Wall clock time and date at job start Mon Mar 30 2020 04:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.67748 * 2 1 4 4 C 1.54890 * 110.75535 * 236.76834 * 2 1 3 5 5 C 1.54261 * 104.19755 * 203.74743 * 4 2 1 6 6 C 1.53873 * 106.60023 * 23.60632 * 5 4 2 7 7 C 1.52997 * 110.03177 * 240.66970 * 6 5 4 8 8 O 1.42901 * 109.47159 * 293.12074 * 7 6 5 9 9 N 1.46903 * 110.02927 * 119.28659 * 6 5 4 10 10 C 1.46903 * 111.00100 * 305.85331 * 9 6 5 11 11 C 1.46894 * 110.99859 * 181.89707 * 9 6 5 12 12 C 1.52998 * 109.47382 * 199.19857 * 11 9 6 13 13 O 1.42896 * 109.47081 * 65.00037 * 12 11 9 14 14 C 1.42901 * 114.00029 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47374 * 179.97438 * 14 13 12 16 16 H 1.08010 * 120.00016 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00465 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00375 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99729 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46860 * 90.00386 * 19 17 15 21 21 H 1.48501 * 109.47032 * 210.00295 * 19 17 15 22 22 H 1.48501 * 109.47059 * 330.00134 * 19 17 15 23 23 C 1.54261 * 106.63679 * 359.97438 * 6 5 4 24 24 H 1.08997 * 109.47512 * 181.77859 * 1 2 3 25 25 H 1.09002 * 109.46920 * 301.77962 * 1 2 3 26 26 H 1.09004 * 109.47214 * 61.77296 * 1 2 3 27 27 H 1.09002 * 110.48385 * 85.06350 * 4 2 1 28 28 H 1.09001 * 110.48635 * 322.42874 * 4 2 1 29 29 H 1.09008 * 110.02908 * 264.32164 * 5 4 2 30 30 H 1.08998 * 110.07536 * 142.91976 * 5 4 2 31 31 H 1.08997 * 109.47527 * 53.12595 * 7 6 5 32 32 H 1.09001 * 109.47054 * 173.12590 * 7 6 5 33 33 H 0.96703 * 113.99982 * 180.02562 * 8 7 6 34 34 H 1.09001 * 109.46568 * 296.04799 * 10 9 6 35 35 H 1.09000 * 109.47133 * 56.04297 * 10 9 6 36 36 H 1.08994 * 109.47240 * 176.04743 * 10 9 6 37 37 H 1.09009 * 109.47305 * 79.19744 * 11 9 6 38 38 H 1.08997 * 109.47320 * 319.20225 * 11 9 6 39 39 H 1.09007 * 109.47042 * 304.99840 * 12 11 9 40 40 H 1.09004 * 109.47228 * 185.00395 * 12 11 9 41 41 H 1.08997 * 109.46996 * 300.00334 * 14 13 12 42 42 H 1.09000 * 109.47495 * 60.00014 * 14 13 12 43 43 H 0.96994 * 119.99961 * 179.97438 * 18 17 15 44 44 H 1.09005 * 110.49007 * 95.09618 * 23 6 5 45 45 H 1.09004 * 110.48419 * 217.72889 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0789 -0.7937 -1.2115 5 6 3.4930 -1.2255 -0.7716 6 6 3.4931 -1.2283 0.7671 7 6 4.5320 -0.2358 1.2929 8 8 5.8427 -0.6962 0.9582 9 7 3.7880 -2.5775 1.2678 10 6 2.8665 -3.5660 0.6917 11 6 3.7490 -2.6144 2.7357 12 6 4.5043 -3.8477 3.2352 13 8 5.8874 -3.7287 2.8966 14 6 6.6867 -4.8352 3.3197 15 6 8.1191 -4.6052 2.9121 16 1 8.3919 -3.7042 2.3824 17 6 9.0814 -5.5452 3.2144 18 7 10.3316 -5.3442 2.8591 19 14 8.6095 -7.1037 4.1298 20 1 8.2402 -8.1591 3.1526 21 1 9.7607 -7.5660 4.9462 22 1 7.4528 -6.8249 5.0184 23 6 2.0795 -0.7976 1.2096 24 1 -0.3634 -1.0271 0.0319 25 1 -0.3633 0.5412 0.8736 26 1 -0.3634 0.4861 -0.9055 27 1 2.1319 -0.1553 -2.0934 28 1 1.4573 -1.6672 -1.4086 29 1 4.2326 -0.5165 -1.1438 30 1 3.7127 -2.2250 -1.1469 31 1 4.3632 0.7410 0.8398 32 1 4.4411 -0.1545 2.3761 33 1 6.5533 -0.1147 1.2616 34 1 1.8499 -3.3494 1.0199 35 1 2.9152 -3.5173 -0.3962 36 1 3.1506 -4.5644 1.0238 37 1 2.7128 -2.6626 3.0707 38 1 4.2182 -1.7150 3.1344 39 1 4.0910 -4.7411 2.7669 40 1 4.4003 -3.9238 4.3176 41 1 6.6280 -4.9322 4.4038 42 1 6.3187 -5.7488 2.8529 43 1 11.0086 -6.0053 3.0720 44 1 1.4577 -1.6715 1.4042 45 1 2.1335 -0.1623 2.0937 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339100847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:15 Heat of formation + Delta-G solvation = -116.383823 kcal Electronic energy + Delta-G solvation = -22421.443573 eV Core-core repulsion = 19245.070155 eV Total energy + Delta-G solvation = -3176.373418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15818 -38.59669 -37.08713 -36.36084 -34.79013 -32.20758 -30.72818 -30.40993 -29.16337 -27.07757 -25.86278 -24.65573 -23.90313 -22.47781 -20.93457 -19.53329 -18.98211 -18.19893 -17.58484 -17.35255 -16.77096 -16.35519 -16.20822 -15.60447 -15.31745 -15.10116 -14.68780 -14.35256 -14.22127 -14.18819 -13.89886 -13.61711 -13.24407 -13.10269 -12.88232 -12.67746 -12.65763 -12.44163 -12.26087 -12.13115 -11.82959 -11.78723 -11.64920 -11.43812 -11.37487 -11.27866 -11.20591 -10.89568 -10.66105 -10.21944 -8.92335 -8.34229 -6.40788 1.32396 1.36073 1.46922 2.30909 2.91252 2.97762 3.19044 3.37966 3.68317 3.71979 4.02368 4.12775 4.20602 4.30563 4.34380 4.45562 4.47698 4.50583 4.54375 4.57541 4.59400 4.66331 4.68319 4.72914 4.76207 4.78186 4.88000 4.97251 5.00888 5.06052 5.07122 5.12828 5.21435 5.30048 5.36376 5.42073 5.48496 5.55865 6.00080 6.30360 6.36361 6.63680 6.88242 7.03394 7.23838 8.83289 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.032600 B = 0.004158 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.699761 B = 6732.189688 C = 7073.087806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.080 0.920 4 C -0.114 4.114 5 C -0.112 4.112 6 C 0.110 3.890 7 C 0.088 3.912 8 O -0.574 6.574 9 N -0.534 5.534 10 C 0.021 3.979 11 C 0.067 3.933 12 C 0.056 3.944 13 O -0.384 6.384 14 C 0.180 3.820 15 C -0.537 4.537 16 H 0.028 0.972 17 C 0.011 3.989 18 N -0.944 5.944 19 Si 0.956 3.044 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.247 1.247 23 C -0.141 4.141 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.381 0.619 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.008 0.992 42 H 0.001 0.999 43 H 0.272 0.728 44 H 0.077 0.923 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.378 10.334 -3.419 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.098 0.902 4 C -0.152 4.152 5 C -0.150 4.150 6 C 0.020 3.980 7 C 0.010 3.990 8 O -0.379 6.379 9 N -0.258 5.258 10 C -0.126 4.126 11 C -0.061 4.061 12 C -0.022 4.022 13 O -0.303 6.303 14 C 0.104 3.896 15 C -0.575 4.575 16 H 0.046 0.954 17 C -0.186 4.186 18 N -0.584 5.584 19 Si 0.778 3.222 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.170 1.170 23 C -0.180 4.180 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.229 0.771 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.025 0.975 42 H 0.019 0.981 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.976 9.805 -3.932 25.288 hybrid contribution 0.152 -0.213 0.875 0.913 sum -22.824 9.592 -3.057 24.946 Atomic orbital electron populations 1.21724 0.93788 1.01938 1.02208 1.22044 0.96189 0.98849 0.93690 0.90207 1.22445 0.94591 1.00012 0.98141 1.22192 0.97823 1.01606 0.93340 1.21850 0.92821 0.87767 0.95515 1.22388 0.83141 0.95647 0.97808 1.86711 1.15875 1.53482 1.81852 1.61886 1.52306 1.05126 1.06462 1.22497 0.93949 0.95460 1.00735 1.22070 0.98002 0.97800 0.88204 1.22656 0.83081 0.98473 0.97974 1.88034 1.18256 1.43508 1.80513 1.20250 0.89796 0.86161 0.93433 1.21144 0.92338 1.06302 1.37687 0.95373 1.25846 0.94285 1.02183 0.96331 1.70042 1.02425 1.37577 1.48333 0.85601 0.79075 0.78261 0.79312 1.18625 1.19634 1.17036 1.23074 0.95141 1.00705 0.99106 0.92768 0.92206 0.91885 0.90742 0.91298 0.92253 0.92241 0.91998 0.94136 0.77133 0.93814 0.91001 0.92714 0.91205 0.90940 0.94074 0.93033 0.97460 0.98101 0.91901 0.90492 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.27 71.98 0.67 -0.96 16 2 C -0.09 -1.32 3.49 -9.48 -0.03 -1.35 16 3 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.11 -1.93 6.28 31.67 0.20 -1.73 16 5 C -0.11 -2.69 5.41 31.32 0.17 -2.52 16 6 C 0.11 2.73 0.38 4.25 0.00 2.74 16 7 C 0.09 2.31 5.14 71.98 0.37 2.68 16 8 O -0.57 -19.87 13.21 -148.98 -1.97 -21.83 16 9 N -0.53 -16.33 4.24 -868.54 -3.68 -20.01 16 10 C 0.02 0.54 8.72 127.69 1.11 1.66 16 11 C 0.07 1.98 4.58 86.30 0.40 2.38 16 12 C 0.06 2.02 6.12 71.98 0.44 2.46 16 13 O -0.38 -19.26 10.27 -148.98 -1.53 -20.80 16 14 C 0.18 9.61 4.76 71.23 0.34 9.95 16 15 C -0.54 -34.40 9.99 25.60 0.26 -34.15 16 16 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 17 C 0.01 0.67 5.47 84.65 0.46 1.13 16 18 N -0.94 -61.39 13.96 21.45 0.30 -61.09 16 19 Si 0.96 45.18 27.47 68.60 1.88 47.06 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 22 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 23 C -0.14 -2.54 4.34 31.69 0.14 -2.40 16 24 H 0.05 0.65 8.12 -2.39 -0.02 0.63 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.11 8.05 -2.39 -0.02 1.09 16 29 H 0.06 1.53 7.62 -2.38 -0.02 1.51 16 30 H 0.06 1.66 5.96 -2.39 -0.01 1.64 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.03 6.33 -2.39 -0.02 1.02 16 33 H 0.38 10.53 9.12 -74.06 -0.68 9.86 16 34 H 0.04 0.90 6.19 -2.39 -0.01 0.89 16 35 H 0.07 1.80 5.86 -2.39 -0.01 1.79 16 36 H 0.05 1.53 6.77 -2.39 -0.02 1.51 16 37 H 0.07 1.60 7.53 -2.38 -0.02 1.58 16 38 H 0.07 2.24 5.72 -2.39 -0.01 2.23 16 39 H 0.04 1.44 6.76 -2.38 -0.02 1.42 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.01 0.39 7.20 -2.39 -0.02 0.38 16 42 H 0.00 0.07 7.57 -2.39 -0.02 0.05 16 43 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 44 H 0.08 1.37 5.61 -2.38 -0.01 1.36 16 45 H 0.07 1.22 7.81 -2.38 -0.02 1.20 16 Total: -1.00 -77.25 341.29 -0.25 -77.50 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.23 Total: 19.28 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 4.52 Total: -20.12 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -3.39 Total: -81.10 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -3.50 Total: -42.63 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -77.25 -0.25 -77.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339100847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.883 kcal (2) G-P(sol) polarization free energy of solvation -77.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds