Wall clock time and date at job start Mon Mar 30 2020 05:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46672 * 2 1 4 4 C 1.52992 * 109.47235 * 120.00677 * 2 1 3 5 5 O 1.42902 * 109.47013 * 184.14254 * 4 2 1 6 6 N 1.46905 * 109.46664 * 240.00807 * 2 1 3 7 7 C 1.46898 * 111.00029 * 97.87330 * 6 2 1 8 8 C 1.53005 * 109.47068 * 66.04224 * 7 6 2 9 9 O 1.42895 * 109.47077 * 65.00283 * 8 7 6 10 10 C 1.42898 * 114.00007 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47179 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99781 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99812 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00414 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99627 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47325 * 59.99893 * 15 13 11 17 17 H 1.48509 * 109.46939 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47410 * 299.99438 * 15 13 11 19 19 C 1.46896 * 110.99993 * 333.91746 * 6 2 1 20 20 C 1.53004 * 109.47300 * 287.93157 * 19 6 2 21 21 C 1.53770 * 113.61929 * 277.49220 * 20 19 6 22 22 C 1.53946 * 87.02316 * 220.04500 * 21 20 19 23 23 C 1.53775 * 113.61393 * 179.87828 * 20 19 6 24 24 H 1.09000 * 109.46864 * 299.99348 * 1 2 3 25 25 H 1.09000 * 109.47557 * 59.99106 * 1 2 3 26 26 H 1.09004 * 109.47268 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47314 * 304.14112 * 4 2 1 28 28 H 1.08997 * 109.47243 * 64.14282 * 4 2 1 29 29 H 0.96700 * 113.99592 * 180.02562 * 5 4 2 30 30 H 1.08997 * 109.47515 * 186.04362 * 7 6 2 31 31 H 1.09000 * 109.47301 * 306.04581 * 7 6 2 32 32 H 1.09007 * 109.46918 * 184.99952 * 8 7 6 33 33 H 1.08996 * 109.47091 * 304.99598 * 8 7 6 34 34 H 1.09004 * 109.47028 * 299.99549 * 10 9 8 35 35 H 1.08997 * 109.47226 * 59.99478 * 10 9 8 36 36 H 0.96996 * 120.00547 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.47590 * 47.93888 * 19 6 2 38 38 H 1.09004 * 109.46932 * 167.93540 * 19 6 2 39 39 H 1.09008 * 112.84137 * 48.68923 * 20 19 6 40 40 H 1.09006 * 113.61309 * 334.56742 * 21 20 19 41 41 H 1.09000 * 113.61713 * 105.46705 * 21 20 19 42 42 H 1.09002 * 113.53939 * 270.81511 * 22 21 20 43 43 H 1.09001 * 113.66914 * 139.92554 * 22 21 20 44 44 H 1.08999 * 113.61585 * 254.52873 * 23 20 19 45 45 H 1.09000 * 113.61908 * 25.35592 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 8 3.4657 -0.6376 1.2987 6 7 2.0196 -0.6924 -1.1996 7 6 2.3721 0.2674 -2.2543 8 6 3.5706 1.1044 -1.8024 9 8 4.7150 0.2603 -1.6615 10 6 5.8953 0.9469 -1.2402 11 6 7.0331 -0.0344 -1.1246 12 1 6.8710 -1.0781 -1.3499 13 6 8.2808 0.4001 -0.7302 14 7 8.4781 1.6709 -0.4553 15 14 9.6910 -0.8165 -0.5862 16 1 9.9332 -1.4522 -1.9063 17 1 10.9176 -0.1029 -0.1485 18 1 9.3436 -1.8614 0.4101 19 6 1.0337 -1.6679 -1.6836 20 6 0.9873 -2.8627 -0.7290 21 6 2.0926 -3.9003 -0.9866 22 6 1.0305 -4.9808 -0.7136 23 6 -0.0214 -3.9458 -1.1463 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6174 -0.2523 2.1376 28 1 1.7386 -1.7682 1.2126 29 1 3.8588 -1.0750 2.0663 30 1 2.6290 -0.2724 -3.1658 31 1 1.5232 0.9232 -2.4474 32 1 3.7767 1.8748 -2.5456 33 1 3.3454 1.5741 -0.8450 34 1 6.1497 1.7143 -1.9713 35 1 5.7180 1.4131 -0.2710 36 1 9.3559 1.9767 -0.1782 37 1 0.0505 -1.1996 -1.7276 38 1 1.3185 -2.0090 -2.6790 39 1 0.9020 -2.5660 0.3165 40 1 2.4614 -3.8999 -2.0124 41 1 2.8936 -3.8776 -0.2478 42 1 0.9579 -5.2644 0.3364 43 1 1.0984 -5.8397 -1.3813 44 1 -0.9244 -3.9598 -0.5361 45 1 -0.2328 -3.9569 -2.2156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339144506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:08 Heat of formation + Delta-G solvation = -60.983098 kcal Electronic energy + Delta-G solvation = -22498.814382 eV Core-core repulsion = 19324.843320 eV Total energy + Delta-G solvation = -3173.971062 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.77067 -37.65976 -36.25632 -35.38203 -32.59917 -31.34524 -29.63901 -27.21395 -26.27557 -25.76114 -25.39759 -22.47386 -22.14202 -21.70892 -19.63465 -19.06749 -16.85724 -16.35686 -16.15317 -15.69866 -15.35885 -15.18450 -14.71411 -14.20759 -13.97796 -13.69669 -13.63075 -13.22964 -12.67716 -12.36474 -12.31500 -12.13781 -12.03853 -11.88160 -11.72839 -11.35482 -11.11426 -10.94395 -10.72493 -10.65817 -10.55098 -10.37933 -10.27803 -10.10132 -10.03718 -9.73315 -9.25356 -8.89334 -8.58419 -7.88964 -7.81357 -5.94478 -3.93540 3.41677 3.43422 3.48214 3.98905 4.48913 4.53488 4.68502 4.75637 4.80835 4.98870 5.03924 5.14803 5.22733 5.39021 5.41852 5.43889 5.52811 5.57639 5.60161 5.66542 5.70802 5.77512 5.81347 5.84146 5.87962 5.92379 5.96250 6.03503 6.19057 6.23343 6.30141 6.31918 6.38991 6.51999 6.63539 7.33532 7.43891 7.46798 7.68990 7.97745 8.23860 8.37983 8.86223 9.22578 9.70143 11.17527 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019028 B = 0.005000 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.150175 B = 5598.176531 C = 6213.674270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.076 3.924 3 H 0.083 0.917 4 C 0.083 3.917 5 O -0.535 6.535 6 N -0.503 5.503 7 C 0.062 3.938 8 C 0.071 3.929 9 O -0.370 6.370 10 C 0.199 3.801 11 C -0.500 4.500 12 H 0.064 0.936 13 C 0.054 3.946 14 N -0.903 5.903 15 Si 0.905 3.095 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.056 3.944 20 C -0.110 4.110 21 C -0.120 4.120 22 C -0.147 4.147 23 C -0.139 4.139 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.049 0.951 29 H 0.368 0.632 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.036 0.964 34 H -0.005 1.005 35 H 0.003 0.997 36 H 0.261 0.739 37 H 0.039 0.961 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.469 -7.115 1.303 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.033 4.033 3 H 0.101 0.899 4 C 0.005 3.995 5 O -0.338 6.338 6 N -0.226 5.226 7 C -0.065 4.065 8 C -0.007 4.007 9 O -0.289 6.289 10 C 0.124 3.876 11 C -0.538 4.538 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.543 5.543 15 Si 0.732 3.268 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.072 4.072 20 C -0.128 4.128 21 C -0.158 4.158 22 C -0.184 4.184 23 C -0.177 4.177 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.213 0.787 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.013 0.987 35 H 0.021 0.979 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.977 -7.100 0.873 20.280 hybrid contribution 0.141 0.018 0.503 0.523 sum -18.836 -7.082 1.376 20.170 Atomic orbital electron populations 1.22427 0.96831 1.02662 1.01898 1.21740 0.91780 0.98687 0.91076 0.89939 1.22361 0.83296 0.98665 0.95226 1.86851 1.17905 1.79669 1.49349 1.61944 1.40336 1.15691 1.04597 1.22139 0.95529 0.94102 0.94766 1.22208 0.88069 0.92399 0.98038 1.87950 1.17684 1.34563 1.88685 1.20072 0.81546 0.92736 0.93210 1.21018 0.92992 0.95341 1.44471 0.91762 1.24916 0.98626 0.95423 0.95659 1.69962 1.23180 1.14186 1.47004 0.86455 0.80890 0.80856 0.78555 1.20206 1.21375 1.20136 1.22306 0.93943 0.92908 0.98007 1.22807 0.96595 0.93314 1.00113 1.22804 0.96364 0.94269 1.02356 1.22878 0.97475 0.97066 1.00981 1.22944 0.96861 0.96784 1.01068 0.92301 0.92370 0.91256 0.95140 0.93357 0.78727 0.90387 0.94952 0.95082 0.94635 0.98702 0.97895 0.92914 0.94275 0.91318 0.88576 0.90231 0.91263 0.90699 0.91898 0.92118 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 7.77 37.16 0.29 -1.58 16 2 C 0.08 1.06 2.30 -67.71 -0.16 0.91 16 3 H 0.08 1.30 5.84 -51.93 -0.30 1.00 16 4 C 0.08 1.16 6.43 37.15 0.24 1.40 16 5 O -0.54 -9.63 13.59 -35.23 -0.48 -10.10 16 6 N -0.50 -7.75 4.23 -226.65 -0.96 -8.71 16 7 C 0.06 1.00 5.26 -3.82 -0.02 0.98 16 8 C 0.07 1.43 5.99 37.16 0.22 1.66 16 9 O -0.37 -9.54 10.27 -35.23 -0.36 -9.90 16 10 C 0.20 5.79 5.69 36.01 0.20 6.00 16 11 C -0.50 -15.39 9.43 -34.44 -0.32 -15.71 16 12 H 0.06 1.98 7.81 -52.49 -0.41 1.57 16 13 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -28.04 13.29 55.43 0.74 -27.31 16 15 Si 0.90 22.66 29.54 -169.99 -5.02 17.64 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C 0.06 0.70 4.27 -3.82 -0.02 0.68 16 20 C -0.11 -1.26 2.54 -89.81 -0.23 -1.49 16 21 C -0.12 -1.52 7.65 -25.84 -0.20 -1.72 16 22 C -0.15 -1.47 8.09 -25.83 -0.21 -1.68 16 23 C -0.14 -1.31 7.65 -25.92 -0.20 -1.51 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.58 7.69 -51.93 -0.40 0.19 16 26 H 0.07 0.68 5.17 -51.93 -0.27 0.41 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.62 4.78 -51.93 -0.25 0.37 16 29 H 0.37 5.15 9.12 45.56 0.42 5.56 16 30 H 0.08 1.27 7.86 -51.93 -0.41 0.86 16 31 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.04 0.73 6.23 -51.93 -0.32 0.41 16 34 H 0.00 -0.14 8.14 -51.93 -0.42 -0.57 16 35 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.04 0.43 5.46 -51.93 -0.28 0.15 16 38 H 0.07 0.88 7.61 -51.93 -0.40 0.48 16 39 H 0.10 1.11 4.07 -51.92 -0.21 0.90 16 40 H 0.08 1.07 7.96 -51.93 -0.41 0.65 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -34.15 348.20 -8.36 -42.51 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.03 Total: 1.17 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.49 Total: -10.55 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.22 Total: -36.01 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.84 Total: -20.01 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.15 -8.36 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339144506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.472 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds