Wall clock time and date at job start Mon Mar 30 2020 05:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47137 * 2 1 4 4 O 1.42898 * 109.47243 * 239.99902 * 2 1 3 5 5 C 1.53007 * 109.47336 * 119.99793 * 2 1 3 6 6 C 1.52993 * 109.47434 * 184.06452 * 5 2 1 7 7 H 1.08993 * 109.45678 * 176.08276 * 6 5 2 8 8 C 1.53042 * 109.46276 * 56.10632 * 6 5 2 9 9 C 1.53120 * 109.27982 * 180.80463 * 8 6 5 10 10 C 1.53128 * 109.15807 * 57.65774 * 9 8 6 11 11 C 1.53044 * 109.27609 * 302.34379 * 10 9 8 12 12 N 1.46846 * 109.46222 * 296.05666 * 6 5 2 13 13 C 1.46899 * 110.99884 * 305.85516 * 12 6 5 14 14 C 1.53001 * 109.47005 * 299.27418 * 13 12 6 15 15 O 1.42901 * 109.47024 * 68.03642 * 14 13 12 16 16 C 1.42899 * 114.00158 * 184.76213 * 15 14 13 17 17 C 1.50694 * 109.47379 * 175.08384 * 16 15 14 18 18 H 1.08005 * 119.99913 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00343 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99807 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00245 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47153 * 90.00092 * 21 19 17 23 23 H 1.48494 * 109.47546 * 209.99905 * 21 19 17 24 24 H 1.48501 * 109.47214 * 330.00280 * 21 19 17 25 25 H 1.09005 * 109.47333 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47183 * 299.99871 * 1 2 3 27 27 H 1.08997 * 109.47378 * 60.00237 * 1 2 3 28 28 H 0.96696 * 114.00409 * 65.10759 * 4 2 1 29 29 H 1.08997 * 109.46795 * 64.05987 * 5 2 1 30 30 H 1.09004 * 109.46500 * 304.06788 * 5 2 1 31 31 H 1.08999 * 109.50238 * 60.86535 * 8 6 5 32 32 H 1.08999 * 109.53517 * 300.76439 * 8 6 5 33 33 H 1.08999 * 109.52340 * 297.75386 * 9 8 6 34 34 H 1.08998 * 109.52326 * 177.55863 * 9 8 6 35 35 H 1.09001 * 109.49873 * 182.40715 * 10 9 8 36 36 H 1.08993 * 109.50518 * 62.28666 * 10 9 8 37 37 H 1.08994 * 109.45956 * 299.16285 * 11 10 9 38 38 H 1.08999 * 109.45794 * 179.19728 * 11 10 9 39 39 H 1.09001 * 109.47296 * 179.27791 * 13 12 6 40 40 H 1.08996 * 109.47133 * 59.27560 * 13 12 6 41 41 H 1.08998 * 109.47063 * 308.03806 * 14 13 12 42 42 H 1.08998 * 109.47464 * 188.03732 * 14 13 12 43 43 H 1.09006 * 109.46693 * 295.07855 * 16 15 14 44 44 H 1.08994 * 109.47258 * 55.07692 * 16 15 14 45 45 H 0.96992 * 119.99876 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 3.5665 -0.6333 1.3015 7 1 3.9249 -1.0861 2.2259 8 6 3.9947 0.8352 1.2536 9 6 5.5233 0.9175 1.2857 10 6 6.0942 0.1243 0.1069 11 6 5.6052 -1.3236 0.1880 12 7 4.1374 -1.3486 0.1530 13 6 3.6357 -2.7278 0.0895 14 6 4.0366 -3.4754 1.3628 15 8 3.3272 -2.9317 2.4778 16 6 3.7087 -3.4888 3.7372 17 6 2.9906 -2.7634 4.8457 18 1 2.3110 -1.9571 4.6119 19 6 3.2010 -3.1288 6.1585 20 7 4.0281 -4.1109 6.4431 21 14 2.3113 -2.2291 7.5325 22 1 1.0189 -2.9053 7.8115 23 1 3.1508 -2.2416 8.7573 24 1 2.0567 -0.8251 7.1213 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.7869 -0.2271 -1.9959 29 1 1.7373 -1.7677 1.2137 30 1 1.6183 -0.2511 2.1378 31 1 3.5837 1.3624 2.1145 32 1 3.6248 1.2929 0.3360 33 1 5.8912 0.4955 2.2210 34 1 5.8337 1.9595 1.2081 35 1 7.1832 0.1435 0.1487 36 1 5.7574 0.5702 -0.8289 37 1 5.9540 -1.7731 1.1177 38 1 5.9984 -1.8876 -0.6578 39 1 4.0642 -3.2308 -0.7773 40 1 2.5493 -2.7155 0.0022 41 1 5.1087 -3.3660 1.5260 42 1 3.7913 -4.5320 1.2563 43 1 3.4427 -4.5456 3.7625 44 1 4.7852 -3.3819 3.8706 45 1 4.1759 -4.3682 7.3666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339138889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:21 Heat of formation + Delta-G solvation = -122.934629 kcal Electronic energy + Delta-G solvation = -23242.425646 eV Core-core repulsion = 20065.768164 eV Total energy + Delta-G solvation = -3176.657482 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.86185 -38.37282 -37.64956 -35.17391 -34.37073 -33.67322 -31.07958 -30.23195 -28.71170 -27.32490 -25.08613 -24.56463 -23.43404 -22.38770 -21.69611 -19.72785 -18.59443 -18.09243 -17.46508 -17.21991 -16.49165 -16.18104 -15.91654 -15.53324 -15.40107 -15.07610 -14.57057 -14.43699 -14.19240 -13.90148 -13.61501 -13.16159 -13.15716 -13.06088 -12.80747 -12.68834 -12.63917 -12.51310 -12.49535 -12.27855 -12.19918 -11.98940 -11.61272 -11.31981 -11.16268 -11.05785 -10.93112 -10.78600 -10.41214 -10.12748 -8.82510 -8.34282 -6.46355 1.36265 1.39029 1.50795 2.31280 2.99573 3.06332 3.30468 3.67832 3.92422 4.01442 4.11240 4.18068 4.25795 4.31161 4.37457 4.46162 4.49222 4.50292 4.64878 4.70865 4.72695 4.81234 4.85774 4.93595 4.99143 5.02416 5.11298 5.12657 5.14567 5.19356 5.21365 5.28613 5.32372 5.41726 5.43716 5.53051 5.58016 5.66961 5.94297 6.40123 6.43270 6.54189 6.79572 7.25437 7.30700 8.78294 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016960 B = 0.006082 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.535933 B = 4602.307821 C = 4988.705538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.117 3.883 3 H 0.060 0.940 4 O -0.549 6.549 5 C -0.099 4.099 6 C 0.087 3.913 7 H 0.031 0.969 8 C -0.109 4.109 9 C -0.122 4.122 10 C -0.103 4.103 11 C 0.044 3.956 12 N -0.489 5.489 13 C 0.076 3.924 14 C 0.014 3.986 15 O -0.381 6.381 16 C 0.211 3.789 17 C -0.536 4.536 18 H 0.064 0.936 19 C 0.005 3.995 20 N -0.933 5.933 21 Si 0.979 3.021 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.262 1.262 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.376 0.624 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.002 0.998 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.030 0.970 42 H 0.036 0.964 43 H -0.024 1.024 44 H -0.026 1.026 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 10.777 -15.799 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.058 3.942 3 H 0.078 0.922 4 O -0.355 6.355 5 C -0.136 4.136 6 C -0.022 4.022 7 H 0.049 0.951 8 C -0.147 4.147 9 C -0.160 4.160 10 C -0.140 4.140 11 C -0.084 4.084 12 N -0.212 5.212 13 C -0.053 4.053 14 C -0.065 4.065 15 O -0.301 6.301 16 C 0.136 3.864 17 C -0.574 4.574 18 H 0.082 0.918 19 C -0.193 4.193 20 N -0.573 5.573 21 Si 0.802 3.198 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.186 1.186 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.223 0.777 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.020 0.980 38 H 0.101 0.899 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.048 0.952 42 H 0.054 0.946 43 H -0.006 1.006 44 H -0.008 1.008 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.269 10.655 -15.659 18.982 hybrid contribution 0.100 -0.668 1.657 1.789 sum -1.169 9.986 -14.002 17.238 Atomic orbital electron populations 1.22497 0.96878 1.01876 1.02652 1.21576 0.91700 0.95034 0.85902 0.92179 1.86739 1.80450 1.52774 1.15500 1.21558 0.94880 1.00988 0.96217 1.21610 0.94482 0.94171 0.91915 0.95112 1.21689 0.95886 0.95201 1.01911 1.21586 0.95697 1.00769 0.97916 1.21485 0.99835 0.93802 0.98915 1.22225 0.88855 0.98176 0.99155 1.62193 1.05333 1.12762 1.40924 1.22215 1.02064 0.88071 0.92919 1.23428 0.95460 0.97828 0.89803 1.87975 1.63580 1.63695 1.14838 1.19725 0.92997 0.92158 0.81559 1.21311 1.26628 1.18498 0.90960 0.91806 1.25963 0.96005 0.95966 1.01376 1.70085 1.37037 1.29749 1.20420 0.85237 0.78314 0.79042 0.77202 1.19295 1.20088 1.18599 0.93512 0.92194 0.90745 0.77682 0.92557 0.92338 0.92623 0.89940 0.94745 0.90242 0.90879 0.90161 0.97983 0.89879 0.88444 0.89798 0.95225 0.94550 1.00607 1.00817 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.86 9.56 71.98 0.69 -3.17 16 2 C 0.12 2.83 3.25 30.59 0.10 2.93 16 3 H 0.06 1.32 6.11 -2.39 -0.01 1.31 16 4 O -0.55 -12.73 10.27 -148.98 -1.53 -14.26 16 5 C -0.10 -3.26 3.96 30.59 0.12 -3.14 16 6 C 0.09 2.95 1.47 44.94 0.07 3.02 16 7 H 0.03 1.39 5.71 -2.39 -0.01 1.38 16 8 C -0.11 -3.07 4.95 30.65 0.15 -2.92 16 9 C -0.12 -3.21 6.00 30.68 0.18 -3.02 16 10 C -0.10 -2.44 6.09 30.65 0.19 -2.26 16 11 C 0.04 1.26 5.00 86.33 0.43 1.70 16 12 N -0.49 -14.94 3.24 -871.13 -2.82 -17.76 16 13 C 0.08 2.44 4.93 86.30 0.43 2.87 16 14 C 0.01 0.54 5.75 71.98 0.41 0.95 16 15 O -0.38 -18.62 5.74 -148.98 -0.85 -19.47 16 16 C 0.21 12.16 5.70 71.23 0.41 12.57 16 17 C -0.54 -32.13 9.43 25.60 0.24 -31.89 16 18 H 0.06 3.75 7.81 -2.91 -0.02 3.73 16 19 C 0.01 0.29 5.46 84.65 0.46 0.76 16 20 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 21 Si 0.98 44.88 29.54 68.60 2.03 46.90 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 25 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.38 5.50 9.12 -74.06 -0.68 4.83 16 29 H 0.06 2.16 5.16 -2.39 -0.01 2.14 16 30 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 2.02 6.23 -2.39 -0.01 2.01 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.00 0.07 6.52 -2.39 -0.02 0.05 16 38 H 0.08 2.07 8.09 -2.39 -0.02 2.05 16 39 H 0.10 2.65 8.10 -2.39 -0.02 2.63 16 40 H 0.08 2.87 5.30 -2.39 -0.01 2.86 16 41 H 0.03 1.21 6.22 -2.39 -0.01 1.20 16 42 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 43 H -0.02 -1.46 8.14 -2.38 -0.02 -1.48 16 44 H -0.03 -1.60 8.12 -2.39 -0.02 -1.61 16 45 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -67.69 335.32 1.26 -66.43 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.28 Total: 16.81 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 3.88 Total: -21.61 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.54 Total: -74.80 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -2.38 Total: -33.73 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.69 1.26 -66.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339138889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.506 kcal (2) G-P(sol) polarization free energy of solvation -67.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds