Wall clock time and date at job start Mon Mar 30 2020 05:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46881 * 2 1 4 4 O 1.42899 * 109.47093 * 119.99811 * 2 1 3 5 5 C 1.52993 * 109.47270 * 239.99938 * 2 1 3 6 6 H 1.09005 * 109.46481 * 176.48479 * 5 2 1 7 7 C 1.53042 * 109.46398 * 296.45265 * 5 2 1 8 8 C 1.53118 * 109.27919 * 179.19659 * 7 5 2 9 9 H 1.08997 * 109.52194 * 182.44149 * 8 7 5 10 10 C 1.52997 * 109.52315 * 62.24783 * 8 7 5 11 11 C 1.53119 * 109.15206 * 302.33971 * 8 7 5 12 12 C 1.53035 * 109.27716 * 57.67174 * 11 8 7 13 13 N 1.46843 * 109.51828 * 300.80172 * 12 11 8 14 14 C 1.46894 * 111.00548 * 185.84497 * 13 12 11 15 15 C 1.53000 * 109.47142 * 284.56633 * 14 13 12 16 16 O 1.42902 * 109.47313 * 66.57078 * 15 14 13 17 17 C 1.42897 * 114.00398 * 179.97438 * 16 15 14 18 18 C 1.50694 * 109.47174 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00340 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99989 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00027 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00023 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47122 * 89.99343 * 22 20 18 24 24 H 1.48500 * 109.47059 * 209.99430 * 22 20 18 25 25 H 1.48502 * 109.47123 * 329.99594 * 22 20 18 26 26 H 1.09007 * 109.47128 * 177.51621 * 1 2 3 27 27 H 1.08995 * 109.47639 * 297.52077 * 1 2 3 28 28 H 1.09001 * 109.47005 * 57.52456 * 1 2 3 29 29 H 0.96706 * 114.00159 * 59.99978 * 4 2 1 30 30 H 1.08998 * 109.49985 * 299.13890 * 7 5 2 31 31 H 1.08993 * 109.49936 * 59.25616 * 7 5 2 32 32 H 1.09006 * 109.47199 * 60.00224 * 10 8 7 33 33 H 1.09005 * 109.47574 * 179.97438 * 10 8 7 34 34 H 1.08997 * 109.47946 * 300.00060 * 10 8 7 35 35 H 1.08995 * 109.51306 * 297.72782 * 11 8 7 36 36 H 1.09007 * 109.49551 * 177.60268 * 11 8 7 37 37 H 1.09009 * 109.46699 * 180.79214 * 12 11 8 38 38 H 1.09002 * 109.46409 * 60.81722 * 12 11 8 39 39 H 1.08999 * 109.47372 * 44.56482 * 14 13 12 40 40 H 1.09005 * 109.47628 * 164.56913 * 14 13 12 41 41 H 1.08999 * 109.47027 * 186.56541 * 15 14 13 42 42 H 1.08997 * 109.47442 * 306.56604 * 15 14 13 43 43 H 1.09000 * 109.47182 * 300.00145 * 17 16 15 44 44 H 1.09006 * 109.46958 * 59.99898 * 17 16 15 45 45 H 0.97002 * 120.00164 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 1 3.1282 -0.6669 -1.2811 7 6 1.6040 -2.1876 -1.2051 8 6 2.0993 -2.9004 -2.4665 9 1 1.7540 -3.9342 -2.4601 10 6 3.6286 -2.8709 -2.5033 11 6 1.5437 -2.1830 -3.6999 12 6 1.9817 -0.7169 -3.6717 13 7 1.4828 -0.0793 -2.4467 14 6 1.7652 1.3623 -2.4508 15 6 3.2483 1.5923 -2.1534 16 8 4.0351 1.0822 -3.2317 17 6 5.4432 1.2481 -3.0532 18 6 6.1711 0.6772 -4.2428 19 1 5.6142 0.2326 -5.0542 20 6 7.5481 0.7226 -4.2953 21 7 8.2263 1.2645 -3.3074 22 14 8.4504 0.0156 -5.7702 23 1 8.6241 1.0734 -6.7979 24 1 9.7824 -0.4832 -5.3432 25 1 7.6620 -1.1054 -6.3421 26 1 -0.3634 -1.0268 -0.0445 27 1 -0.3634 0.4748 0.9113 28 1 -0.3633 0.5518 -0.8670 29 1 1.7210 -1.5952 1.2330 30 1 2.0306 -2.6677 -0.3245 31 1 0.5164 -2.2425 -1.1594 32 1 4.0231 -3.3768 -1.6221 33 1 3.9804 -3.3789 -3.4013 34 1 3.9720 -1.8365 -2.5126 35 1 0.4551 -2.2377 -3.6933 36 1 1.9273 -2.6601 -4.6018 37 1 1.5760 -0.1998 -4.5414 38 1 3.0702 -0.6626 -3.6921 39 1 1.5222 1.7773 -3.4289 40 1 1.1613 1.8531 -1.6876 41 1 3.4350 2.6603 -2.0410 42 1 3.5182 1.0773 -1.2314 43 1 5.6750 2.3090 -2.9597 44 1 5.7588 0.7262 -2.1498 45 1 9.1951 1.2967 -3.3444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339113886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:16 Heat of formation + Delta-G solvation = -107.591028 kcal Electronic energy + Delta-G solvation = -23271.263707 eV Core-core repulsion = 20095.271573 eV Total energy + Delta-G solvation = -3175.992134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.23547 -37.02134 -36.55731 -34.41950 -32.66986 -31.57842 -29.42403 -28.71366 -27.25322 -26.21688 -24.75286 -23.15583 -22.25619 -21.63464 -20.41340 -18.01820 -16.82691 -16.40040 -16.11177 -15.96229 -15.24207 -14.82990 -14.67500 -14.31103 -14.01242 -13.91291 -13.58726 -13.20593 -12.97847 -12.61754 -12.33698 -12.03369 -11.94397 -11.87543 -11.49750 -11.35706 -11.17465 -11.01483 -10.88363 -10.79803 -10.71219 -10.59623 -10.43400 -10.22965 -10.11552 -9.91624 -9.64350 -9.14653 -8.85625 -8.23018 -7.77753 -6.14078 -4.16342 3.27227 3.32650 3.37108 4.05854 4.31507 4.53169 4.73698 4.79679 4.89855 5.03719 5.19621 5.22510 5.26007 5.33419 5.51855 5.54494 5.61900 5.67251 5.75461 5.81081 5.83715 5.89466 5.95809 6.02821 6.04318 6.10708 6.16683 6.24147 6.28809 6.35086 6.37066 6.41741 6.49703 6.65300 6.89400 7.07951 7.34664 7.37715 7.42050 7.68595 7.74696 8.10892 8.50901 8.96199 9.48746 10.97319 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.005649 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.937516 B = 4955.589670 C = 5361.667943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.103 3.897 3 H 0.097 0.903 4 O -0.563 6.563 5 C 0.048 3.952 6 H 0.065 0.935 7 C -0.110 4.110 8 C -0.089 4.089 9 H 0.063 0.937 10 C -0.155 4.155 11 C -0.110 4.110 12 C 0.043 3.957 13 N -0.519 5.519 14 C 0.052 3.948 15 C 0.019 3.981 16 O -0.389 6.389 17 C 0.195 3.805 18 C -0.513 4.513 19 H 0.065 0.935 20 C 0.058 3.942 21 N -0.897 5.897 22 Si 0.905 3.095 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.271 1.271 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.370 0.630 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.038 0.962 42 H 0.044 0.956 43 H 0.003 0.997 44 H 0.002 0.998 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.464 -5.658 4.691 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.044 3.956 3 H 0.115 0.885 4 O -0.368 6.368 5 C -0.061 4.061 6 H 0.083 0.917 7 C -0.147 4.147 8 C -0.107 4.107 9 H 0.082 0.918 10 C -0.212 4.212 11 C -0.148 4.148 12 C -0.084 4.084 13 N -0.244 5.244 14 C -0.076 4.076 15 C -0.060 4.060 16 O -0.309 6.309 17 C 0.121 3.879 18 C -0.551 4.551 19 H 0.083 0.917 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.733 3.267 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.196 1.196 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.218 0.782 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.021 0.979 44 H 0.020 0.980 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.589 -5.196 4.716 17.096 hybrid contribution 1.435 -0.495 -0.626 1.642 sum -14.154 -5.691 4.090 15.794 Atomic orbital electron populations 1.22411 0.95960 1.02605 1.02212 1.22014 0.93576 0.96261 0.83795 0.88547 1.86609 1.77566 1.28956 1.43693 1.22339 0.98992 0.94164 0.90633 0.91705 1.21684 1.00962 0.94325 0.97752 1.21090 0.96247 0.98447 0.94947 0.91838 1.21973 0.94572 1.03569 1.01129 1.21616 1.00232 0.95624 0.97306 1.22345 1.01713 0.93214 0.91107 1.62217 1.58087 1.02168 1.01970 1.22326 0.93178 0.89346 1.02783 1.23114 0.92883 0.97902 0.92071 1.87865 1.20419 1.81020 1.41562 1.20181 0.74986 0.95597 0.97132 1.21001 0.90884 1.38815 1.04443 0.91663 1.24940 0.97233 0.95456 0.96758 1.69962 1.07409 1.44621 1.31622 0.86375 0.78848 0.79367 0.82149 1.20461 1.21074 1.19622 0.92387 0.92980 0.90419 0.78240 0.92007 0.91237 0.93333 0.92811 0.90895 0.92119 0.91875 0.91502 0.89964 0.90143 0.90089 0.94377 0.93841 0.97928 0.97976 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 8.96 37.16 0.33 -1.50 16 2 C 0.10 1.30 2.70 -26.73 -0.07 1.23 16 3 H 0.10 1.32 5.84 -51.93 -0.30 1.02 16 4 O -0.56 -7.38 13.26 -35.23 -0.47 -7.85 16 5 C 0.05 0.66 1.00 -67.72 -0.07 0.59 16 6 H 0.07 1.14 4.81 -51.93 -0.25 0.89 16 7 C -0.11 -1.30 4.21 -26.65 -0.11 -1.41 16 8 C -0.09 -1.13 3.22 -90.50 -0.29 -1.42 16 9 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 10 C -0.16 -2.35 8.61 37.16 0.32 -2.03 16 11 C -0.11 -1.45 5.60 -26.65 -0.15 -1.60 16 12 C 0.04 0.68 4.70 -3.84 -0.02 0.66 16 13 N -0.52 -7.35 3.90 -226.69 -0.88 -8.23 16 14 C 0.05 0.75 5.13 -3.83 -0.02 0.73 16 15 C 0.02 0.35 5.20 37.16 0.19 0.54 16 16 O -0.39 -8.86 7.55 -35.23 -0.27 -9.12 16 17 C 0.20 5.27 5.69 36.00 0.20 5.47 16 18 C -0.51 -14.78 9.43 -34.44 -0.32 -15.11 16 19 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 22 Si 0.91 21.71 29.54 -169.99 -5.02 16.69 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 H 0.06 0.56 6.39 -51.93 -0.33 0.23 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.84 6.77 -51.93 -0.35 0.49 16 29 H 0.37 3.58 7.25 45.56 0.33 3.91 16 30 H 0.06 0.66 6.78 -51.93 -0.35 0.31 16 31 H 0.07 0.76 6.43 -51.93 -0.33 0.42 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.35 4.92 -51.93 -0.26 1.09 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.04 7.96 -51.92 -0.41 0.62 16 38 H 0.08 1.59 4.16 -51.93 -0.22 1.37 16 39 H 0.08 1.18 7.88 -51.93 -0.41 0.77 16 40 H 0.08 0.99 6.24 -51.93 -0.32 0.67 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.04 0.81 5.17 -51.93 -0.27 0.54 16 43 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 44 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -30.34 328.76 -7.88 -38.21 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.83 Total: 3.71 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -0.10 Total: -12.30 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.15 Total: -34.30 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.73 Total: -16.97 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.34 -7.88 -38.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339113886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.377 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds