47781 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99577 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00463 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00128 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99760 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47322 * 90.00328 * 19 17 15 21 21 H 1.48501 * 109.47096 * 210.00487 * 19 17 15 22 22 H 1.48502 * 109.47003 * 330.00318 * 19 17 15 23 23 C 1.47746 * 114.70579 * 317.92732 * 10 9 8 24 24 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 25 25 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 26 26 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 28 28 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 29 29 H 1.08994 * 108.94473 * 282.47766 * 6 4 3 30 30 H 1.09006 * 108.93885 * 41.17872 * 6 4 3 31 31 H 1.08994 * 108.94175 * 181.81735 * 7 6 4 32 32 H 1.08999 * 108.93965 * 300.42723 * 7 6 4 33 33 H 1.09008 * 109.63118 * 41.15617 * 8 7 6 34 34 H 1.09003 * 109.63366 * 161.54413 * 8 7 6 35 35 H 1.09004 * 108.81285 * 214.59001 * 9 8 7 36 36 H 1.08996 * 108.81818 * 332.97987 * 9 8 7 37 37 H 1.08992 * 109.46998 * 53.95503 * 11 10 9 38 38 H 1.09004 * 109.46976 * 173.95322 * 11 10 9 39 39 H 1.09000 * 109.47315 * 184.99983 * 12 11 10 40 40 H 1.09001 * 109.47369 * 305.00182 * 12 11 10 41 41 H 1.09005 * 109.46683 * 300.00526 * 14 13 12 42 42 H 1.09005 * 109.47172 * 59.99487 * 14 13 12 43 43 H 0.97001 * 119.99944 * 179.97438 * 18 17 15 44 44 H 1.08992 * 108.87664 * 197.39440 * 23 10 9 45 45 H 1.09004 * 108.59806 * 79.20825 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8543 0.5686 -0.8401 6 6 4.0040 0.5408 1.3224 7 6 5.3600 0.0114 1.2268 8 6 6.3938 1.1115 0.9070 9 6 6.3225 1.4205 -0.5635 10 7 5.4203 2.5532 -0.8690 11 6 5.1686 2.6511 -2.3130 12 6 6.4679 3.0162 -3.0336 13 8 7.4099 1.9520 -2.8855 14 6 8.6650 2.1934 -3.5247 15 6 9.5757 1.0129 -3.3058 16 1 9.2307 0.1633 -2.7351 17 6 10.8496 1.0177 -3.8330 18 7 11.6445 -0.0124 -3.6414 19 14 11.4465 2.4875 -4.8194 20 1 12.0882 3.4681 -3.9074 21 1 12.4329 2.0355 -5.8334 22 1 10.2930 3.1271 -5.5017 23 6 4.1509 2.5528 -0.1131 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8465 -0.8900 28 1 1.6885 1.8463 0.8900 29 1 3.9719 1.2910 2.1124 30 1 3.3255 -0.2727 1.5797 31 1 5.6243 -0.4577 2.1744 32 1 5.3908 -0.7424 0.4400 33 1 6.1633 2.0088 1.4815 34 1 7.3935 0.7599 1.1624 35 1 7.3235 1.6622 -0.9209 36 1 5.9653 0.5364 -1.0916 37 1 4.8040 1.6933 -2.6840 38 1 4.4206 3.4217 -2.5000 39 1 6.2637 3.1759 -4.0923 40 1 6.8793 3.9283 -2.6013 41 1 8.5067 2.3364 -4.5937 42 1 9.1218 3.0884 -3.1022 43 1 12.5406 -0.0091 -4.0127 44 1 3.4437 3.2160 -0.6112 45 1 4.3429 2.9362 0.8890 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339097772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:59 Heat of formation + Delta-G solvation = -118.402849 kcal Electronic energy + Delta-G solvation = -22055.521970 eV Core-core repulsion = 18879.061000 eV Total energy + Delta-G solvation = -3176.460970 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.76384 -38.91257 -38.21901 -35.62201 -34.73721 -33.81306 -31.21427 -29.62224 -28.64173 -26.99545 -25.84272 -24.66198 -23.90078 -22.71114 -21.40197 -20.37586 -19.01476 -17.76994 -17.46445 -17.23555 -16.76421 -16.51737 -16.36659 -16.30177 -15.36727 -15.27923 -15.14959 -14.70492 -14.57271 -14.12557 -13.92152 -13.38288 -13.33365 -13.20285 -13.08893 -13.00354 -12.67676 -12.34542 -12.28993 -12.23201 -12.04481 -11.82554 -11.60691 -11.51796 -11.35068 -11.26293 -11.07458 -10.88542 -10.55792 -10.20088 -9.09894 -8.36503 -6.43764 1.33041 1.35946 1.46741 2.29583 2.78875 2.96256 3.01226 3.14799 3.63572 3.85046 3.94617 4.14314 4.18339 4.33514 4.35319 4.37999 4.45281 4.49335 4.53286 4.54121 4.58716 4.65565 4.69263 4.71652 4.72567 4.81852 4.85699 4.91737 4.95848 5.05089 5.06234 5.15924 5.23965 5.36046 5.40208 5.43741 5.45489 5.57792 5.95421 6.16126 6.26122 6.36759 6.60218 6.77954 7.20771 8.80575 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.028772 B = 0.003873 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.920044 B = 7228.071469 C = 7576.408564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.074 3.926 4 C -0.112 4.112 5 H 0.048 0.952 6 C -0.101 4.101 7 C -0.116 4.116 8 C -0.116 4.116 9 C 0.073 3.927 10 N -0.545 5.545 11 C 0.067 3.933 12 C 0.051 3.949 13 O -0.396 6.396 14 C 0.179 3.821 15 C -0.540 4.540 16 H 0.029 0.971 17 C 0.012 3.988 18 N -0.943 5.943 19 Si 0.955 3.045 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.246 1.246 23 C 0.066 3.934 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.006 0.994 37 H 0.024 0.976 38 H 0.117 0.883 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.008 0.992 42 H 0.008 0.992 43 H 0.272 0.728 44 H 0.089 0.911 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.117 7.989 8.483 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.003 4.003 4 C -0.132 4.132 5 H 0.066 0.934 6 C -0.138 4.138 7 C -0.154 4.154 8 C -0.154 4.154 9 C -0.054 4.054 10 N -0.270 5.270 11 C -0.061 4.061 12 C -0.026 4.026 13 O -0.316 6.316 14 C 0.103 3.897 15 C -0.577 4.577 16 H 0.048 0.952 17 C -0.186 4.186 18 N -0.582 5.582 19 Si 0.776 3.224 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.170 1.170 23 C -0.061 4.061 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.025 0.975 37 H 0.042 0.958 38 H 0.135 0.865 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.636 7.972 8.694 24.643 hybrid contribution 0.288 -0.552 -0.974 1.156 sum -21.348 7.420 7.720 23.883 Atomic orbital electron populations 1.22889 0.79677 1.03519 1.00891 1.87872 1.21298 1.29093 1.95578 1.22594 0.92154 0.84338 1.01235 1.21472 0.94335 0.98782 0.98648 0.93397 1.20469 0.95720 1.00927 0.96681 1.20555 0.95669 0.97693 1.01467 1.21422 0.99084 0.99493 0.95354 1.21748 0.97248 0.90540 0.95836 1.61941 1.15245 1.43635 1.06176 1.22198 0.95540 1.00821 0.87511 1.22713 0.90174 0.90784 0.98969 1.87967 1.24874 1.42969 1.75774 1.20267 0.82286 0.95226 0.91898 1.21136 0.98491 1.03359 1.34760 0.95247 1.25830 0.95996 0.99806 0.96925 1.70036 1.08887 1.32548 1.46775 0.85614 0.79130 0.78722 0.78899 1.18458 1.19946 1.16984 1.21930 0.89292 0.94774 1.00132 0.92756 0.93386 0.89155 0.92501 0.91254 0.90489 0.91912 0.91033 0.94532 0.89777 0.92304 0.91654 0.97547 0.95815 0.86494 0.92589 0.92810 0.97415 0.97431 0.91885 0.89306 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -9.01 10.04 -148.98 -1.50 -10.50 16 3 C 0.07 1.31 5.14 71.98 0.37 1.68 16 4 C -0.11 -2.48 2.08 -11.17 -0.02 -2.51 16 5 H 0.05 1.40 6.87 -2.39 -0.02 1.38 16 6 C -0.10 -2.19 4.69 28.85 0.14 -2.06 16 7 C -0.12 -3.02 5.30 28.85 0.15 -2.87 16 8 C -0.12 -3.40 5.63 30.21 0.17 -3.23 16 9 C 0.07 2.60 3.96 85.26 0.34 2.94 16 10 N -0.55 -15.72 4.68 -900.98 -4.22 -19.94 16 11 C 0.07 1.90 5.45 86.30 0.47 2.37 16 12 C 0.05 1.73 6.19 71.98 0.45 2.18 16 13 O -0.40 -18.45 7.08 -148.98 -1.05 -19.50 16 14 C 0.18 9.11 4.76 71.23 0.34 9.45 16 15 C -0.54 -33.26 9.99 25.60 0.26 -33.00 16 16 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 17 C 0.01 0.73 5.47 84.65 0.46 1.19 16 18 N -0.94 -60.10 13.96 21.45 0.30 -59.80 16 19 Si 0.95 44.09 27.47 68.60 1.88 45.97 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 23 C 0.07 1.38 4.71 85.32 0.40 1.78 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 0.89 7.98 -2.39 -0.02 0.87 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.08 1.39 7.53 -2.39 -0.02 1.37 16 30 H 0.06 1.41 7.44 -2.38 -0.02 1.39 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.11 7.52 -2.39 -0.02 1.09 16 33 H 0.08 2.18 7.09 -2.38 -0.02 2.16 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 2.90 5.88 -2.38 -0.01 2.89 16 36 H 0.01 0.25 6.37 -2.39 -0.02 0.23 16 37 H 0.02 0.74 7.83 -2.39 -0.02 0.72 16 38 H 0.12 2.38 7.66 -2.38 -0.02 2.37 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.01 0.40 7.20 -2.38 -0.02 0.38 16 42 H 0.01 0.39 7.57 -2.38 -0.02 0.37 16 43 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 44 H 0.09 1.45 7.01 -2.39 -0.02 1.43 16 45 H 0.09 1.63 6.61 -2.39 -0.02 1.62 16 Total: -1.00 -71.82 340.39 1.06 -70.76 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.88 Total: 13.46 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 4.77 Total: -20.45 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -3.92 Total: -79.74 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -2.55 Total: -30.00 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.97 kcal Total: -71.82 1.06 -70.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339097772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.643 kcal (2) G-P(sol) polarization free energy of solvation -71.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds