Wall clock time and date at job start Mon Mar 30 2020 06:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99808 * 2 1 4 4 C 1.53005 * 109.46737 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.54487 * 305.17960 * 4 3 2 6 6 C 1.50754 * 109.62024 * 65.41078 * 4 3 2 7 7 C 1.54171 * 112.61088 * 212.92765 * 6 4 3 8 8 C 1.53828 * 111.96741 * 318.48777 * 7 6 4 9 9 C 1.50815 * 111.61839 * 319.04305 * 8 7 6 10 10 N 1.47634 * 108.05613 * 95.06198 * 9 8 7 11 11 C 1.46900 * 111.00195 * 150.34633 * 10 9 8 12 12 C 1.53002 * 109.46956 * 204.81571 * 11 10 9 13 13 O 1.42898 * 109.47186 * 64.58355 * 12 11 10 14 14 C 1.42902 * 113.99711 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.47226 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99645 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00322 * 179.72604 * 15 14 13 18 18 N 1.31513 * 120.00159 * 180.27694 * 17 15 14 19 19 Si 1.86800 * 119.99759 * 0.27754 * 17 15 14 20 20 H 1.48495 * 109.47348 * 90.00282 * 19 17 15 21 21 H 1.48502 * 109.47042 * 210.00323 * 19 17 15 22 22 H 1.48500 * 109.47175 * 329.99963 * 19 17 15 23 23 C 1.39776 * 114.75289 * 277.19678 * 10 9 8 24 24 H 1.09000 * 109.47058 * 59.99605 * 1 2 3 25 25 H 1.08999 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46733 * 300.00101 * 1 2 3 27 27 H 1.08999 * 109.47536 * 60.00303 * 3 2 1 28 28 H 1.09003 * 109.47406 * 299.99785 * 3 2 1 29 29 H 1.08998 * 108.85074 * 333.73070 * 6 4 3 30 30 H 1.08997 * 108.85761 * 92.11890 * 6 4 3 31 31 H 1.09002 * 108.97962 * 79.12657 * 7 6 4 32 32 H 1.08996 * 108.97895 * 197.92971 * 7 6 4 33 33 H 1.09001 * 109.04991 * 79.59052 * 8 7 6 34 34 H 1.08993 * 109.05050 * 198.56570 * 8 7 6 35 35 H 1.08997 * 109.75051 * 335.41358 * 9 8 7 36 36 H 1.09012 * 109.74254 * 214.69656 * 9 8 7 37 37 H 1.08991 * 109.47174 * 84.81130 * 11 10 9 38 38 H 1.09000 * 109.47050 * 324.80483 * 11 10 9 39 39 H 1.09007 * 109.47119 * 304.58786 * 12 11 10 40 40 H 1.08997 * 109.47251 * 184.59021 * 12 11 10 41 41 H 1.09002 * 109.47527 * 60.00409 * 14 13 12 42 42 H 1.08993 * 109.47564 * 300.00173 * 14 13 12 43 43 H 0.96998 * 120.00117 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.01651 * 182.86577 * 23 10 9 45 45 H 1.09007 * 109.01955 * 301.75738 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8526 0.5657 0.8386 6 6 3.9929 0.5558 -1.2922 7 6 5.2524 -0.3154 -1.1139 8 6 6.2800 0.3435 -0.1779 9 6 6.3936 1.8256 -0.4328 10 7 5.5052 2.5229 0.5180 11 6 6.0252 3.8579 0.8425 12 6 5.4958 4.2929 2.2105 13 8 6.0108 3.4219 3.2195 14 6 5.5742 3.7423 4.5419 15 6 6.1750 2.7655 5.5198 16 1 6.8255 1.9790 5.1666 17 6 5.8992 2.8797 6.8658 18 7 6.4278 2.0306 7.7197 19 14 4.7746 4.2404 7.4766 20 1 3.3707 3.7566 7.4836 21 1 5.1710 4.6293 8.8539 22 1 4.8882 5.4172 6.5780 23 6 4.1651 2.5890 0.1262 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.1882 -0.0650 -1.6861 30 1 4.2099 1.3457 -2.0111 31 1 4.9605 -1.2795 -0.6974 32 1 5.7136 -0.4753 -2.0884 33 1 5.9740 0.1828 0.8559 34 1 7.2539 -0.1193 -0.3366 35 1 6.0866 2.0482 -1.4547 36 1 7.4235 2.1479 -0.2786 37 1 5.6991 4.5691 0.0837 38 1 7.1145 3.8272 0.8676 39 1 4.4068 4.2451 2.2106 40 1 5.8146 5.3149 2.4153 41 1 4.4869 3.6828 4.5901 42 1 5.8943 4.7529 4.7954 43 1 6.2341 2.1111 8.6667 44 1 3.6067 3.1632 0.8655 45 1 4.1013 3.0941 -0.8377 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339097773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:03 Heat of formation + Delta-G solvation = -93.092109 kcal Electronic energy + Delta-G solvation = -21977.641619 eV Core-core repulsion = 18802.278205 eV Total energy + Delta-G solvation = -3175.363413 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.77029 -37.82989 -36.70552 -34.53331 -32.82621 -32.53732 -29.63163 -27.87787 -27.42009 -26.00882 -25.24313 -23.67150 -21.77129 -21.35723 -20.44810 -19.27005 -16.83333 -16.52196 -16.35600 -15.98478 -15.56832 -15.21268 -14.98059 -14.74465 -14.36019 -14.26543 -14.06582 -13.51417 -13.14635 -12.71369 -12.49559 -12.39148 -12.18684 -12.06605 -11.63169 -11.49447 -11.30666 -11.22236 -10.86836 -10.80823 -10.65380 -10.45858 -10.28544 -10.24343 -10.12861 -9.80131 -9.71205 -9.09522 -8.75554 -8.37174 -7.92531 -6.05454 -4.03371 3.27987 3.34624 3.36192 3.55568 4.14859 4.40413 4.70256 4.76849 4.84525 4.88736 5.08805 5.16450 5.19916 5.25562 5.25988 5.32879 5.36688 5.40521 5.45869 5.51057 5.55265 5.63584 5.67945 5.78590 5.86440 5.90320 5.91075 5.95008 6.08282 6.20098 6.24118 6.27168 6.32583 6.48475 6.63504 6.67697 7.07406 7.08631 7.33928 7.63957 7.67438 8.13608 8.76388 9.08195 9.54643 11.07844 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.004701 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.390403 B = 5954.653692 C = 6741.742729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.069 3.931 4 C -0.086 4.086 5 H 0.097 0.903 6 C -0.110 4.110 7 C -0.114 4.114 8 C -0.123 4.123 9 C 0.071 3.929 10 N -0.542 5.542 11 C 0.067 3.933 12 C 0.062 3.938 13 O -0.363 6.363 14 C 0.168 3.832 15 C -0.513 4.513 16 H 0.083 0.917 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.875 3.125 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.267 1.267 23 C 0.087 3.913 24 H 0.037 0.963 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.039 0.961 41 H -0.005 1.005 42 H -0.001 1.001 43 H 0.265 0.735 44 H 0.072 0.928 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.028 0.549 -20.420 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.008 4.008 4 C -0.105 4.105 5 H 0.115 0.885 6 C -0.148 4.148 7 C -0.152 4.152 8 C -0.161 4.161 9 C -0.055 4.055 10 N -0.265 5.265 11 C -0.060 4.060 12 C -0.016 4.016 13 O -0.282 6.282 14 C 0.093 3.907 15 C -0.551 4.551 16 H 0.101 0.899 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.702 3.298 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.043 4.043 24 H 0.056 0.944 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -7.779 -0.084 -19.875 21.343 hybrid contribution -1.133 1.645 -0.130 2.002 sum -8.912 1.562 -20.004 21.955 Atomic orbital electron populations 1.22718 0.81349 1.02587 0.99813 1.87881 1.19327 1.28077 1.95343 1.22512 0.93913 0.84465 0.99907 1.21026 0.91937 0.97396 1.00145 0.88511 1.21395 0.97648 0.99033 0.96715 1.21882 0.95238 0.98909 0.99137 1.21455 0.98425 0.94525 1.01672 1.21814 0.96215 0.94673 0.92836 1.58444 1.01673 1.19743 1.46681 1.22125 1.00683 0.88270 0.94908 1.22357 0.96959 0.93113 0.89157 1.88004 1.71252 1.53260 1.15686 1.20568 0.93719 0.95977 0.80470 1.20903 1.29979 1.14168 0.90049 0.89918 1.24760 0.95883 0.96008 0.96341 1.69878 1.44414 1.36609 1.02699 0.86870 0.81503 0.82975 0.78494 1.20021 1.20864 1.19195 1.20848 0.89767 0.95621 0.98033 0.94412 0.89759 0.94032 0.93018 0.93747 0.91653 0.93073 0.92115 0.92858 0.89762 0.92145 0.94616 0.90972 0.94123 0.90018 0.94663 0.94341 0.98705 0.98352 0.92473 0.90991 0.96840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.92 9.99 -35.23 -0.35 -5.28 16 3 C 0.07 0.81 5.18 37.16 0.19 1.00 16 4 C -0.09 -1.11 2.15 -90.99 -0.20 -1.30 16 5 H 0.10 1.52 7.11 -51.93 -0.37 1.15 16 6 C -0.11 -1.26 4.83 -27.24 -0.13 -1.39 16 7 C -0.11 -1.29 5.91 -25.69 -0.15 -1.44 16 8 C -0.12 -1.57 5.41 -27.40 -0.15 -1.71 16 9 C 0.07 0.90 5.36 -4.52 -0.02 0.88 16 10 N -0.54 -7.97 3.82 -240.00 -0.92 -8.88 16 11 C 0.07 0.97 5.42 -3.82 -0.02 0.95 16 12 C 0.06 1.11 6.10 37.16 0.23 1.33 16 13 O -0.36 -8.64 10.27 -35.23 -0.36 -9.01 16 14 C 0.17 4.38 4.76 36.01 0.17 4.55 16 15 C -0.51 -15.59 9.99 -34.44 -0.34 -15.93 16 16 H 0.08 2.76 8.06 -52.48 -0.42 2.33 16 17 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 19 Si 0.87 21.78 27.47 -169.99 -4.67 17.11 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 23 C 0.09 1.14 4.15 -6.75 -0.03 1.11 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.61 8.05 -51.93 -0.42 0.20 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.75 7.18 -51.93 -0.37 0.38 16 30 H 0.05 0.55 6.57 -51.93 -0.34 0.21 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.32 7.26 -51.93 -0.38 0.95 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.41 6.66 -51.93 -0.35 0.06 16 36 H 0.07 0.89 7.38 -51.92 -0.38 0.50 16 37 H 0.04 0.49 7.97 -51.93 -0.41 0.07 16 38 H 0.08 1.18 7.41 -51.93 -0.38 0.79 16 39 H 0.04 0.60 6.61 -51.93 -0.34 0.26 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.00 -0.12 7.58 -51.93 -0.39 -0.51 16 42 H 0.00 -0.03 7.19 -51.93 -0.37 -0.40 16 43 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.07 0.99 6.20 -51.93 -0.32 0.67 16 45 H 0.01 0.16 7.54 -51.93 -0.39 -0.23 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -32.78 344.23 -7.98 -40.76 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -8.20 Total: -4.01 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 0.56 Total: -8.50 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.14 Total: -36.26 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.71 Total: -14.28 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.78 -7.98 -40.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339097773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.336 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds