Wall clock time and date at job start Mon Mar 30 2020 05:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46642 * 2 1 4 4 C 1.52992 * 109.47145 * 119.99476 * 2 1 3 5 5 O 1.42902 * 109.47482 * 184.44443 * 4 2 1 6 6 N 1.46896 * 109.47022 * 239.99674 * 2 1 3 7 7 C 1.46901 * 110.99771 * 162.86301 * 6 2 1 8 8 C 1.53001 * 109.47148 * 284.60008 * 7 6 2 9 9 O 1.42902 * 109.47047 * 68.46226 * 8 7 6 10 10 C 1.42897 * 113.99938 * 184.81019 * 9 8 7 11 11 C 1.50699 * 109.46971 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00273 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99981 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99937 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00199 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46999 * 89.99681 * 15 13 11 17 17 H 1.48499 * 109.47014 * 210.00368 * 15 13 11 18 18 H 1.48501 * 109.46888 * 330.00349 * 15 13 11 19 19 C 1.46898 * 110.99995 * 286.81814 * 6 2 1 20 20 C 1.54886 * 110.48731 * 269.69590 * 19 6 2 21 21 C 1.54887 * 102.74675 * 203.38183 * 20 19 6 22 22 C 1.54265 * 104.19827 * 37.94239 * 21 20 19 23 23 C 1.53873 * 106.59662 * 336.38965 * 22 21 20 24 24 H 1.09002 * 109.47385 * 175.36418 * 1 2 3 25 25 H 1.09006 * 109.47360 * 295.35919 * 1 2 3 26 26 H 1.09000 * 109.47329 * 55.35628 * 1 2 3 27 27 H 1.09007 * 109.47635 * 304.44433 * 4 2 1 28 28 H 1.09002 * 109.47329 * 64.44514 * 4 2 1 29 29 H 0.96690 * 114.00821 * 180.02562 * 5 4 2 30 30 H 1.08997 * 109.46879 * 44.60505 * 7 6 2 31 31 H 1.09000 * 109.46827 * 164.60135 * 7 6 2 32 32 H 1.09005 * 109.46492 * 188.45515 * 8 7 6 33 33 H 1.08997 * 109.47463 * 308.45988 * 8 7 6 34 34 H 1.08994 * 109.47289 * 299.99848 * 10 9 8 35 35 H 1.09008 * 109.46891 * 59.99950 * 10 9 8 36 36 H 0.96996 * 119.99975 * 180.02562 * 14 13 11 37 37 H 1.08999 * 110.53687 * 32.30849 * 19 6 2 38 38 H 1.08995 * 110.75651 * 85.06662 * 20 19 6 39 39 H 1.09005 * 110.75785 * 321.69371 * 20 19 6 40 40 H 1.09000 * 110.48470 * 279.26020 * 21 20 19 41 41 H 1.09001 * 110.49062 * 156.62266 * 21 20 19 42 42 H 1.08992 * 110.03432 * 95.67802 * 22 21 20 43 43 H 1.09004 * 110.02812 * 217.05830 * 22 21 20 44 44 H 1.08997 * 110.03322 * 119.28678 * 23 22 21 45 45 H 1.09006 * 110.02892 * 240.66909 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 8 3.4652 -0.6314 1.3027 6 7 2.0196 -0.6925 -1.1994 7 6 3.4307 -0.3723 -1.4529 8 6 3.5371 1.0395 -2.0328 9 8 3.1803 1.9941 -1.0310 10 6 3.1414 3.3430 -1.5010 11 6 2.7560 4.2588 -0.3680 12 1 2.5600 3.8515 0.6128 13 6 2.6527 5.6167 -0.5838 14 7 2.8900 6.1126 -1.7785 15 14 2.1743 6.7519 0.8205 16 1 3.3982 7.2085 1.5268 17 1 1.4465 7.9281 0.2802 18 1 1.2980 6.0213 1.7710 19 6 1.8210 -2.1437 -1.0873 20 6 3.0603 -2.8123 -0.4421 21 6 2.9613 -4.2736 -0.9458 22 6 2.4555 -4.1401 -2.3971 23 6 1.7304 -2.7859 -2.4870 24 1 -0.3634 -1.0243 -0.0831 25 1 -0.3634 0.4402 0.9287 26 1 -0.3634 0.5842 -0.8455 27 1 1.6131 -0.2553 2.1375 28 1 1.7432 -1.7692 1.2104 29 1 3.8584 -1.0682 2.0705 30 1 3.9887 -0.4242 -0.5180 31 1 3.8439 -1.0888 -2.1629 32 1 4.5608 1.2217 -2.3600 33 1 2.8614 1.1351 -2.8828 34 1 4.1244 3.6248 -1.8782 35 1 2.4069 3.4275 -2.3020 36 1 2.8176 7.0678 -1.9302 37 1 0.9242 -2.3633 -0.5080 38 1 2.9978 -2.7735 0.6454 39 1 3.9793 -2.3437 -0.7943 40 1 2.2486 -4.8372 -0.3437 41 1 3.9408 -4.7513 -0.9257 42 1 3.2972 -4.1597 -3.0892 43 1 1.7640 -4.9507 -2.6274 44 1 2.2203 -2.1482 -3.2228 45 1 0.6867 -2.9387 -2.7617 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339106955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:02 Heat of formation + Delta-G solvation = -93.963498 kcal Electronic energy + Delta-G solvation = -22843.450286 eV Core-core repulsion = 19668.049086 eV Total energy + Delta-G solvation = -3175.401200 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.92321 -36.80920 -36.41084 -34.67800 -32.68869 -31.48370 -28.96484 -28.69867 -26.93889 -25.84948 -25.57507 -22.36936 -21.94821 -20.70519 -20.27521 -18.62142 -17.16750 -16.68154 -16.36653 -16.10873 -15.32703 -14.63534 -14.53199 -14.34613 -14.12203 -13.59207 -13.40852 -13.06804 -12.88472 -12.55425 -12.25421 -11.96654 -11.69082 -11.44046 -11.25404 -11.20254 -11.13002 -10.96392 -10.93117 -10.79001 -10.71043 -10.57808 -10.42877 -10.27306 -10.06551 -9.79354 -9.58185 -8.97960 -8.67402 -8.01574 -7.72540 -6.04531 -4.05498 3.33243 3.38147 3.43087 4.11290 4.40220 4.46881 4.66829 4.72638 4.90888 5.07897 5.27925 5.31931 5.35723 5.47067 5.50053 5.50438 5.60745 5.64184 5.65588 5.68976 5.85179 5.87580 5.88946 5.99127 6.06996 6.08641 6.22032 6.25565 6.29836 6.30269 6.38069 6.39337 6.55861 6.74333 6.95301 7.25439 7.53256 7.59724 7.64517 7.83384 7.86602 8.25256 8.70572 9.09488 9.59098 11.07112 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.028902 B = 0.004605 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.549594 B = 6078.939395 C = 6377.377419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.062 3.938 3 H 0.138 0.862 4 C 0.045 3.955 5 O -0.551 6.551 6 N -0.514 5.514 7 C 0.047 3.953 8 C 0.068 3.932 9 O -0.387 6.387 10 C 0.194 3.806 11 C -0.509 4.509 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.905 3.095 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.077 3.923 20 C -0.155 4.155 21 C -0.125 4.125 22 C -0.124 4.124 23 C -0.115 4.115 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.362 0.638 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.001 0.999 35 H 0.004 0.996 36 H 0.263 0.737 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 -20.015 2.598 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.046 4.046 3 H 0.156 0.844 4 C -0.034 4.034 5 O -0.356 6.356 6 N -0.236 5.236 7 C -0.080 4.080 8 C -0.010 4.010 9 O -0.307 6.307 10 C 0.120 3.880 11 C -0.548 4.548 12 H 0.083 0.917 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.732 3.268 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.032 4.032 20 C -0.194 4.194 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.153 4.153 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.208 0.792 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.019 0.981 35 H 0.022 0.978 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.043 -19.363 1.707 19.545 hybrid contribution 0.305 0.119 1.516 1.551 sum -1.738 -19.244 3.223 19.589 Atomic orbital electron populations 1.21705 0.94409 1.00946 1.02210 1.22293 0.94695 1.02291 0.85342 0.84425 1.23181 0.81540 0.98923 0.99713 1.86662 1.19901 1.80437 1.48631 1.62198 1.19183 1.05735 1.36529 1.22480 0.89116 0.94755 1.01662 1.22289 0.97488 0.89181 0.92085 1.87748 1.89708 1.17835 1.35375 1.20155 0.95284 0.76982 0.95560 1.21051 1.46289 0.90936 0.96489 0.91731 1.24934 0.95549 0.97938 0.96072 1.69968 1.49668 1.13108 1.21103 0.86388 0.78594 0.79936 0.81865 1.20573 1.21158 1.19702 1.22581 0.97117 0.87986 0.95557 1.23468 1.00415 0.95089 1.00428 1.22327 1.00447 0.97329 0.96244 1.22126 0.99738 0.97500 0.96845 1.22137 1.00301 0.95247 0.97610 0.93650 0.92609 0.91284 0.94220 0.93909 0.79194 0.89781 0.91409 0.94795 0.94208 0.98074 0.97838 0.92778 0.90472 0.91533 0.90013 0.92242 0.92203 0.92141 0.92326 0.91064 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.32 37.16 0.35 -1.60 16 2 C 0.06 1.01 2.60 -67.72 -0.18 0.83 16 3 H 0.14 2.90 4.92 -51.93 -0.26 2.64 16 4 C 0.05 0.62 5.49 37.15 0.20 0.82 16 5 O -0.55 -7.71 9.06 -35.23 -0.32 -8.03 16 6 N -0.51 -7.93 4.23 -216.76 -0.92 -8.84 16 7 C 0.05 0.77 3.73 -3.82 -0.01 0.75 16 8 C 0.07 1.34 6.23 37.16 0.23 1.57 16 9 O -0.39 -9.38 7.41 -35.23 -0.26 -9.64 16 10 C 0.19 5.43 5.69 36.01 0.20 5.64 16 11 C -0.51 -15.09 9.43 -34.44 -0.32 -15.42 16 12 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 15 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 C 0.08 0.95 2.08 -66.06 -0.14 0.81 16 20 C -0.16 -1.74 4.33 -24.74 -0.11 -1.85 16 21 C -0.13 -1.19 6.83 -25.07 -0.17 -1.36 16 22 C -0.12 -1.19 6.80 -25.61 -0.17 -1.37 16 23 C -0.11 -1.31 6.26 -25.61 -0.16 -1.47 16 24 H 0.04 0.56 6.59 -51.93 -0.34 0.22 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.04 0.53 8.14 -51.92 -0.42 0.10 16 28 H 0.04 0.51 4.83 -51.93 -0.25 0.26 16 29 H 0.36 3.45 9.12 45.56 0.42 3.86 16 30 H 0.08 1.45 4.34 -51.93 -0.23 1.22 16 31 H 0.07 0.98 6.40 -51.93 -0.33 0.65 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 35 H 0.00 0.11 8.14 -51.92 -0.42 -0.31 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.08 0.95 5.68 -51.93 -0.29 0.65 16 38 H 0.07 0.72 5.28 -51.93 -0.27 0.45 16 39 H 0.08 1.02 5.35 -51.93 -0.28 0.74 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.90 7.39 -51.93 -0.38 0.52 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 332.83 15.07 5.02 5.02 Total: -1.00 -31.44 332.83 -7.98 -39.42 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.84 Total: 2.69 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -0.38 Total: -11.10 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.18 Total: -35.41 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.58 Total: -17.67 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.44 -7.98 -39.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339106955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.540 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds