Wall clock time and date at job start Mon Mar 30 2020 05:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46672 * 2 1 4 4 C 1.52992 * 109.47235 * 120.00677 * 2 1 3 5 5 O 1.42902 * 109.47013 * 184.14254 * 4 2 1 6 6 N 1.46905 * 109.46664 * 240.00807 * 2 1 3 7 7 C 1.46898 * 111.00029 * 97.87330 * 6 2 1 8 8 C 1.53005 * 109.47068 * 66.04224 * 7 6 2 9 9 O 1.42895 * 109.47077 * 65.00283 * 8 7 6 10 10 C 1.42898 * 114.00007 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47179 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99781 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99812 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00414 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99627 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47325 * 59.99893 * 15 13 11 17 17 H 1.48509 * 109.46939 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47410 * 299.99438 * 15 13 11 19 19 C 1.46896 * 110.99993 * 333.91746 * 6 2 1 20 20 C 1.53004 * 109.47300 * 287.93157 * 19 6 2 21 21 C 1.53770 * 113.61929 * 277.49220 * 20 19 6 22 22 C 1.53946 * 87.02316 * 220.04500 * 21 20 19 23 23 C 1.53775 * 113.61393 * 179.87828 * 20 19 6 24 24 H 1.09000 * 109.46864 * 299.99348 * 1 2 3 25 25 H 1.09000 * 109.47557 * 59.99106 * 1 2 3 26 26 H 1.09004 * 109.47268 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47314 * 304.14112 * 4 2 1 28 28 H 1.08997 * 109.47243 * 64.14282 * 4 2 1 29 29 H 0.96700 * 113.99592 * 180.02562 * 5 4 2 30 30 H 1.08997 * 109.47515 * 186.04362 * 7 6 2 31 31 H 1.09000 * 109.47301 * 306.04581 * 7 6 2 32 32 H 1.09007 * 109.46918 * 184.99952 * 8 7 6 33 33 H 1.08996 * 109.47091 * 304.99598 * 8 7 6 34 34 H 1.09004 * 109.47028 * 299.99549 * 10 9 8 35 35 H 1.08997 * 109.47226 * 59.99478 * 10 9 8 36 36 H 0.96996 * 120.00547 * 180.02562 * 14 13 11 37 37 H 1.08995 * 109.47590 * 47.93888 * 19 6 2 38 38 H 1.09004 * 109.46932 * 167.93540 * 19 6 2 39 39 H 1.09008 * 112.84137 * 48.68923 * 20 19 6 40 40 H 1.09006 * 113.61309 * 334.56742 * 21 20 19 41 41 H 1.09000 * 113.61713 * 105.46705 * 21 20 19 42 42 H 1.09002 * 113.53939 * 270.81511 * 22 21 20 43 43 H 1.09001 * 113.66914 * 139.92554 * 22 21 20 44 44 H 1.08999 * 113.61585 * 254.52873 * 23 20 19 45 45 H 1.09000 * 113.61908 * 25.35592 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 8 3.4657 -0.6376 1.2987 6 7 2.0196 -0.6924 -1.1996 7 6 2.3721 0.2674 -2.2543 8 6 3.5706 1.1044 -1.8024 9 8 4.7150 0.2603 -1.6615 10 6 5.8953 0.9469 -1.2402 11 6 7.0331 -0.0344 -1.1246 12 1 6.8710 -1.0781 -1.3499 13 6 8.2808 0.4001 -0.7302 14 7 8.4781 1.6709 -0.4553 15 14 9.6910 -0.8165 -0.5862 16 1 9.9332 -1.4522 -1.9063 17 1 10.9176 -0.1029 -0.1485 18 1 9.3436 -1.8614 0.4101 19 6 1.0337 -1.6679 -1.6836 20 6 0.9873 -2.8627 -0.7290 21 6 2.0926 -3.9003 -0.9866 22 6 1.0305 -4.9808 -0.7136 23 6 -0.0214 -3.9458 -1.1463 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6174 -0.2523 2.1376 28 1 1.7386 -1.7682 1.2126 29 1 3.8588 -1.0750 2.0663 30 1 2.6290 -0.2724 -3.1658 31 1 1.5232 0.9232 -2.4474 32 1 3.7767 1.8748 -2.5456 33 1 3.3454 1.5741 -0.8450 34 1 6.1497 1.7143 -1.9713 35 1 5.7180 1.4131 -0.2710 36 1 9.3559 1.9767 -0.1782 37 1 0.0505 -1.1996 -1.7276 38 1 1.3185 -2.0090 -2.6790 39 1 0.9020 -2.5660 0.3165 40 1 2.4614 -3.8999 -2.0124 41 1 2.8936 -3.8776 -0.2478 42 1 0.9579 -5.2644 0.3364 43 1 1.0984 -5.8397 -1.3813 44 1 -0.9244 -3.9598 -0.5361 45 1 -0.2328 -3.9569 -2.2156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339144506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:07 Heat of formation + Delta-G solvation = -86.540401 kcal Electronic energy + Delta-G solvation = -22499.922630 eV Core-core repulsion = 19324.843320 eV Total energy + Delta-G solvation = -3175.079310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79336 -38.84389 -37.97631 -36.75024 -34.86691 -32.62303 -30.89149 -29.18217 -27.51370 -26.97635 -26.28053 -24.41219 -23.52077 -23.05972 -20.64154 -20.10367 -18.54446 -18.10705 -17.52242 -17.28233 -16.78258 -16.30665 -16.19850 -15.93462 -15.37503 -14.95249 -14.88677 -14.71157 -14.13461 -13.69832 -13.53932 -13.24299 -13.13404 -13.10599 -12.99163 -12.80008 -12.74323 -12.58148 -12.41957 -12.07639 -12.02440 -11.74032 -11.54177 -11.33658 -11.20506 -10.99749 -10.93546 -10.78756 -10.39349 -10.04962 -8.91029 -8.26502 -6.37423 1.39599 1.45430 1.53602 2.38189 2.90275 3.06629 3.34180 3.49604 3.80625 3.89840 3.93020 4.08155 4.10391 4.15790 4.28882 4.38887 4.43114 4.55140 4.55599 4.59912 4.66163 4.68957 4.75703 4.81664 4.89452 4.93159 4.94814 4.96824 5.01060 5.05057 5.14821 5.16136 5.27002 5.28008 5.33225 5.49637 5.60215 5.73297 6.04977 6.27605 6.40104 6.64646 6.95400 7.12220 7.34435 8.86129 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019028 B = 0.005000 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.150175 B = 5598.176531 C = 6213.674270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.072 3.928 3 H 0.058 0.942 4 C 0.079 3.921 5 O -0.577 6.577 6 N -0.530 5.530 7 C 0.072 3.928 8 C 0.063 3.937 9 O -0.383 6.383 10 C 0.218 3.782 11 C -0.535 4.535 12 H 0.056 0.944 13 C 0.006 3.994 14 N -0.934 5.934 15 Si 0.982 3.018 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.266 1.266 19 C 0.058 3.942 20 C -0.109 4.109 21 C -0.135 4.135 22 C -0.138 4.138 23 C -0.124 4.124 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.378 0.622 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.029 0.971 34 H -0.025 1.025 35 H -0.025 1.025 36 H 0.269 0.731 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.995 -8.492 1.421 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.036 4.036 3 H 0.076 0.924 4 C 0.001 3.999 5 O -0.382 6.382 6 N -0.254 5.254 7 C -0.056 4.056 8 C -0.014 4.014 9 O -0.302 6.302 10 C 0.143 3.857 11 C -0.573 4.573 12 H 0.074 0.926 13 C -0.192 4.192 14 N -0.574 5.574 15 Si 0.805 3.195 16 H -0.191 1.191 17 H -0.199 1.199 18 H -0.191 1.191 19 C -0.069 4.069 20 C -0.127 4.127 21 C -0.173 4.173 22 C -0.176 4.176 23 C -0.162 4.162 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.225 0.775 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.047 0.953 34 H -0.008 1.008 35 H -0.007 1.007 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.538 -8.477 0.992 22.241 hybrid contribution 0.583 0.506 0.482 0.910 sum -19.955 -7.971 1.474 21.539 Atomic orbital electron populations 1.22331 0.93632 1.03729 1.03031 1.21800 0.94262 0.97053 0.90528 0.92412 1.22598 0.81356 0.99719 0.96239 1.86805 1.20610 1.80252 1.50508 1.61867 1.42436 1.16235 1.04885 1.22009 0.94520 0.94413 0.94685 1.22542 0.87698 0.93071 0.98115 1.87909 1.18184 1.35705 1.88433 1.19639 0.82927 0.92036 0.91100 1.21278 0.94442 0.95218 1.46356 0.92552 1.25937 1.01406 0.97644 0.94225 1.70079 1.24378 1.16237 1.46688 0.85261 0.76925 0.78207 0.79127 1.19093 1.19865 1.19111 1.22355 0.94189 0.92542 0.97807 1.22806 0.96812 0.93114 0.99969 1.22832 0.96660 0.97057 1.00703 1.22854 0.96202 0.96792 1.01713 1.22878 0.96807 0.94680 1.01823 0.90843 0.91621 0.90094 0.93012 0.92184 0.77477 0.90706 0.91656 0.94497 0.95265 1.00762 1.00724 0.92226 0.91968 0.91955 0.88515 0.91684 0.93941 0.89895 0.91192 0.90159 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 7.77 71.98 0.56 -2.48 16 2 C 0.07 1.96 2.30 44.91 0.10 2.06 16 3 H 0.06 1.84 5.84 -2.39 -0.01 1.82 16 4 C 0.08 2.15 6.43 71.98 0.46 2.62 16 5 O -0.58 -21.55 13.59 -148.98 -2.03 -23.58 16 6 N -0.53 -16.09 4.23 -870.99 -3.69 -19.78 16 7 C 0.07 2.28 5.26 86.31 0.45 2.73 16 8 C 0.06 2.63 5.99 71.98 0.43 3.07 16 9 O -0.38 -20.63 10.27 -148.98 -1.53 -22.16 16 10 C 0.22 13.35 5.69 71.24 0.41 13.75 16 11 C -0.54 -33.98 9.43 25.60 0.24 -33.74 16 12 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 13 C 0.01 0.34 5.46 84.65 0.46 0.80 16 14 N -0.93 -58.85 13.29 21.45 0.28 -58.57 16 15 Si 0.98 46.55 29.54 68.60 2.03 48.58 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 C 0.06 1.34 4.27 86.31 0.37 1.71 16 20 C -0.11 -2.30 2.54 -10.27 -0.03 -2.33 16 21 C -0.13 -3.39 7.65 31.17 0.24 -3.15 16 22 C -0.14 -2.51 8.09 31.18 0.25 -2.26 16 23 C -0.12 -1.97 7.65 31.12 0.24 -1.73 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.10 7.69 -2.39 -0.02 1.08 16 26 H 0.08 1.28 5.17 -2.39 -0.01 1.27 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.49 4.78 -2.39 -0.01 1.48 16 29 H 0.38 11.19 9.12 -74.06 -0.68 10.51 16 30 H 0.07 2.41 7.86 -2.39 -0.02 2.39 16 31 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 32 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.03 1.25 6.23 -2.39 -0.01 1.24 16 34 H -0.03 -1.60 8.14 -2.38 -0.02 -1.62 16 35 H -0.02 -1.63 8.14 -2.39 -0.02 -1.65 16 36 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 37 H 0.06 1.16 5.46 -2.39 -0.01 1.15 16 38 H 0.06 1.51 7.61 -2.38 -0.02 1.50 16 39 H 0.10 2.04 4.07 -2.38 -0.01 2.03 16 40 H 0.06 1.79 7.96 -2.38 -0.02 1.77 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -75.68 348.20 -0.45 -76.13 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.29 Total: 18.33 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 4.19 Total: -18.95 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -3.40 Total: -78.35 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -3.56 Total: -45.74 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.68 -0.45 -76.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339144506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.408 kcal (2) G-P(sol) polarization free energy of solvation -75.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds