Wall clock time and date at job start Mon Mar 30 2020 04:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.44009 * 2 1 4 4 C 1.54887 * 110.48687 * 122.54715 * 2 1 3 5 5 C 1.54883 * 102.75157 * 156.75123 * 4 2 1 6 6 C 1.54264 * 104.19730 * 322.05554 * 5 4 2 7 7 C 1.52996 * 110.03209 * 264.27775 * 6 5 4 8 8 O 1.42904 * 109.47107 * 292.83489 * 7 6 5 9 9 N 1.46905 * 110.03631 * 142.89023 * 6 5 4 10 10 C 1.46903 * 111.00090 * 302.77773 * 9 6 5 11 11 C 1.46892 * 111.00174 * 178.81739 * 9 6 5 12 12 C 1.52997 * 109.47324 * 198.98965 * 11 9 6 13 13 O 1.42908 * 109.47111 * 64.99899 * 12 11 9 14 14 C 1.42902 * 113.99750 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46779 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00039 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00140 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00091 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47036 * 270.00548 * 19 17 15 21 21 H 1.48500 * 109.46857 * 30.00379 * 19 17 15 22 22 H 1.48498 * 109.47121 * 150.00045 * 19 17 15 23 23 C 1.53873 * 106.59824 * 23.60957 * 6 5 4 24 24 H 1.09001 * 109.46959 * 298.90774 * 1 2 3 25 25 H 1.09000 * 109.46824 * 58.90959 * 1 2 3 26 26 H 1.08997 * 109.47280 * 178.91078 * 1 2 3 27 27 H 1.09000 * 110.76150 * 38.43212 * 4 2 1 28 28 H 1.09004 * 110.75556 * 275.06370 * 4 2 1 29 29 H 1.09006 * 110.49075 * 203.37785 * 5 4 2 30 30 H 1.09002 * 110.60303 * 80.79047 * 5 4 2 31 31 H 1.08993 * 109.47178 * 52.83982 * 7 6 5 32 32 H 1.09006 * 109.46919 * 172.83808 * 7 6 5 33 33 H 0.96698 * 114.00036 * 180.02562 * 8 7 6 34 34 H 1.08997 * 109.46518 * 303.33981 * 10 9 6 35 35 H 1.09002 * 109.47176 * 63.33644 * 10 9 6 36 36 H 1.09000 * 109.46847 * 183.34525 * 10 9 6 37 37 H 1.09000 * 109.47025 * 78.98816 * 11 9 6 38 38 H 1.09000 * 109.47597 * 318.98955 * 11 9 6 39 39 H 1.09009 * 109.47077 * 305.00336 * 12 11 9 40 40 H 1.09002 * 109.47856 * 184.99931 * 12 11 9 41 41 H 1.08997 * 109.47085 * 60.00600 * 14 13 12 42 42 H 1.08993 * 109.46958 * 299.99918 * 14 13 12 43 43 H 0.96998 * 120.00145 * 179.97438 * 18 17 15 44 44 H 1.09001 * 110.03419 * 119.28020 * 23 6 5 45 45 H 1.08994 * 110.03718 * 240.71882 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0213 0.0000 4 6 2.0721 -0.7806 1.2230 5 6 3.4919 -1.1942 0.7627 6 6 3.3202 -1.5376 -0.7314 7 6 3.1175 -3.0444 -0.9028 8 8 4.3188 -3.7304 -0.5444 9 7 4.5012 -1.0998 -1.4874 10 6 4.7352 0.3397 -1.3113 11 6 4.3722 -1.4421 -2.9101 12 6 5.7533 -1.4177 -3.5679 13 8 6.5679 -2.4475 -3.0037 14 6 7.8862 -2.5112 -3.5514 15 6 8.6523 -3.6266 -2.8879 16 1 8.1799 -4.2264 -2.1241 17 6 9.9568 -3.8806 -3.2552 18 7 10.6255 -4.8535 -2.6758 19 14 10.7743 -2.8427 -4.5758 20 1 10.5409 -3.4604 -5.9059 21 1 10.1976 -1.4743 -4.5575 22 1 12.2340 -2.7681 -4.3137 23 6 2.0728 -0.7784 -1.2164 24 1 -0.3633 0.4968 0.8996 25 1 -0.3633 0.5307 -0.8801 26 1 -0.3634 -1.0274 -0.0195 27 1 1.4594 -1.6597 1.4229 28 1 2.1230 -0.1363 2.1008 29 1 3.8338 -2.0676 1.3181 30 1 4.1912 -0.3672 0.8861 31 1 2.3033 -3.3770 -0.2591 32 1 2.8711 -3.2619 -1.9421 33 1 4.2629 -4.6920 -0.6295 34 1 3.8446 0.8918 -1.6112 35 1 4.9555 0.5465 -0.2640 36 1 5.5791 0.6487 -1.9281 37 1 3.7232 -0.7168 -3.4008 38 1 3.9414 -2.4387 -3.0065 39 1 6.2212 -0.4485 -3.3946 40 1 5.6483 -1.5840 -4.6400 41 1 8.3981 -1.5648 -3.3774 42 1 7.8257 -2.7000 -4.6231 43 1 11.5431 -5.0325 -2.9345 44 1 2.3437 -0.0851 -2.0126 45 1 1.3221 -1.4832 -1.5738 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339100849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:22 Heat of formation + Delta-G solvation = -115.433546 kcal Electronic energy + Delta-G solvation = -22422.361780 eV Core-core repulsion = 19246.029569 eV Total energy + Delta-G solvation = -3176.332211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17820 -38.59641 -37.09435 -36.38208 -34.79014 -32.20513 -30.77941 -30.21678 -29.21690 -27.18804 -25.84766 -24.67287 -23.90021 -22.44844 -20.86633 -19.55384 -18.99917 -18.06486 -17.81182 -17.40513 -16.65872 -16.41175 -16.02524 -15.79784 -15.32140 -15.04920 -14.68865 -14.44904 -14.35237 -14.06703 -13.67622 -13.65015 -13.25569 -13.01634 -12.91360 -12.73104 -12.62271 -12.41521 -12.34127 -12.19439 -11.84618 -11.69579 -11.64685 -11.51028 -11.35390 -11.22440 -11.18124 -10.89359 -10.67490 -10.21620 -8.92679 -8.34130 -6.40696 1.32267 1.36205 1.47228 2.31047 2.91353 2.97822 3.18771 3.37620 3.68978 3.73230 4.06598 4.13639 4.19208 4.25715 4.34179 4.44794 4.47140 4.50245 4.53473 4.56512 4.62388 4.66851 4.68663 4.71381 4.72563 4.76292 4.94709 4.97042 5.02399 5.05362 5.09136 5.10183 5.20254 5.28130 5.37469 5.46722 5.48663 5.55838 6.00226 6.30325 6.36285 6.63840 6.88471 7.03549 7.23955 8.83411 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.033137 B = 0.004143 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.765912 B = 6756.689619 C = 7095.660234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.114 4.114 6 C 0.110 3.890 7 C 0.088 3.912 8 O -0.573 6.573 9 N -0.535 5.535 10 C 0.021 3.979 11 C 0.065 3.935 12 C 0.056 3.944 13 O -0.384 6.384 14 C 0.180 3.820 15 C -0.537 4.537 16 H 0.028 0.972 17 C 0.011 3.989 18 N -0.944 5.944 19 Si 0.957 3.043 20 H -0.258 1.258 21 H -0.250 1.250 22 H -0.273 1.273 23 C -0.141 4.141 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.382 0.618 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.002 0.998 42 H 0.007 0.993 43 H 0.272 0.728 44 H 0.069 0.931 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.519 12.329 2.260 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.151 4.151 6 C 0.021 3.979 7 C 0.010 3.990 8 O -0.379 6.379 9 N -0.258 5.258 10 C -0.127 4.127 11 C -0.062 4.062 12 C -0.022 4.022 13 O -0.303 6.303 14 C 0.104 3.896 15 C -0.575 4.575 16 H 0.046 0.954 17 C -0.187 4.187 18 N -0.584 5.584 19 Si 0.778 3.222 20 H -0.182 1.182 21 H -0.173 1.173 22 H -0.198 1.198 23 C -0.180 4.180 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.229 0.771 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.020 0.980 42 H 0.024 0.976 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.798 12.463 2.706 25.255 hybrid contribution 0.151 -0.187 -0.932 0.963 sum -21.646 12.277 1.773 24.949 Atomic orbital electron populations 1.21771 0.93704 1.02097 1.02121 1.21892 0.96291 0.98805 0.93759 0.90795 1.22568 0.94531 1.00096 0.97855 1.22441 0.97974 1.01061 0.93665 1.21858 0.88375 0.93158 0.94554 1.22379 0.86762 0.91615 0.98269 1.86724 1.37041 1.23642 1.90478 1.61856 1.38725 1.16098 1.09159 1.22495 1.00463 0.87410 1.02290 1.22082 0.94320 1.01517 0.88289 1.22665 0.92315 0.90977 0.96222 1.88043 1.24293 1.53849 1.64072 1.20249 0.81509 0.94985 0.92900 1.21143 0.97994 1.16110 1.22226 0.95390 1.25848 0.97082 0.96532 0.99193 1.70042 1.11674 1.32231 1.44438 0.85595 0.77877 0.79871 0.78877 1.18207 1.17322 1.19767 1.22853 0.96888 0.99455 0.98846 0.91939 0.92354 0.92440 0.90971 0.90606 0.92808 0.91483 0.92026 0.93927 0.77122 0.93635 0.91323 0.92516 0.91265 0.90802 0.94132 0.92954 0.98008 0.97565 0.91901 0.91216 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.13 71.98 0.66 -0.97 16 2 C -0.09 -1.34 3.45 -9.72 -0.03 -1.37 16 3 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.11 -1.92 6.33 31.88 0.20 -1.71 16 5 C -0.11 -2.77 5.78 31.67 0.18 -2.59 16 6 C 0.11 2.74 0.38 4.25 0.00 2.74 16 7 C 0.09 2.27 5.07 71.98 0.37 2.64 16 8 O -0.57 -19.75 12.96 -148.98 -1.93 -21.68 16 9 N -0.53 -16.38 4.27 -868.54 -3.71 -20.09 16 10 C 0.02 0.54 8.78 127.69 1.12 1.66 16 11 C 0.07 1.94 4.61 86.30 0.40 2.34 16 12 C 0.06 2.03 6.12 71.98 0.44 2.47 16 13 O -0.38 -19.25 10.27 -148.98 -1.53 -20.78 16 14 C 0.18 9.62 4.76 71.24 0.34 9.96 16 15 C -0.54 -34.43 9.99 25.60 0.26 -34.17 16 16 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 17 C 0.01 0.67 5.47 84.65 0.46 1.13 16 18 N -0.94 -61.42 13.96 21.45 0.30 -61.12 16 19 Si 0.96 45.19 27.47 68.60 1.88 47.07 16 20 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 C -0.14 -2.55 4.65 31.32 0.15 -2.40 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.65 8.11 -2.39 -0.02 0.64 16 27 H 0.07 1.15 8.06 -2.39 -0.02 1.13 16 28 H 0.08 1.14 8.14 -2.38 -0.02 1.13 16 29 H 0.05 1.54 7.51 -2.38 -0.02 1.52 16 30 H 0.07 1.73 5.58 -2.39 -0.01 1.72 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.06 6.35 -2.38 -0.02 1.05 16 33 H 0.38 10.42 9.12 -74.06 -0.68 9.75 16 34 H 0.05 0.94 6.23 -2.39 -0.01 0.92 16 35 H 0.07 1.76 5.97 -2.39 -0.01 1.75 16 36 H 0.06 1.56 6.57 -2.39 -0.02 1.54 16 37 H 0.07 1.59 7.07 -2.39 -0.02 1.57 16 38 H 0.07 2.29 5.59 -2.39 -0.01 2.28 16 39 H 0.04 1.42 6.64 -2.38 -0.02 1.41 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.00 0.12 7.20 -2.39 -0.02 0.10 16 42 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 43 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 44 H 0.07 1.26 5.26 -2.39 -0.01 1.25 16 45 H 0.08 1.25 7.35 -2.39 -0.02 1.23 16 Total: -1.00 -77.38 339.61 -0.21 -77.59 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.24 Total: 19.29 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 4.54 Total: -20.29 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -3.41 Total: -81.21 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -3.46 Total: -42.46 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -77.38 -0.21 -77.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339100849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.843 kcal (2) G-P(sol) polarization free energy of solvation -77.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds