Wall clock time and date at job start Mon Mar 30 2020 04:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.44009 * 2 1 4 4 C 1.54887 * 110.48687 * 122.54715 * 2 1 3 5 5 C 1.54883 * 102.75157 * 156.75123 * 4 2 1 6 6 C 1.54264 * 104.19730 * 322.05554 * 5 4 2 7 7 C 1.52996 * 110.03209 * 264.27775 * 6 5 4 8 8 O 1.42904 * 109.47107 * 292.83489 * 7 6 5 9 9 N 1.46905 * 110.03631 * 142.89023 * 6 5 4 10 10 C 1.46903 * 111.00090 * 302.77773 * 9 6 5 11 11 C 1.46892 * 111.00174 * 178.81739 * 9 6 5 12 12 C 1.52997 * 109.47324 * 198.98965 * 11 9 6 13 13 O 1.42908 * 109.47111 * 64.99899 * 12 11 9 14 14 C 1.42902 * 113.99750 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46779 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00039 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00140 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00091 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47036 * 270.00548 * 19 17 15 21 21 H 1.48500 * 109.46857 * 30.00379 * 19 17 15 22 22 H 1.48498 * 109.47121 * 150.00045 * 19 17 15 23 23 C 1.53873 * 106.59824 * 23.60957 * 6 5 4 24 24 H 1.09001 * 109.46959 * 298.90774 * 1 2 3 25 25 H 1.09000 * 109.46824 * 58.90959 * 1 2 3 26 26 H 1.08997 * 109.47280 * 178.91078 * 1 2 3 27 27 H 1.09000 * 110.76150 * 38.43212 * 4 2 1 28 28 H 1.09004 * 110.75556 * 275.06370 * 4 2 1 29 29 H 1.09006 * 110.49075 * 203.37785 * 5 4 2 30 30 H 1.09002 * 110.60303 * 80.79047 * 5 4 2 31 31 H 1.08993 * 109.47178 * 52.83982 * 7 6 5 32 32 H 1.09006 * 109.46919 * 172.83808 * 7 6 5 33 33 H 0.96698 * 114.00036 * 180.02562 * 8 7 6 34 34 H 1.08997 * 109.46518 * 303.33981 * 10 9 6 35 35 H 1.09002 * 109.47176 * 63.33644 * 10 9 6 36 36 H 1.09000 * 109.46847 * 183.34525 * 10 9 6 37 37 H 1.09000 * 109.47025 * 78.98816 * 11 9 6 38 38 H 1.09000 * 109.47597 * 318.98955 * 11 9 6 39 39 H 1.09009 * 109.47077 * 305.00336 * 12 11 9 40 40 H 1.09002 * 109.47856 * 184.99931 * 12 11 9 41 41 H 1.08997 * 109.47085 * 60.00600 * 14 13 12 42 42 H 1.08993 * 109.46958 * 299.99918 * 14 13 12 43 43 H 0.96998 * 120.00145 * 179.97438 * 18 17 15 44 44 H 1.09001 * 110.03419 * 119.28020 * 23 6 5 45 45 H 1.08994 * 110.03718 * 240.71882 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0213 0.0000 4 6 2.0721 -0.7806 1.2230 5 6 3.4919 -1.1942 0.7627 6 6 3.3202 -1.5376 -0.7314 7 6 3.1175 -3.0444 -0.9028 8 8 4.3188 -3.7304 -0.5444 9 7 4.5012 -1.0998 -1.4874 10 6 4.7352 0.3397 -1.3113 11 6 4.3722 -1.4421 -2.9101 12 6 5.7533 -1.4177 -3.5679 13 8 6.5679 -2.4475 -3.0037 14 6 7.8862 -2.5112 -3.5514 15 6 8.6523 -3.6266 -2.8879 16 1 8.1799 -4.2264 -2.1241 17 6 9.9568 -3.8806 -3.2552 18 7 10.6255 -4.8535 -2.6758 19 14 10.7743 -2.8427 -4.5758 20 1 10.5409 -3.4604 -5.9059 21 1 10.1976 -1.4743 -4.5575 22 1 12.2340 -2.7681 -4.3137 23 6 2.0728 -0.7784 -1.2164 24 1 -0.3633 0.4968 0.8996 25 1 -0.3633 0.5307 -0.8801 26 1 -0.3634 -1.0274 -0.0195 27 1 1.4594 -1.6597 1.4229 28 1 2.1230 -0.1363 2.1008 29 1 3.8338 -2.0676 1.3181 30 1 4.1912 -0.3672 0.8861 31 1 2.3033 -3.3770 -0.2591 32 1 2.8711 -3.2619 -1.9421 33 1 4.2629 -4.6920 -0.6295 34 1 3.8446 0.8918 -1.6112 35 1 4.9555 0.5465 -0.2640 36 1 5.5791 0.6487 -1.9281 37 1 3.7232 -0.7168 -3.4008 38 1 3.9414 -2.4387 -3.0065 39 1 6.2212 -0.4485 -3.3946 40 1 5.6483 -1.5840 -4.6400 41 1 8.3981 -1.5648 -3.3774 42 1 7.8257 -2.7000 -4.6231 43 1 11.5431 -5.0325 -2.9345 44 1 2.3437 -0.0851 -2.0126 45 1 1.3221 -1.4832 -1.5738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339100849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:23 Heat of formation + Delta-G solvation = -88.476376 kcal Electronic energy + Delta-G solvation = -22421.192830 eV Core-core repulsion = 19246.029569 eV Total energy + Delta-G solvation = -3175.163260 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.20267 -36.93079 -35.98136 -35.15885 -32.52015 -31.21112 -29.27780 -29.24206 -27.35716 -26.35410 -24.68964 -23.71758 -21.71094 -21.21250 -20.09605 -18.51860 -16.94795 -16.86071 -16.59663 -15.71796 -15.40554 -14.99435 -14.62472 -14.33115 -14.08206 -13.86553 -13.54873 -13.28611 -12.96239 -12.72244 -12.39188 -12.30830 -12.15338 -11.93275 -11.54091 -11.43140 -11.32728 -11.18239 -10.95476 -10.82805 -10.77967 -10.63422 -10.55030 -10.23210 -10.15160 -9.75111 -9.55383 -9.01883 -8.68307 -8.28665 -7.86019 -6.00187 -3.97172 3.31283 3.37936 3.40628 3.95531 4.27290 4.45155 4.52215 4.59688 4.79969 4.84458 5.08031 5.11749 5.30077 5.31124 5.34434 5.37539 5.42193 5.44385 5.48009 5.51886 5.60588 5.66348 5.70824 5.78528 5.82564 5.85114 5.90448 5.93760 5.96672 6.06034 6.10886 6.14811 6.29805 6.38091 6.44586 6.74032 7.14520 7.37487 7.41437 7.73968 8.07344 8.22242 8.84304 9.15738 9.60599 11.13198 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.033137 B = 0.004143 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.765912 B = 6756.689619 C = 7095.660234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.121 4.121 5 C -0.112 4.112 6 C 0.115 3.885 7 C 0.093 3.907 8 O -0.537 6.537 9 N -0.500 5.500 10 C 0.018 3.982 11 C 0.058 3.942 12 C 0.066 3.934 13 O -0.355 6.355 14 C 0.167 3.833 15 C -0.508 4.508 16 H 0.084 0.916 17 C 0.070 3.930 18 N -0.899 5.899 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.267 1.267 22 H -0.283 1.283 23 C -0.150 4.150 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.372 0.628 34 H 0.022 0.978 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.036 0.964 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.035 0.965 41 H -0.001 1.001 42 H -0.008 1.008 43 H 0.264 0.736 44 H 0.069 0.931 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.077 10.103 3.781 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.090 0.910 4 C -0.159 4.159 5 C -0.149 4.149 6 C 0.024 3.976 7 C 0.014 3.986 8 O -0.340 6.340 9 N -0.223 5.223 10 C -0.130 4.130 11 C -0.070 4.070 12 C -0.012 4.012 13 O -0.273 6.273 14 C 0.091 3.909 15 C -0.546 4.546 16 H 0.102 0.898 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.701 3.299 20 H -0.201 1.201 21 H -0.192 1.192 22 H -0.209 1.209 23 C -0.189 4.189 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.217 0.783 34 H 0.040 0.960 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.016 0.984 42 H 0.010 0.990 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.318 10.238 4.218 23.139 hybrid contribution -0.255 0.586 -1.514 1.643 sum -20.573 10.824 2.704 23.404 Atomic orbital electron populations 1.21802 0.95169 1.01682 1.01382 1.21919 0.95187 0.99159 0.95011 0.90988 1.22611 0.96602 0.99565 0.97146 1.22465 0.96213 1.02435 0.93814 1.21737 0.87969 0.93164 0.94698 1.22156 0.87332 0.91440 0.97662 1.86767 1.34738 1.22424 1.90119 1.61945 1.36568 1.14796 1.08951 1.22536 0.99873 0.88085 1.02514 1.22173 0.96038 1.00895 0.87867 1.22281 0.91580 0.92393 0.94986 1.88081 1.24790 1.51410 1.63055 1.20558 0.80623 0.96812 0.92865 1.20919 0.96652 1.14694 1.22354 0.89791 1.24768 0.96750 0.95191 0.96414 1.69882 1.10897 1.30391 1.42630 0.86874 0.79004 0.81462 0.82526 1.20117 1.19205 1.20920 1.22933 0.98105 0.99504 0.98354 0.92752 0.92954 0.92682 0.91590 0.91618 0.90418 0.90543 0.94205 0.94244 0.78261 0.96001 0.91153 0.91397 0.94577 0.90038 0.94757 0.94702 0.98374 0.99021 0.92571 0.91285 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.13 37.16 0.34 -0.73 16 2 C -0.09 -0.84 3.45 -88.96 -0.31 -1.15 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.12 -1.14 6.33 -24.74 -0.16 -1.30 16 5 C -0.11 -1.37 5.78 -25.08 -0.14 -1.52 16 6 C 0.11 1.48 0.38 -130.48 -0.05 1.43 16 7 C 0.09 1.21 5.07 37.16 0.19 1.40 16 8 O -0.54 -8.83 12.96 -35.23 -0.46 -9.28 16 9 N -0.50 -7.80 4.27 -225.88 -0.96 -8.76 16 10 C 0.02 0.24 8.78 60.07 0.53 0.77 16 11 C 0.06 0.90 4.61 -3.83 -0.02 0.88 16 12 C 0.07 1.24 6.12 37.16 0.23 1.47 16 13 O -0.35 -8.79 10.27 -35.23 -0.36 -9.15 16 14 C 0.17 4.47 4.76 36.01 0.17 4.64 16 15 C -0.51 -15.73 9.99 -34.44 -0.34 -16.07 16 16 H 0.08 2.85 8.06 -52.49 -0.42 2.43 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -28.54 13.96 55.43 0.77 -27.76 16 19 Si 0.87 22.16 27.47 -169.99 -4.67 17.49 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 23 C -0.15 -1.54 4.65 -25.61 -0.12 -1.66 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.40 8.11 -51.93 -0.42 -0.02 16 27 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.07 7.51 -51.93 -0.39 0.68 16 30 H 0.08 0.98 5.58 -51.93 -0.29 0.69 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.50 6.35 -51.93 -0.33 0.17 16 33 H 0.37 4.70 9.12 45.56 0.42 5.11 16 34 H 0.02 0.25 6.23 -51.93 -0.32 -0.07 16 35 H 0.07 0.91 5.97 -51.93 -0.31 0.60 16 36 H 0.07 0.96 6.57 -51.93 -0.34 0.62 16 37 H 0.04 0.47 7.07 -51.93 -0.37 0.10 16 38 H 0.08 1.29 5.59 -51.93 -0.29 1.00 16 39 H 0.03 0.63 6.64 -51.92 -0.34 0.28 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.00 -0.04 7.20 -51.93 -0.37 -0.41 16 42 H -0.01 -0.20 7.57 -51.93 -0.39 -0.59 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.07 0.74 5.26 -51.93 -0.27 0.46 16 45 H 0.07 0.64 7.35 -51.93 -0.38 0.26 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -34.65 339.61 -7.30 -41.95 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.96 Total: 0.22 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 0.22 Total: -9.81 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.19 Total: -36.53 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.82 Total: -18.44 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.65 -7.30 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339100849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.529 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds