Wall clock time and date at job start Mon Mar 30 2020 05:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47137 * 2 1 4 4 O 1.42898 * 109.47243 * 239.99902 * 2 1 3 5 5 C 1.53007 * 109.47336 * 119.99793 * 2 1 3 6 6 C 1.52993 * 109.47434 * 184.06452 * 5 2 1 7 7 H 1.08993 * 109.45678 * 176.08276 * 6 5 2 8 8 C 1.53042 * 109.46276 * 56.10632 * 6 5 2 9 9 C 1.53120 * 109.27982 * 180.80463 * 8 6 5 10 10 C 1.53128 * 109.15807 * 57.65774 * 9 8 6 11 11 C 1.53044 * 109.27609 * 302.34379 * 10 9 8 12 12 N 1.46846 * 109.46222 * 296.05666 * 6 5 2 13 13 C 1.46899 * 110.99884 * 305.85516 * 12 6 5 14 14 C 1.53001 * 109.47005 * 299.27418 * 13 12 6 15 15 O 1.42901 * 109.47024 * 68.03642 * 14 13 12 16 16 C 1.42899 * 114.00158 * 184.76213 * 15 14 13 17 17 C 1.50694 * 109.47379 * 175.08384 * 16 15 14 18 18 H 1.08005 * 119.99913 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00343 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99807 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00245 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47153 * 90.00092 * 21 19 17 23 23 H 1.48494 * 109.47546 * 209.99905 * 21 19 17 24 24 H 1.48501 * 109.47214 * 330.00280 * 21 19 17 25 25 H 1.09005 * 109.47333 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47183 * 299.99871 * 1 2 3 27 27 H 1.08997 * 109.47378 * 60.00237 * 1 2 3 28 28 H 0.96696 * 114.00409 * 65.10759 * 4 2 1 29 29 H 1.08997 * 109.46795 * 64.05987 * 5 2 1 30 30 H 1.09004 * 109.46500 * 304.06788 * 5 2 1 31 31 H 1.08999 * 109.50238 * 60.86535 * 8 6 5 32 32 H 1.08999 * 109.53517 * 300.76439 * 8 6 5 33 33 H 1.08999 * 109.52340 * 297.75386 * 9 8 6 34 34 H 1.08998 * 109.52326 * 177.55863 * 9 8 6 35 35 H 1.09001 * 109.49873 * 182.40715 * 10 9 8 36 36 H 1.08993 * 109.50518 * 62.28666 * 10 9 8 37 37 H 1.08994 * 109.45956 * 299.16285 * 11 10 9 38 38 H 1.08999 * 109.45794 * 179.19728 * 11 10 9 39 39 H 1.09001 * 109.47296 * 179.27791 * 13 12 6 40 40 H 1.08996 * 109.47133 * 59.27560 * 13 12 6 41 41 H 1.08998 * 109.47063 * 308.03806 * 14 13 12 42 42 H 1.08998 * 109.47464 * 188.03732 * 14 13 12 43 43 H 1.09006 * 109.46693 * 295.07855 * 16 15 14 44 44 H 1.08994 * 109.47258 * 55.07692 * 16 15 14 45 45 H 0.96992 * 119.99876 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 3.5665 -0.6333 1.3015 7 1 3.9249 -1.0861 2.2259 8 6 3.9947 0.8352 1.2536 9 6 5.5233 0.9175 1.2857 10 6 6.0942 0.1243 0.1069 11 6 5.6052 -1.3236 0.1880 12 7 4.1374 -1.3486 0.1530 13 6 3.6357 -2.7278 0.0895 14 6 4.0366 -3.4754 1.3628 15 8 3.3272 -2.9317 2.4778 16 6 3.7087 -3.4888 3.7372 17 6 2.9906 -2.7634 4.8457 18 1 2.3110 -1.9571 4.6119 19 6 3.2010 -3.1288 6.1585 20 7 4.0281 -4.1109 6.4431 21 14 2.3113 -2.2291 7.5325 22 1 1.0189 -2.9053 7.8115 23 1 3.1508 -2.2416 8.7573 24 1 2.0567 -0.8251 7.1213 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.7869 -0.2271 -1.9959 29 1 1.7373 -1.7677 1.2137 30 1 1.6183 -0.2511 2.1378 31 1 3.5837 1.3624 2.1145 32 1 3.6248 1.2929 0.3360 33 1 5.8912 0.4955 2.2210 34 1 5.8337 1.9595 1.2081 35 1 7.1832 0.1435 0.1487 36 1 5.7574 0.5702 -0.8289 37 1 5.9540 -1.7731 1.1177 38 1 5.9984 -1.8876 -0.6578 39 1 4.0642 -3.2308 -0.7773 40 1 2.5493 -2.7155 0.0022 41 1 5.1087 -3.3660 1.5260 42 1 3.7913 -4.5320 1.2563 43 1 3.4427 -4.5456 3.7625 44 1 4.7852 -3.3819 3.8706 45 1 4.1759 -4.3682 7.3666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339138889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:21 Heat of formation + Delta-G solvation = -102.606039 kcal Electronic energy + Delta-G solvation = -23241.544133 eV Core-core repulsion = 20065.768164 eV Total energy + Delta-G solvation = -3175.775968 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.54296 -36.90304 -36.29388 -33.47689 -32.55798 -32.47027 -30.02615 -28.52721 -26.83608 -26.09136 -23.71636 -22.59410 -22.04222 -21.08252 -20.53737 -18.41606 -17.03337 -16.38305 -15.80338 -15.59817 -14.98505 -14.63084 -14.38810 -14.24231 -14.08165 -13.54010 -13.41009 -13.05169 -12.79142 -12.43667 -12.26150 -11.88573 -11.63760 -11.53066 -11.37292 -11.29597 -11.18509 -11.10075 -10.81613 -10.78560 -10.65220 -10.43230 -10.09829 -10.01946 -9.78886 -9.73662 -9.34185 -9.09883 -8.76277 -8.16507 -7.40322 -6.11784 -4.13481 3.28246 3.33644 3.38001 4.32683 4.43010 4.69257 4.98675 5.10206 5.15342 5.24633 5.24949 5.26173 5.37882 5.51139 5.60183 5.75725 5.81290 5.85625 5.87671 5.94067 5.98955 6.08555 6.09749 6.10591 6.20348 6.23492 6.30924 6.35541 6.37394 6.41499 6.56438 6.57804 6.68355 6.89521 7.01028 7.12623 7.43101 7.74920 7.77131 7.78724 8.09720 8.15311 8.57562 8.99979 9.51469 10.99772 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016960 B = 0.006082 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.535933 B = 4602.307821 C = 4988.705538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.105 3.895 3 H 0.047 0.953 4 O -0.536 6.536 5 C -0.099 4.099 6 C 0.084 3.916 7 H 0.083 0.917 8 C -0.114 4.114 9 C -0.121 4.121 10 C -0.110 4.110 11 C 0.048 3.952 12 N -0.503 5.503 13 C 0.066 3.934 14 C 0.019 3.981 15 O -0.383 6.383 16 C 0.193 3.807 17 C -0.510 4.510 18 H 0.066 0.934 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.271 1.271 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.356 0.644 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.035 0.965 42 H 0.034 0.966 43 H 0.002 0.998 44 H 0.001 0.999 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 8.746 -14.420 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.046 3.954 3 H 0.065 0.935 4 O -0.338 6.338 5 C -0.137 4.137 6 C -0.024 4.024 7 H 0.100 0.900 8 C -0.152 4.152 9 C -0.159 4.159 10 C -0.148 4.148 11 C -0.080 4.080 12 N -0.227 5.227 13 C -0.062 4.062 14 C -0.060 4.060 15 O -0.303 6.303 16 C 0.119 3.881 17 C -0.549 4.549 18 H 0.084 0.916 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.732 3.268 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.196 1.196 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.200 0.800 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.020 0.980 44 H 0.018 0.982 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.712 8.617 -14.241 16.661 hybrid contribution -0.125 0.021 1.303 1.309 sum -0.838 8.639 -12.938 15.579 Atomic orbital electron populations 1.22557 0.98055 1.02405 1.01384 1.21802 0.90943 0.95360 0.87285 0.93505 1.86806 1.80254 1.52078 1.14656 1.21634 0.95183 1.02364 0.94480 1.21745 0.94070 0.92719 0.93834 0.89964 1.21729 0.95158 0.97139 1.01166 1.21566 0.96374 0.99289 0.98648 1.21508 0.98864 0.95577 0.98822 1.22094 0.89584 0.96413 0.99909 1.62115 1.04759 1.13597 1.42200 1.22214 1.02231 0.87748 0.94056 1.23138 0.95947 0.97137 0.89767 1.87941 1.63196 1.63820 1.15347 1.20158 0.94820 0.93606 0.79529 1.21025 1.25987 1.18023 0.89835 0.91605 1.24945 0.95480 0.95336 0.98723 1.69965 1.35943 1.28470 1.19393 0.86389 0.79396 0.80101 0.80936 1.20493 1.21130 1.19622 0.92087 0.92168 0.93314 0.80014 0.89731 0.91027 0.92270 0.91847 0.92167 0.92710 0.92512 0.91699 0.94983 0.91761 0.91125 0.89153 0.94684 0.94790 0.98037 0.98159 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 9.56 37.16 0.36 -1.80 16 2 C 0.11 1.36 3.25 -26.73 -0.09 1.28 16 3 H 0.05 0.58 6.11 -51.93 -0.32 0.27 16 4 O -0.54 -6.88 10.27 -35.23 -0.36 -7.24 16 5 C -0.10 -1.61 3.96 -26.73 -0.11 -1.72 16 6 C 0.08 1.42 1.47 -67.72 -0.10 1.32 16 7 H 0.08 1.74 5.71 -51.93 -0.30 1.44 16 8 C -0.11 -1.67 4.95 -26.65 -0.13 -1.80 16 9 C -0.12 -1.67 6.00 -26.60 -0.16 -1.83 16 10 C -0.11 -1.43 6.09 -26.64 -0.16 -1.59 16 11 C 0.05 0.71 5.00 -3.83 -0.02 0.70 16 12 N -0.50 -7.86 3.24 -226.69 -0.73 -8.60 16 13 C 0.07 1.07 4.93 -3.82 -0.02 1.05 16 14 C 0.02 0.37 5.75 37.16 0.21 0.58 16 15 O -0.38 -8.82 5.74 -35.23 -0.20 -9.02 16 16 C 0.19 5.24 5.70 36.00 0.21 5.45 16 17 C -0.51 -14.71 9.43 -34.44 -0.32 -15.03 16 18 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 21 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.36 3.24 9.12 45.56 0.42 3.65 16 29 H 0.08 1.56 5.16 -51.93 -0.27 1.30 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.87 6.23 -51.93 -0.32 0.55 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.03 0.54 6.52 -51.93 -0.34 0.20 16 38 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 40 H 0.09 1.55 5.30 -51.93 -0.28 1.27 16 41 H 0.04 0.68 6.22 -51.93 -0.32 0.36 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 44 H 0.00 0.02 8.12 -51.93 -0.42 -0.40 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -30.27 335.32 -8.15 -38.41 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.18 Total: 2.75 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.43 Total: -11.88 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.00 Total: -34.79 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.56 Total: -16.26 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.27 -8.15 -38.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339138889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.193 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds