Wall clock time and date at job start Mon Mar 30 2020 06:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99808 * 2 1 4 4 C 1.53005 * 109.46737 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.54487 * 305.17960 * 4 3 2 6 6 C 1.50754 * 109.62024 * 65.41078 * 4 3 2 7 7 C 1.54171 * 112.61088 * 212.92765 * 6 4 3 8 8 C 1.53828 * 111.96741 * 318.48777 * 7 6 4 9 9 C 1.50815 * 111.61839 * 319.04305 * 8 7 6 10 10 N 1.47634 * 108.05613 * 95.06198 * 9 8 7 11 11 C 1.46900 * 111.00195 * 150.34633 * 10 9 8 12 12 C 1.53002 * 109.46956 * 204.81571 * 11 10 9 13 13 O 1.42898 * 109.47186 * 64.58355 * 12 11 10 14 14 C 1.42902 * 113.99711 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.47226 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99645 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00322 * 179.72604 * 15 14 13 18 18 N 1.31513 * 120.00159 * 180.27694 * 17 15 14 19 19 Si 1.86800 * 119.99759 * 0.27754 * 17 15 14 20 20 H 1.48495 * 109.47348 * 90.00282 * 19 17 15 21 21 H 1.48502 * 109.47042 * 210.00323 * 19 17 15 22 22 H 1.48500 * 109.47175 * 329.99963 * 19 17 15 23 23 C 1.39776 * 114.75289 * 277.19678 * 10 9 8 24 24 H 1.09000 * 109.47058 * 59.99605 * 1 2 3 25 25 H 1.08999 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46733 * 300.00101 * 1 2 3 27 27 H 1.08999 * 109.47536 * 60.00303 * 3 2 1 28 28 H 1.09003 * 109.47406 * 299.99785 * 3 2 1 29 29 H 1.08998 * 108.85074 * 333.73070 * 6 4 3 30 30 H 1.08997 * 108.85761 * 92.11890 * 6 4 3 31 31 H 1.09002 * 108.97962 * 79.12657 * 7 6 4 32 32 H 1.08996 * 108.97895 * 197.92971 * 7 6 4 33 33 H 1.09001 * 109.04991 * 79.59052 * 8 7 6 34 34 H 1.08993 * 109.05050 * 198.56570 * 8 7 6 35 35 H 1.08997 * 109.75051 * 335.41358 * 9 8 7 36 36 H 1.09012 * 109.74254 * 214.69656 * 9 8 7 37 37 H 1.08991 * 109.47174 * 84.81130 * 11 10 9 38 38 H 1.09000 * 109.47050 * 324.80483 * 11 10 9 39 39 H 1.09007 * 109.47119 * 304.58786 * 12 11 10 40 40 H 1.08997 * 109.47251 * 184.59021 * 12 11 10 41 41 H 1.09002 * 109.47527 * 60.00409 * 14 13 12 42 42 H 1.08993 * 109.47564 * 300.00173 * 14 13 12 43 43 H 0.96998 * 120.00117 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.01651 * 182.86577 * 23 10 9 45 45 H 1.09007 * 109.01955 * 301.75738 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8526 0.5657 0.8386 6 6 3.9929 0.5558 -1.2922 7 6 5.2524 -0.3154 -1.1139 8 6 6.2800 0.3435 -0.1779 9 6 6.3936 1.8256 -0.4328 10 7 5.5052 2.5229 0.5180 11 6 6.0252 3.8579 0.8425 12 6 5.4958 4.2929 2.2105 13 8 6.0108 3.4219 3.2195 14 6 5.5742 3.7423 4.5419 15 6 6.1750 2.7655 5.5198 16 1 6.8255 1.9790 5.1666 17 6 5.8992 2.8797 6.8658 18 7 6.4278 2.0306 7.7197 19 14 4.7746 4.2404 7.4766 20 1 3.3707 3.7566 7.4836 21 1 5.1710 4.6293 8.8539 22 1 4.8882 5.4172 6.5780 23 6 4.1651 2.5890 0.1262 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.1882 -0.0650 -1.6861 30 1 4.2099 1.3457 -2.0111 31 1 4.9605 -1.2795 -0.6974 32 1 5.7136 -0.4753 -2.0884 33 1 5.9740 0.1828 0.8559 34 1 7.2539 -0.1193 -0.3366 35 1 6.0866 2.0482 -1.4547 36 1 7.4235 2.1479 -0.2786 37 1 5.6991 4.5691 0.0837 38 1 7.1145 3.8272 0.8676 39 1 4.4068 4.2451 2.2106 40 1 5.8146 5.3149 2.4153 41 1 4.4869 3.6828 4.5901 42 1 5.8943 4.7529 4.7954 43 1 6.2341 2.1111 8.6667 44 1 3.6067 3.1632 0.8655 45 1 4.1013 3.0941 -0.8377 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339097773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:03 Heat of formation + Delta-G solvation = -116.053956 kcal Electronic energy + Delta-G solvation = -21978.637319 eV Core-core repulsion = 18802.278205 eV Total energy + Delta-G solvation = -3176.359114 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80285 -38.88270 -38.26468 -35.70042 -34.76183 -33.80730 -31.15409 -29.41859 -28.62681 -26.97369 -26.23247 -24.73011 -23.92290 -22.53535 -21.51079 -20.24890 -19.03232 -17.61096 -17.46572 -17.21862 -16.90547 -16.46252 -16.24093 -15.94917 -15.89140 -15.40166 -15.22604 -14.72703 -14.63478 -14.38808 -13.76436 -13.57116 -13.34003 -13.16369 -13.04735 -12.72531 -12.64236 -12.47995 -12.35991 -12.21248 -11.87409 -11.79156 -11.57227 -11.39605 -11.26173 -11.22757 -11.11319 -10.90713 -10.58884 -10.25471 -8.96141 -8.36004 -6.43263 1.32073 1.35693 1.46516 2.29820 2.65522 2.96464 3.14971 3.18381 3.80740 3.87556 3.93847 4.15112 4.23132 4.30781 4.31729 4.37264 4.39114 4.46119 4.50166 4.55281 4.55732 4.58688 4.64774 4.67129 4.72619 4.80195 4.84112 4.88920 4.95280 4.98510 5.05093 5.08236 5.22312 5.31639 5.37783 5.46533 5.49317 5.57767 5.97482 6.24312 6.29679 6.60405 6.62831 6.85387 7.21616 8.81551 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.004701 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.390403 B = 5954.653692 C = 6741.742729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.071 3.929 4 C -0.084 4.084 5 H 0.056 0.944 6 C -0.104 4.104 7 C -0.110 4.110 8 C -0.120 4.120 9 C 0.075 3.925 10 N -0.571 5.571 11 C 0.073 3.927 12 C 0.052 3.948 13 O -0.392 6.392 14 C 0.181 3.819 15 C -0.542 4.542 16 H 0.027 0.973 17 C 0.012 3.988 18 N -0.944 5.944 19 Si 0.956 3.044 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.245 1.245 23 C 0.090 3.910 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.004 0.996 42 H 0.010 0.990 43 H 0.272 0.728 44 H 0.062 0.938 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.677 2.822 -22.279 24.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.006 4.006 4 C -0.103 4.103 5 H 0.075 0.925 6 C -0.141 4.141 7 C -0.148 4.148 8 C -0.158 4.158 9 C -0.051 4.051 10 N -0.296 5.296 11 C -0.054 4.054 12 C -0.025 4.025 13 O -0.312 6.312 14 C 0.105 3.895 15 C -0.579 4.579 16 H 0.045 0.955 17 C -0.186 4.186 18 N -0.584 5.584 19 Si 0.777 3.223 20 H -0.186 1.186 21 H -0.197 1.197 22 H -0.168 1.168 23 C -0.040 4.040 24 H 0.074 0.926 25 H 0.113 0.887 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.021 0.979 42 H 0.028 0.972 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.426 2.185 -21.765 23.819 hybrid contribution -0.565 0.823 0.417 1.082 sum -9.991 3.008 -21.348 23.761 Atomic orbital electron populations 1.22908 0.79666 1.03691 1.00747 1.87844 1.21284 1.28679 1.95531 1.22495 0.93028 0.84393 1.00638 1.20970 0.92973 0.96932 0.99440 0.92545 1.21336 0.97440 0.99329 0.96041 1.21853 0.95060 0.98231 0.99645 1.21417 0.99256 0.95504 0.99672 1.21813 0.95997 0.93837 0.93499 1.58363 1.02729 1.20268 1.48243 1.22096 1.00416 0.89092 0.93807 1.22754 0.97578 0.93145 0.89043 1.87961 1.72049 1.55415 1.15753 1.20254 0.93535 0.94784 0.80970 1.21169 1.30276 1.14405 0.92086 0.95473 1.25848 0.97519 0.99100 0.96086 1.70041 1.45981 1.38896 1.03453 0.85604 0.78921 0.79373 0.78393 1.18606 1.19685 1.16811 1.20830 0.88812 0.95571 0.98779 0.92569 0.88698 0.93939 0.93747 0.91399 0.91593 0.91441 0.93208 0.90627 0.93824 0.91313 0.92360 0.90912 0.90445 0.90369 0.93918 0.92586 0.97869 0.97210 0.91860 0.92007 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -10.29 9.99 -148.98 -1.49 -11.78 16 3 C 0.07 1.61 5.18 71.98 0.37 1.98 16 4 C -0.08 -2.13 2.15 -11.03 -0.02 -2.16 16 5 H 0.06 1.88 7.11 -2.39 -0.02 1.86 16 6 C -0.10 -2.21 4.83 30.26 0.15 -2.06 16 7 C -0.11 -2.41 5.91 31.27 0.18 -2.22 16 8 C -0.12 -3.11 5.41 30.16 0.16 -2.94 16 9 C 0.07 1.79 5.36 85.45 0.46 2.25 16 10 N -0.57 -16.33 3.82 -913.21 -3.49 -19.82 16 11 C 0.07 1.97 5.42 86.30 0.47 2.44 16 12 C 0.05 1.77 6.10 71.98 0.44 2.21 16 13 O -0.39 -18.91 10.27 -148.98 -1.53 -20.44 16 14 C 0.18 9.39 4.76 71.24 0.34 9.73 16 15 C -0.54 -34.17 9.99 25.60 0.26 -33.92 16 16 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 17 C 0.01 0.73 5.47 84.65 0.46 1.19 16 18 N -0.94 -60.93 13.96 21.45 0.30 -60.64 16 19 Si 0.96 44.44 27.47 68.60 1.88 46.33 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16 23 C 0.09 2.21 4.15 88.07 0.37 2.58 16 24 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.04 1.04 8.05 -2.39 -0.02 1.02 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.41 7.18 -2.39 -0.02 1.39 16 30 H 0.07 1.22 6.57 -2.39 -0.02 1.21 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.04 1.48 7.26 -2.39 -0.02 1.46 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.14 6.66 -2.39 -0.02 1.13 16 36 H 0.07 1.71 7.38 -2.38 -0.02 1.69 16 37 H 0.08 1.55 7.97 -2.39 -0.02 1.53 16 38 H 0.08 2.15 7.41 -2.39 -0.02 2.14 16 39 H 0.04 1.39 6.61 -2.38 -0.02 1.37 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 41 H 0.00 0.18 7.58 -2.39 -0.02 0.16 16 42 H 0.01 0.50 7.19 -2.39 -0.02 0.49 16 43 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 44 H 0.06 1.63 6.20 -2.39 -0.01 1.61 16 45 H 0.04 0.76 7.54 -2.38 -0.02 0.74 16 Total: -1.00 -74.28 344.23 1.43 -72.85 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.87 Total: 12.73 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 4.88 Total: -19.22 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -3.19 Total: -80.45 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -3.02 Total: -32.23 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.33 kcal Total: -74.28 1.43 -72.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339097773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.209 kcal (2) G-P(sol) polarization free energy of solvation -74.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds