Wall clock time and date at job start Mon Mar 30 2020 05:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46881 * 2 1 4 4 O 1.42899 * 109.47093 * 119.99811 * 2 1 3 5 5 C 1.52993 * 109.47270 * 239.99938 * 2 1 3 6 6 H 1.09005 * 109.46481 * 176.48479 * 5 2 1 7 7 C 1.53042 * 109.46398 * 296.45265 * 5 2 1 8 8 C 1.53118 * 109.27919 * 179.19659 * 7 5 2 9 9 H 1.08997 * 109.52194 * 182.44149 * 8 7 5 10 10 C 1.52997 * 109.52315 * 62.24783 * 8 7 5 11 11 C 1.53119 * 109.15206 * 302.33971 * 8 7 5 12 12 C 1.53035 * 109.27716 * 57.67174 * 11 8 7 13 13 N 1.46843 * 109.51828 * 300.80172 * 12 11 8 14 14 C 1.46894 * 111.00548 * 185.84497 * 13 12 11 15 15 C 1.53000 * 109.47142 * 284.56633 * 14 13 12 16 16 O 1.42902 * 109.47313 * 66.57078 * 15 14 13 17 17 C 1.42897 * 114.00398 * 179.97438 * 16 15 14 18 18 C 1.50694 * 109.47174 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00340 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99989 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00027 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00023 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47122 * 89.99343 * 22 20 18 24 24 H 1.48500 * 109.47059 * 209.99430 * 22 20 18 25 25 H 1.48502 * 109.47123 * 329.99594 * 22 20 18 26 26 H 1.09007 * 109.47128 * 177.51621 * 1 2 3 27 27 H 1.08995 * 109.47639 * 297.52077 * 1 2 3 28 28 H 1.09001 * 109.47005 * 57.52456 * 1 2 3 29 29 H 0.96706 * 114.00159 * 59.99978 * 4 2 1 30 30 H 1.08998 * 109.49985 * 299.13890 * 7 5 2 31 31 H 1.08993 * 109.49936 * 59.25616 * 7 5 2 32 32 H 1.09006 * 109.47199 * 60.00224 * 10 8 7 33 33 H 1.09005 * 109.47574 * 179.97438 * 10 8 7 34 34 H 1.08997 * 109.47946 * 300.00060 * 10 8 7 35 35 H 1.08995 * 109.51306 * 297.72782 * 11 8 7 36 36 H 1.09007 * 109.49551 * 177.60268 * 11 8 7 37 37 H 1.09009 * 109.46699 * 180.79214 * 12 11 8 38 38 H 1.09002 * 109.46409 * 60.81722 * 12 11 8 39 39 H 1.08999 * 109.47372 * 44.56482 * 14 13 12 40 40 H 1.09005 * 109.47628 * 164.56913 * 14 13 12 41 41 H 1.08999 * 109.47027 * 186.56541 * 15 14 13 42 42 H 1.08997 * 109.47442 * 306.56604 * 15 14 13 43 43 H 1.09000 * 109.47182 * 300.00145 * 17 16 15 44 44 H 1.09006 * 109.46958 * 59.99898 * 17 16 15 45 45 H 0.97002 * 120.00164 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 1 3.1282 -0.6669 -1.2811 7 6 1.6040 -2.1876 -1.2051 8 6 2.0993 -2.9004 -2.4665 9 1 1.7540 -3.9342 -2.4601 10 6 3.6286 -2.8709 -2.5033 11 6 1.5437 -2.1830 -3.6999 12 6 1.9817 -0.7169 -3.6717 13 7 1.4828 -0.0793 -2.4467 14 6 1.7652 1.3623 -2.4508 15 6 3.2483 1.5923 -2.1534 16 8 4.0351 1.0822 -3.2317 17 6 5.4432 1.2481 -3.0532 18 6 6.1711 0.6772 -4.2428 19 1 5.6142 0.2326 -5.0542 20 6 7.5481 0.7226 -4.2953 21 7 8.2263 1.2645 -3.3074 22 14 8.4504 0.0156 -5.7702 23 1 8.6241 1.0734 -6.7979 24 1 9.7824 -0.4832 -5.3432 25 1 7.6620 -1.1054 -6.3421 26 1 -0.3634 -1.0268 -0.0445 27 1 -0.3634 0.4748 0.9113 28 1 -0.3633 0.5518 -0.8670 29 1 1.7210 -1.5952 1.2330 30 1 2.0306 -2.6677 -0.3245 31 1 0.5164 -2.2425 -1.1594 32 1 4.0231 -3.3768 -1.6221 33 1 3.9804 -3.3789 -3.4013 34 1 3.9720 -1.8365 -2.5126 35 1 0.4551 -2.2377 -3.6933 36 1 1.9273 -2.6601 -4.6018 37 1 1.5760 -0.1998 -4.5414 38 1 3.0702 -0.6626 -3.6921 39 1 1.5222 1.7773 -3.4289 40 1 1.1613 1.8531 -1.6876 41 1 3.4350 2.6603 -2.0410 42 1 3.5182 1.0773 -1.2314 43 1 5.6750 2.3090 -2.9597 44 1 5.7588 0.7262 -2.1498 45 1 9.1951 1.2967 -3.3444 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339113886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:15 Heat of formation + Delta-G solvation = -129.415115 kcal Electronic energy + Delta-G solvation = -23272.210070 eV Core-core repulsion = 20095.271573 eV Total energy + Delta-G solvation = -3176.938497 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39686 -38.57668 -37.77139 -35.79088 -34.79227 -32.64731 -30.84945 -29.78254 -29.13959 -27.60375 -25.83396 -24.76487 -24.07523 -22.84845 -21.54195 -19.24034 -18.58455 -17.85662 -17.63751 -17.33784 -16.79245 -16.20031 -16.06796 -15.76440 -15.43284 -15.31624 -14.74879 -14.49750 -14.37543 -13.95998 -13.67140 -13.55191 -13.24646 -13.06358 -12.91928 -12.79271 -12.74985 -12.58657 -12.37565 -12.24441 -12.06783 -12.00043 -11.78553 -11.52742 -11.32260 -11.24154 -11.01111 -10.90263 -10.67932 -10.25974 -9.09374 -8.36146 -6.48876 1.35568 1.38354 1.50174 2.29779 2.85405 2.97795 3.20436 3.57444 3.70061 3.81211 3.94232 4.12299 4.15444 4.23081 4.24833 4.31318 4.45823 4.48539 4.56967 4.60853 4.68020 4.74010 4.79219 4.85521 4.88174 4.95708 5.04728 5.06105 5.10909 5.16390 5.19469 5.22895 5.24298 5.36047 5.44758 5.48760 5.49787 5.63932 5.91015 6.14735 6.18585 6.47273 6.75410 6.83028 7.23047 8.76315 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.021001 B = 0.005649 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.937516 B = 4955.589670 C = 5361.667943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 H 0.080 0.920 4 O -0.579 6.579 5 C 0.051 3.949 6 H 0.019 0.981 7 C -0.105 4.105 8 C -0.086 4.086 9 H 0.091 0.909 10 C -0.151 4.151 11 C -0.104 4.104 12 C 0.043 3.957 13 N -0.502 5.502 14 C 0.059 3.941 15 C 0.014 3.986 16 O -0.390 6.390 17 C 0.214 3.786 18 C -0.540 4.540 19 H 0.062 0.938 20 C 0.007 3.993 21 N -0.932 5.932 22 Si 0.980 3.020 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.263 1.263 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.385 0.615 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.030 0.970 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.082 0.918 40 H 0.113 0.887 41 H 0.039 0.961 42 H 0.036 0.964 43 H -0.021 1.021 44 H -0.026 1.026 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.427 -7.062 4.318 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.046 3.954 3 H 0.098 0.902 4 O -0.386 6.386 5 C -0.058 4.058 6 H 0.037 0.963 7 C -0.143 4.143 8 C -0.104 4.104 9 H 0.109 0.891 10 C -0.209 4.209 11 C -0.142 4.142 12 C -0.085 4.085 13 N -0.227 5.227 14 C -0.069 4.069 15 C -0.065 4.065 16 O -0.310 6.310 17 C 0.139 3.861 18 C -0.577 4.577 19 H 0.080 0.920 20 C -0.192 4.192 21 N -0.571 5.571 22 Si 0.803 3.197 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.187 1.187 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.235 0.765 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.131 0.869 41 H 0.057 0.943 42 H 0.054 0.946 43 H -0.004 1.004 44 H -0.009 1.009 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.581 -6.604 4.354 19.279 hybrid contribution 2.042 -0.029 -0.428 2.086 sum -15.539 -6.633 3.926 17.346 Atomic orbital electron populations 1.22320 0.93494 1.03694 1.02634 1.21941 0.95260 0.95226 0.82958 0.90209 1.86581 1.78106 1.30307 1.43640 1.22317 0.96378 0.96115 0.91020 0.96266 1.21702 1.02315 0.92391 0.97849 1.21114 0.93999 1.00070 0.95217 0.89109 1.21917 0.97008 1.00750 1.01189 1.21587 1.01401 0.93572 0.97643 1.22284 0.99068 0.95400 0.91723 1.62316 1.56935 1.01710 1.01708 1.22415 0.90375 0.90221 1.03924 1.23424 0.94757 0.97571 0.90728 1.87876 1.18391 1.81400 1.43320 1.19720 0.77430 0.93358 0.95616 1.21289 0.91832 1.39694 1.04913 0.91994 1.25960 0.97898 0.95307 1.00020 1.70080 1.08040 1.45303 1.33707 0.85221 0.77481 0.78920 0.78064 1.19189 1.20015 1.18726 0.90903 0.92198 0.90357 0.76468 0.90654 0.88903 0.92715 0.93255 0.95071 0.89967 0.91893 0.91689 0.94238 0.89941 0.86930 0.94289 0.94599 1.00360 1.00852 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.96 71.98 0.64 -2.30 16 2 C 0.11 2.55 2.70 30.59 0.08 2.63 16 3 H 0.08 2.17 5.84 -2.39 -0.01 2.15 16 4 O -0.58 -14.49 13.26 -148.98 -1.98 -16.46 16 5 C 0.05 1.38 1.00 44.94 0.04 1.43 16 6 H 0.02 0.72 4.81 -2.38 -0.01 0.71 16 7 C -0.11 -2.25 4.21 30.65 0.13 -2.12 16 8 C -0.09 -2.02 3.22 -10.72 -0.03 -2.06 16 9 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 10 C -0.15 -4.67 8.61 71.98 0.62 -4.05 16 11 C -0.10 -2.58 5.60 30.65 0.17 -2.41 16 12 C 0.04 1.34 4.70 86.33 0.41 1.75 16 13 N -0.50 -13.81 3.90 -871.10 -3.40 -17.21 16 14 C 0.06 1.69 5.13 86.30 0.44 2.14 16 15 C 0.01 0.52 5.20 71.98 0.37 0.89 16 16 O -0.39 -18.89 7.55 -148.98 -1.12 -20.01 16 17 C 0.21 12.30 5.69 71.23 0.41 12.71 16 18 C -0.54 -32.37 9.43 25.60 0.24 -32.13 16 19 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 20 C 0.01 0.38 5.46 84.66 0.46 0.85 16 21 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 22 Si 0.98 44.87 29.54 68.60 2.03 46.89 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 26 H 0.07 1.11 6.39 -2.38 -0.02 1.09 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.42 6.77 -2.39 -0.02 1.40 16 29 H 0.39 6.64 7.25 -74.05 -0.54 6.10 16 30 H 0.07 1.42 6.78 -2.39 -0.02 1.41 16 31 H 0.09 1.61 6.43 -2.39 -0.02 1.60 16 32 H 0.05 1.55 8.14 -2.38 -0.02 1.54 16 33 H 0.05 1.50 8.14 -2.38 -0.02 1.49 16 34 H 0.03 1.22 4.92 -2.39 -0.01 1.21 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.06 2.01 7.96 -2.38 -0.02 1.99 16 38 H 0.04 1.61 4.16 -2.39 -0.01 1.60 16 39 H 0.08 2.37 7.88 -2.39 -0.02 2.35 16 40 H 0.11 2.57 6.24 -2.38 -0.01 2.55 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.04 1.44 5.17 -2.39 -0.01 1.42 16 43 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 44 H -0.03 -1.62 8.14 -2.38 -0.02 -1.64 16 45 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -68.57 328.76 0.25 -68.33 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.44 Total: 18.04 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 3.99 Total: -22.68 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -3.11 Total: -74.10 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -3.10 Total: -36.48 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -68.57 0.25 -68.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339113886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.089 kcal (2) G-P(sol) polarization free energy of solvation -68.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds