Wall clock time and date at job start Mon Mar 30 2020 04:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.67748 * 2 1 4 4 C 1.54890 * 110.75535 * 236.76834 * 2 1 3 5 5 C 1.54261 * 104.19755 * 203.74743 * 4 2 1 6 6 C 1.53873 * 106.60023 * 23.60632 * 5 4 2 7 7 C 1.52997 * 110.03177 * 240.66970 * 6 5 4 8 8 O 1.42901 * 109.47159 * 293.12074 * 7 6 5 9 9 N 1.46903 * 110.02927 * 119.28659 * 6 5 4 10 10 C 1.46903 * 111.00100 * 305.85331 * 9 6 5 11 11 C 1.46894 * 110.99859 * 181.89707 * 9 6 5 12 12 C 1.52998 * 109.47382 * 199.19857 * 11 9 6 13 13 O 1.42896 * 109.47081 * 65.00037 * 12 11 9 14 14 C 1.42901 * 114.00029 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47374 * 179.97438 * 14 13 12 16 16 H 1.08010 * 120.00016 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00465 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00375 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99729 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46860 * 90.00386 * 19 17 15 21 21 H 1.48501 * 109.47032 * 210.00295 * 19 17 15 22 22 H 1.48501 * 109.47059 * 330.00134 * 19 17 15 23 23 C 1.54261 * 106.63679 * 359.97438 * 6 5 4 24 24 H 1.08997 * 109.47512 * 181.77859 * 1 2 3 25 25 H 1.09002 * 109.46920 * 301.77962 * 1 2 3 26 26 H 1.09004 * 109.47214 * 61.77296 * 1 2 3 27 27 H 1.09002 * 110.48385 * 85.06350 * 4 2 1 28 28 H 1.09001 * 110.48635 * 322.42874 * 4 2 1 29 29 H 1.09008 * 110.02908 * 264.32164 * 5 4 2 30 30 H 1.08998 * 110.07536 * 142.91976 * 5 4 2 31 31 H 1.08997 * 109.47527 * 53.12595 * 7 6 5 32 32 H 1.09001 * 109.47054 * 173.12590 * 7 6 5 33 33 H 0.96703 * 113.99982 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.46568 * 296.04799 * 10 9 6 35 35 H 1.09000 * 109.47133 * 56.04297 * 10 9 6 36 36 H 1.08994 * 109.47240 * 176.04743 * 10 9 6 37 37 H 1.09009 * 109.47305 * 79.19744 * 11 9 6 38 38 H 1.08997 * 109.47320 * 319.20225 * 11 9 6 39 39 H 1.09007 * 109.47042 * 304.99840 * 12 11 9 40 40 H 1.09004 * 109.47228 * 185.00395 * 12 11 9 41 41 H 1.08997 * 109.46996 * 300.00334 * 14 13 12 42 42 H 1.09000 * 109.47495 * 60.00014 * 14 13 12 43 43 H 0.96994 * 119.99961 * 179.97438 * 18 17 15 44 44 H 1.09005 * 110.49007 * 95.09618 * 23 6 5 45 45 H 1.09004 * 110.48419 * 217.72889 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0789 -0.7937 -1.2115 5 6 3.4930 -1.2255 -0.7716 6 6 3.4931 -1.2283 0.7671 7 6 4.5320 -0.2358 1.2929 8 8 5.8427 -0.6962 0.9582 9 7 3.7880 -2.5775 1.2678 10 6 2.8665 -3.5660 0.6917 11 6 3.7490 -2.6144 2.7357 12 6 4.5043 -3.8477 3.2352 13 8 5.8874 -3.7287 2.8966 14 6 6.6867 -4.8352 3.3197 15 6 8.1191 -4.6052 2.9121 16 1 8.3919 -3.7042 2.3824 17 6 9.0814 -5.5452 3.2144 18 7 10.3316 -5.3442 2.8591 19 14 8.6095 -7.1037 4.1298 20 1 8.2402 -8.1591 3.1526 21 1 9.7607 -7.5660 4.9462 22 1 7.4528 -6.8249 5.0184 23 6 2.0795 -0.7976 1.2096 24 1 -0.3634 -1.0271 0.0319 25 1 -0.3633 0.5412 0.8736 26 1 -0.3634 0.4861 -0.9055 27 1 2.1319 -0.1553 -2.0934 28 1 1.4573 -1.6672 -1.4086 29 1 4.2326 -0.5165 -1.1438 30 1 3.7127 -2.2250 -1.1469 31 1 4.3632 0.7410 0.8398 32 1 4.4411 -0.1545 2.3761 33 1 6.5533 -0.1147 1.2616 34 1 1.8499 -3.3494 1.0199 35 1 2.9152 -3.5173 -0.3962 36 1 3.1506 -4.5644 1.0238 37 1 2.7128 -2.6626 3.0707 38 1 4.2182 -1.7150 3.1344 39 1 4.0910 -4.7411 2.7669 40 1 4.4003 -3.9238 4.3176 41 1 6.6280 -4.9322 4.4038 42 1 6.3187 -5.7488 2.8529 43 1 11.0086 -6.0053 3.0720 44 1 1.4577 -1.6715 1.4042 45 1 2.1335 -0.1623 2.0937 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339100847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:16 Heat of formation + Delta-G solvation = -89.490459 kcal Electronic energy + Delta-G solvation = -22420.277389 eV Core-core repulsion = 19245.070155 eV Total energy + Delta-G solvation = -3175.207234 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18470 -36.92606 -35.96662 -35.14488 -32.52251 -31.20495 -29.47448 -29.17535 -27.31968 -26.25568 -24.69998 -23.70612 -21.71503 -21.25065 -20.15716 -18.50065 -17.05242 -16.73643 -16.37817 -15.90450 -15.53902 -14.86053 -14.48777 -14.30596 -14.18213 -13.95905 -13.44596 -13.19509 -13.08786 -12.79115 -12.45748 -12.33498 -12.12802 -11.89097 -11.56858 -11.43870 -11.28742 -11.13858 -11.00467 -10.79965 -10.74179 -10.64728 -10.55385 -10.30813 -10.16567 -9.75238 -9.53531 -9.02161 -8.68390 -8.28968 -7.85943 -6.00379 -3.97384 3.31608 3.37857 3.40079 3.96235 4.27334 4.44986 4.52286 4.57620 4.77609 4.80104 5.07277 5.23744 5.25702 5.30934 5.32803 5.37242 5.40068 5.46575 5.50881 5.52454 5.62699 5.68046 5.69023 5.77199 5.79302 5.83416 5.92455 5.94482 5.97042 6.04093 6.13535 6.17527 6.24003 6.35142 6.43085 6.74239 7.13979 7.37297 7.41473 7.73743 8.08453 8.21986 8.84074 9.15385 9.60396 11.12999 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.032600 B = 0.004158 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.699761 B = 6732.189688 C = 7073.087806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.122 4.122 5 C -0.112 4.112 6 C 0.114 3.886 7 C 0.094 3.906 8 O -0.538 6.538 9 N -0.500 5.500 10 C 0.018 3.982 11 C 0.059 3.941 12 C 0.066 3.934 13 O -0.356 6.356 14 C 0.167 3.833 15 C -0.508 4.508 16 H 0.084 0.916 17 C 0.070 3.930 18 N -0.899 5.899 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.268 1.268 23 C -0.150 4.150 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.372 0.628 34 H 0.020 0.980 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.035 0.965 41 H -0.003 1.003 42 H -0.006 1.006 43 H 0.264 0.736 44 H 0.075 0.925 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.535 10.921 -4.381 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.093 0.907 4 C -0.160 4.160 5 C -0.149 4.149 6 C 0.024 3.976 7 C 0.015 3.985 8 O -0.341 6.341 9 N -0.222 5.222 10 C -0.130 4.130 11 C -0.068 4.068 12 C -0.013 4.013 13 O -0.274 6.274 14 C 0.092 3.908 15 C -0.546 4.546 16 H 0.102 0.898 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.189 4.189 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.217 0.783 34 H 0.038 0.962 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.015 0.985 42 H 0.012 0.988 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.110 10.361 -4.888 23.144 hybrid contribution -0.786 -0.506 1.253 1.563 sum -20.896 9.855 -3.635 23.387 Atomic orbital electron populations 1.21756 0.95160 1.01680 1.01414 1.22060 0.95167 0.99048 0.95063 0.90720 1.22489 0.96576 0.99528 0.97383 1.22220 0.96153 1.03072 0.93481 1.21729 0.91419 0.89054 0.95373 1.22158 0.84460 0.94416 0.97470 1.86756 1.14019 1.52015 1.81309 1.61984 1.50552 1.03334 1.06370 1.22539 0.93122 0.96620 1.00714 1.22160 0.96982 0.99829 0.87875 1.22274 0.86025 0.96311 0.96641 1.88073 1.15184 1.44122 1.80019 1.20557 0.91849 0.85313 0.93125 1.20919 0.89154 1.07575 1.36980 0.89798 1.24769 0.94760 0.97901 0.95689 1.69883 1.00895 1.35739 1.47283 0.86875 0.78397 0.84113 0.80474 1.20057 1.20948 1.19237 1.23150 0.97174 1.00357 0.98220 0.92768 0.92872 0.92734 0.91768 0.91776 0.91051 0.90187 0.94249 0.94259 0.78254 0.96171 0.91101 0.91332 0.94509 0.90173 0.94752 0.94701 0.98550 0.98834 0.92568 0.90676 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.27 37.16 0.34 -0.72 16 2 C -0.09 -0.83 3.49 -88.59 -0.31 -1.14 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -1.15 6.28 -25.07 -0.16 -1.30 16 5 C -0.11 -1.36 5.41 -25.62 -0.14 -1.50 16 6 C 0.11 1.47 0.38 -130.49 -0.05 1.42 16 7 C 0.09 1.23 5.14 37.16 0.19 1.43 16 8 O -0.54 -8.90 13.21 -35.23 -0.47 -9.36 16 9 N -0.50 -7.78 4.24 -225.88 -0.96 -8.74 16 10 C 0.02 0.24 8.72 60.07 0.52 0.77 16 11 C 0.06 0.92 4.58 -3.83 -0.02 0.90 16 12 C 0.07 1.24 6.12 37.16 0.23 1.46 16 13 O -0.36 -8.80 10.27 -35.23 -0.36 -9.16 16 14 C 0.17 4.47 4.76 36.00 0.17 4.65 16 15 C -0.51 -15.72 9.99 -34.44 -0.34 -16.07 16 16 H 0.08 2.85 8.06 -52.48 -0.42 2.43 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -28.52 13.96 55.43 0.77 -27.75 16 19 Si 0.87 22.15 27.47 -169.99 -4.67 17.48 16 20 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 23 C -0.15 -1.53 4.34 -25.04 -0.11 -1.64 16 24 H 0.05 0.41 8.12 -51.93 -0.42 -0.01 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 29 H 0.07 0.91 7.62 -51.92 -0.40 0.51 16 30 H 0.08 1.09 5.96 -51.93 -0.31 0.78 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.51 6.33 -51.93 -0.33 0.18 16 33 H 0.37 4.76 9.12 45.56 0.42 5.17 16 34 H 0.02 0.23 6.19 -51.93 -0.32 -0.09 16 35 H 0.07 0.90 5.86 -51.93 -0.30 0.60 16 36 H 0.07 0.98 6.77 -51.93 -0.35 0.63 16 37 H 0.04 0.48 7.53 -51.92 -0.39 0.09 16 38 H 0.08 1.27 5.72 -51.93 -0.30 0.97 16 39 H 0.03 0.62 6.76 -51.92 -0.35 0.27 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.00 -0.08 7.20 -51.93 -0.37 -0.46 16 42 H -0.01 -0.16 7.57 -51.93 -0.39 -0.55 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.07 0.79 5.61 -51.93 -0.29 0.50 16 45 H 0.06 0.64 7.81 -51.93 -0.41 0.23 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -34.62 341.29 -7.37 -41.99 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.06 Total: 0.13 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 0.24 Total: -9.73 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.18 Total: -36.49 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.83 Total: -18.52 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.62 -7.37 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339100847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.503 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds