Wall clock time and date at job start Mon Mar 30 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46642 * 2 1 4 4 C 1.52992 * 109.47145 * 119.99476 * 2 1 3 5 5 O 1.42902 * 109.47482 * 184.44443 * 4 2 1 6 6 N 1.46896 * 109.47022 * 239.99674 * 2 1 3 7 7 C 1.46901 * 110.99771 * 162.86301 * 6 2 1 8 8 C 1.53001 * 109.47148 * 284.60008 * 7 6 2 9 9 O 1.42902 * 109.47047 * 68.46226 * 8 7 6 10 10 C 1.42897 * 113.99938 * 184.81019 * 9 8 7 11 11 C 1.50699 * 109.46971 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00273 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99981 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99937 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00199 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46999 * 89.99681 * 15 13 11 17 17 H 1.48499 * 109.47014 * 210.00368 * 15 13 11 18 18 H 1.48501 * 109.46888 * 330.00349 * 15 13 11 19 19 C 1.46898 * 110.99995 * 286.81814 * 6 2 1 20 20 C 1.54886 * 110.48731 * 269.69590 * 19 6 2 21 21 C 1.54887 * 102.74675 * 203.38183 * 20 19 6 22 22 C 1.54265 * 104.19827 * 37.94239 * 21 20 19 23 23 C 1.53873 * 106.59662 * 336.38965 * 22 21 20 24 24 H 1.09002 * 109.47385 * 175.36418 * 1 2 3 25 25 H 1.09006 * 109.47360 * 295.35919 * 1 2 3 26 26 H 1.09000 * 109.47329 * 55.35628 * 1 2 3 27 27 H 1.09007 * 109.47635 * 304.44433 * 4 2 1 28 28 H 1.09002 * 109.47329 * 64.44514 * 4 2 1 29 29 H 0.96690 * 114.00821 * 180.02562 * 5 4 2 30 30 H 1.08997 * 109.46879 * 44.60505 * 7 6 2 31 31 H 1.09000 * 109.46827 * 164.60135 * 7 6 2 32 32 H 1.09005 * 109.46492 * 188.45515 * 8 7 6 33 33 H 1.08997 * 109.47463 * 308.45988 * 8 7 6 34 34 H 1.08994 * 109.47289 * 299.99848 * 10 9 8 35 35 H 1.09008 * 109.46891 * 59.99950 * 10 9 8 36 36 H 0.96996 * 119.99975 * 180.02562 * 14 13 11 37 37 H 1.08999 * 110.53687 * 32.30849 * 19 6 2 38 38 H 1.08995 * 110.75651 * 85.06662 * 20 19 6 39 39 H 1.09005 * 110.75785 * 321.69371 * 20 19 6 40 40 H 1.09000 * 110.48470 * 279.26020 * 21 20 19 41 41 H 1.09001 * 110.49062 * 156.62266 * 21 20 19 42 42 H 1.08992 * 110.03432 * 95.67802 * 22 21 20 43 43 H 1.09004 * 110.02812 * 217.05830 * 22 21 20 44 44 H 1.08997 * 110.03322 * 119.28678 * 23 22 21 45 45 H 1.09006 * 110.02892 * 240.66909 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 8 3.4652 -0.6314 1.3027 6 7 2.0196 -0.6925 -1.1994 7 6 3.4307 -0.3723 -1.4529 8 6 3.5371 1.0395 -2.0328 9 8 3.1803 1.9941 -1.0310 10 6 3.1414 3.3430 -1.5010 11 6 2.7560 4.2588 -0.3680 12 1 2.5600 3.8515 0.6128 13 6 2.6527 5.6167 -0.5838 14 7 2.8900 6.1126 -1.7785 15 14 2.1743 6.7519 0.8205 16 1 3.3982 7.2085 1.5268 17 1 1.4465 7.9281 0.2802 18 1 1.2980 6.0213 1.7710 19 6 1.8210 -2.1437 -1.0873 20 6 3.0603 -2.8123 -0.4421 21 6 2.9613 -4.2736 -0.9458 22 6 2.4555 -4.1401 -2.3971 23 6 1.7304 -2.7859 -2.4870 24 1 -0.3634 -1.0243 -0.0831 25 1 -0.3634 0.4402 0.9287 26 1 -0.3634 0.5842 -0.8455 27 1 1.6131 -0.2553 2.1375 28 1 1.7432 -1.7692 1.2104 29 1 3.8584 -1.0682 2.0705 30 1 3.9887 -0.4242 -0.5180 31 1 3.8439 -1.0888 -2.1629 32 1 4.5608 1.2217 -2.3600 33 1 2.8614 1.1351 -2.8828 34 1 4.1244 3.6248 -1.8782 35 1 2.4069 3.4275 -2.3020 36 1 2.8176 7.0678 -1.9302 37 1 0.9242 -2.3633 -0.5080 38 1 2.9978 -2.7735 0.6454 39 1 3.9793 -2.3437 -0.7943 40 1 2.2486 -4.8372 -0.3437 41 1 3.9408 -4.7513 -0.9257 42 1 3.2972 -4.1597 -3.0892 43 1 1.7640 -4.9507 -2.6274 44 1 2.2203 -2.1482 -3.2228 45 1 0.6867 -2.9387 -2.7617 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339106955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:01 Heat of formation + Delta-G solvation = -116.254001 kcal Electronic energy + Delta-G solvation = -22844.416875 eV Core-core repulsion = 19668.049086 eV Total energy + Delta-G solvation = -3176.367788 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.03410 -38.42971 -37.60826 -35.86704 -34.87416 -32.83517 -30.37666 -29.58276 -28.85378 -27.06482 -26.71093 -24.51388 -23.41341 -21.83974 -21.10914 -19.76546 -18.58950 -18.21924 -17.73372 -17.50859 -17.13029 -16.35375 -16.07764 -15.59669 -15.39500 -14.81071 -14.65009 -14.40653 -14.10283 -14.00128 -13.60262 -13.33345 -13.17818 -12.95888 -12.86918 -12.59525 -12.50689 -12.27519 -12.24501 -12.06677 -12.00666 -11.86483 -11.68398 -11.42125 -11.25018 -11.20961 -11.01235 -10.83078 -10.68541 -10.05336 -8.90649 -8.29927 -6.41854 1.39172 1.42466 1.54243 2.35416 2.97976 3.03758 3.27149 3.44921 3.81185 3.87679 4.01898 4.19274 4.23661 4.38689 4.44336 4.54419 4.58751 4.59519 4.63508 4.69598 4.72590 4.75164 4.82824 4.86894 4.89498 4.91225 4.94623 5.07221 5.16239 5.20686 5.28712 5.33924 5.36295 5.43388 5.46098 5.54917 5.57753 5.59182 6.00237 6.33344 6.48889 6.59011 6.87619 6.98809 7.30160 8.82759 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.028902 B = 0.004605 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.549594 B = 6078.939395 C = 6377.377419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 H 0.087 0.913 4 C 0.054 3.946 5 O -0.572 6.572 6 N -0.526 5.526 7 C 0.062 3.938 8 C 0.059 3.941 9 O -0.388 6.388 10 C 0.210 3.790 11 C -0.539 4.539 12 H 0.061 0.939 13 C 0.005 3.995 14 N -0.933 5.933 15 Si 0.982 3.018 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.263 1.263 19 C 0.075 3.925 20 C -0.151 4.151 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.115 4.115 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.382 0.618 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.031 0.969 34 H -0.022 1.022 35 H -0.021 1.021 36 H 0.270 0.730 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.054 0.946 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 -21.683 4.134 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.052 4.052 3 H 0.105 0.895 4 C -0.025 4.025 5 O -0.380 6.380 6 N -0.249 5.249 7 C -0.065 4.065 8 C -0.019 4.019 9 O -0.308 6.308 10 C 0.135 3.865 11 C -0.577 4.577 12 H 0.079 0.921 13 C -0.193 4.193 14 N -0.572 5.572 15 Si 0.805 3.195 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.187 1.187 19 C -0.033 4.033 20 C -0.190 4.190 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.153 4.153 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.231 0.769 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.049 0.951 34 H -0.004 1.004 35 H -0.004 1.004 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.547 -21.067 3.247 21.468 hybrid contribution 0.487 0.580 0.966 1.228 sum -2.060 -20.487 4.213 21.017 Atomic orbital electron populations 1.21638 0.93226 1.02115 1.01677 1.22135 0.95757 1.00042 0.87264 0.89526 1.23033 0.81442 0.99855 0.98159 1.86596 1.20152 1.81090 1.50119 1.62147 1.18250 1.07890 1.36601 1.22327 0.90176 0.92382 1.01663 1.22604 0.97303 0.90446 0.91506 1.87808 1.89857 1.16637 1.36472 1.19758 0.93027 0.79135 0.94604 1.21327 1.47636 0.92053 0.96640 0.92101 1.25963 0.94723 0.99443 0.99143 1.70086 1.49817 1.13947 1.23381 0.85203 0.78726 0.77463 0.78134 1.19360 1.19990 1.18740 1.22684 0.98110 0.85918 0.96596 1.23382 0.98858 0.96087 1.00642 1.22308 1.01343 0.96101 0.95990 1.22106 0.99903 0.96629 0.97160 1.22136 1.00717 0.95998 0.96465 0.91204 0.91846 0.93465 0.94008 0.91394 0.76870 0.90210 0.89384 0.94450 0.95091 1.00418 1.00368 0.92165 0.89696 0.90963 0.91421 0.91014 0.91313 0.92001 0.90889 0.92737 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.32 71.98 0.67 -2.98 16 2 C 0.06 1.84 2.60 44.91 0.12 1.96 16 3 H 0.09 3.80 4.92 -2.39 -0.01 3.78 16 4 C 0.05 1.39 5.49 71.98 0.40 1.78 16 5 O -0.57 -15.31 9.06 -148.98 -1.35 -16.66 16 6 N -0.53 -16.08 4.23 -839.70 -3.55 -19.63 16 7 C 0.06 2.03 3.73 86.30 0.32 2.35 16 8 C 0.06 2.44 6.23 71.98 0.45 2.88 16 9 O -0.39 -19.77 7.41 -148.98 -1.10 -20.88 16 10 C 0.21 12.37 5.69 71.24 0.41 12.77 16 11 C -0.54 -32.93 9.43 25.60 0.24 -32.69 16 12 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 13 C 0.01 0.32 5.46 84.66 0.46 0.78 16 14 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 15 Si 0.98 45.31 29.54 68.60 2.03 47.33 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 19 C 0.08 1.72 2.08 45.99 0.10 1.82 16 20 C -0.15 -3.01 4.33 31.88 0.14 -2.87 16 21 C -0.12 -1.87 6.83 31.67 0.22 -1.66 16 22 C -0.12 -1.98 6.80 31.32 0.21 -1.76 16 23 C -0.11 -2.42 6.26 31.32 0.20 -2.23 16 24 H 0.07 1.61 6.59 -2.39 -0.02 1.59 16 25 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.07 1.41 4.83 -2.39 -0.01 1.40 16 29 H 0.38 6.57 9.12 -74.06 -0.68 5.90 16 30 H 0.08 2.74 4.34 -2.39 -0.01 2.73 16 31 H 0.09 2.51 6.40 -2.39 -0.02 2.49 16 32 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 35 H -0.02 -1.34 8.14 -2.38 -0.02 -1.36 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.09 1.84 5.68 -2.39 -0.01 1.82 16 38 H 0.07 1.35 5.28 -2.39 -0.01 1.34 16 39 H 0.07 1.56 5.35 -2.38 -0.01 1.55 16 40 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.05 1.33 7.39 -2.39 -0.02 1.31 16 45 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -69.54 332.83 0.52 -69.02 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.30 Total: 18.07 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 3.92 Total: -19.85 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -3.27 Total: -77.03 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -2.45 Total: -37.54 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -69.54 0.52 -69.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339106955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.233 kcal (2) G-P(sol) polarization free energy of solvation -69.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds