Wall clock time and date at job start Mon Mar 30 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99899 * 2 1 4 4 C 1.52994 * 109.47105 * 184.93157 * 3 2 1 5 5 N 1.46906 * 109.47143 * 67.12543 * 4 3 2 6 6 C 1.46905 * 110.99964 * 286.40691 * 5 4 3 7 7 C 1.50693 * 109.47185 * 301.54338 * 6 5 4 8 8 H 1.08010 * 120.00141 * 4.64361 * 7 6 5 9 9 C 1.37880 * 120.00124 * 184.64708 * 7 6 5 10 10 N 1.31513 * 119.99704 * 5.03527 * 9 7 6 11 11 Si 1.86798 * 119.99992 * 185.04157 * 9 7 6 12 12 H 1.48503 * 109.47449 * 94.99464 * 11 9 7 13 13 H 1.48505 * 109.47143 * 214.99539 * 11 9 7 14 14 H 1.48502 * 109.47302 * 334.99272 * 11 9 7 15 15 C 1.46906 * 111.00120 * 162.45457 * 5 4 3 16 16 C 1.52996 * 109.47158 * 196.15690 * 15 5 4 17 17 H 1.08998 * 109.46999 * 302.66592 * 16 15 5 18 18 C 1.52997 * 109.47240 * 182.66111 * 16 15 5 19 19 C 1.52996 * 109.47240 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.46808 * 60.00327 * 19 18 16 21 21 C 1.52994 * 109.47141 * 299.99527 * 20 19 18 22 22 H 1.09005 * 109.47342 * 180.02562 * 21 20 19 23 23 O 1.42903 * 109.47285 * 300.00300 * 21 20 19 24 24 C 1.53000 * 109.46808 * 62.66438 * 16 15 5 25 25 H 1.09001 * 109.46789 * 184.97627 * 1 2 3 26 26 H 1.08996 * 109.47637 * 304.97787 * 1 2 3 27 27 H 1.09002 * 109.46947 * 64.98005 * 1 2 3 28 28 H 1.08997 * 109.47162 * 64.93005 * 3 2 1 29 29 H 1.09007 * 109.46735 * 304.93086 * 3 2 1 30 30 H 1.08997 * 109.47626 * 307.12742 * 4 3 2 31 31 H 1.09003 * 109.47383 * 187.12133 * 4 3 2 32 32 H 1.09005 * 109.46729 * 61.54175 * 6 5 4 33 33 H 1.09000 * 109.47001 * 181.53725 * 6 5 4 34 34 H 0.97005 * 119.99682 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.46836 * 76.15960 * 15 5 4 36 36 H 1.08999 * 109.47083 * 316.16187 * 15 5 4 37 37 H 1.09005 * 109.46885 * 300.00336 * 18 16 15 38 38 H 1.09005 * 109.47154 * 60.00060 * 18 16 15 39 39 H 1.09001 * 109.47168 * 179.97438 * 19 18 16 40 40 H 1.08993 * 109.47664 * 300.00309 * 19 18 16 41 41 H 1.09008 * 109.47040 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.47659 * 60.00062 * 20 19 18 43 43 H 0.96693 * 114.00131 * 299.99860 * 23 21 20 44 44 H 1.08993 * 109.47736 * 59.99808 * 24 16 15 45 45 H 1.08998 * 109.47233 * 299.99318 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5305 1.1869 -0.1240 5 7 3.8738 0.6571 -1.4505 6 6 3.5636 -0.7760 -1.5415 7 6 4.3247 -1.5232 -0.4770 8 1 4.9150 -0.9804 0.2466 9 6 4.2677 -2.8999 -0.4267 10 7 3.6311 -3.5664 -1.3648 11 14 5.0946 -3.8184 0.9741 12 1 4.0999 -4.0918 2.0422 13 1 5.6435 -5.1023 0.4684 14 1 6.1980 -2.9913 1.5252 15 6 5.2849 0.9116 -1.7701 16 6 5.5097 0.7237 -3.2717 17 1 5.2073 -0.2827 -3.5612 18 6 6.9918 0.9237 -3.5945 19 6 7.2166 0.7351 -5.0961 20 6 6.3836 1.7596 -5.8690 21 6 4.9015 1.5596 -5.5463 22 1 4.3080 2.2891 -6.0974 23 8 4.5053 0.2399 -5.9254 24 6 4.6767 1.7485 -4.0442 25 1 -0.3633 -1.0238 0.0891 26 1 -0.3634 0.5891 0.8420 27 1 -0.3633 0.4346 -0.9313 28 1 1.7602 1.8145 0.9308 29 1 1.6204 1.8767 -0.8426 30 1 3.9063 0.5120 0.6450 31 1 3.9833 2.1703 0.0027 32 1 2.4937 -0.9260 -1.3962 33 1 3.8526 -1.1486 -2.5242 34 1 3.5907 -4.5349 -1.3292 35 1 5.9140 0.2131 -1.2183 36 1 5.5426 1.9327 -1.4890 37 1 7.2941 1.9301 -3.3050 38 1 7.5853 0.1936 -3.0441 39 1 8.2725 0.8781 -5.3261 40 1 6.9145 -0.2714 -5.3852 41 1 6.5435 1.6250 -6.9389 42 1 6.6858 2.7662 -5.5800 43 1 4.6206 0.0497 -6.8664 44 1 4.9789 2.7549 -3.7547 45 1 3.6208 1.6060 -3.8143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380110542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:08 Heat of formation + Delta-G solvation = -107.327022 kcal Electronic energy + Delta-G solvation = -22787.389969 eV Core-core repulsion = 19611.409283 eV Total energy + Delta-G solvation = -3175.980686 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.03012 -37.59118 -36.06608 -34.53124 -32.26697 -31.11644 -29.50980 -28.74499 -26.62579 -25.56713 -24.11064 -22.62218 -22.09398 -20.83475 -19.51218 -18.99642 -16.50736 -16.34125 -15.82156 -15.52511 -15.22207 -14.61453 -14.49147 -14.15383 -13.99063 -13.85852 -13.39984 -12.64159 -12.51171 -12.30415 -12.08123 -11.91395 -11.63195 -11.46418 -11.14484 -11.00649 -10.89743 -10.79538 -10.63217 -10.57243 -10.42669 -10.24897 -10.03701 -9.71497 -9.67097 -9.43168 -9.33388 -9.19753 -8.81622 -8.10025 -6.93829 -5.79086 -3.82579 3.39229 3.45724 3.47724 4.56240 4.58700 4.58949 4.95849 5.01809 5.13847 5.21293 5.51970 5.59269 5.63513 5.69000 5.74287 5.82557 5.85493 5.91488 5.91881 5.96855 6.01077 6.11349 6.12603 6.20117 6.21903 6.33401 6.37490 6.45632 6.54642 6.58205 6.66401 6.84833 6.95469 7.03505 7.25972 7.59758 7.86516 7.96496 7.99806 8.25790 8.32851 8.55140 8.62037 9.26363 9.79166 11.26611 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.014418 B = 0.006734 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.502637 B = 4157.174514 C = 5164.227514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.073 3.927 4 C 0.055 3.945 5 N -0.537 5.537 6 C 0.181 3.819 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.065 3.935 10 N -0.890 5.890 11 Si 0.880 3.120 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.278 1.278 15 C 0.064 3.936 16 C -0.073 4.073 17 H 0.088 0.912 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.149 4.149 21 C 0.103 3.897 22 H 0.043 0.957 23 O -0.552 6.552 24 C -0.094 4.094 25 H 0.078 0.922 26 H 0.027 0.973 27 H 0.032 0.968 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.257 0.743 35 H 0.044 0.956 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.366 0.634 44 H 0.060 0.940 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.425 12.214 -5.910 13.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C -0.004 4.004 4 C -0.074 4.074 5 N -0.260 5.260 6 C 0.056 3.944 7 C -0.568 4.568 8 H 0.068 0.932 9 C -0.136 4.136 10 N -0.530 5.530 11 Si 0.709 3.291 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.064 4.064 16 C -0.092 4.092 17 H 0.106 0.894 18 C -0.150 4.150 19 C -0.150 4.150 20 C -0.187 4.187 21 C 0.044 3.956 22 H 0.061 0.939 23 O -0.356 6.356 24 C -0.132 4.132 25 H 0.097 0.903 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.211 0.789 44 H 0.079 0.921 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.060 12.078 -5.665 13.383 hybrid contribution 0.933 -0.740 0.844 1.459 sum 1.992 11.338 -4.821 12.481 Atomic orbital electron populations 1.22633 0.83476 1.01937 0.98560 1.88334 1.17425 1.26635 1.94715 1.22471 0.94810 0.85185 0.97961 1.22008 0.93091 0.98533 0.93786 1.62576 1.17768 1.20641 1.25050 1.20011 0.98179 0.79982 0.96257 1.21654 1.29128 0.91785 1.14261 0.93195 1.24858 0.95624 0.97661 0.95471 1.69965 1.43443 1.07005 1.32566 0.86786 0.79554 0.79500 0.83290 1.20942 1.21503 1.20306 1.21962 0.91068 0.98301 0.95085 1.20985 0.92673 1.00967 0.94575 0.89363 1.21545 0.97501 1.00754 0.95246 1.21405 0.98122 0.99753 0.95729 1.22243 0.97006 1.00021 0.99440 1.21870 0.92511 0.84033 0.97181 0.93877 1.86712 1.87945 1.31822 1.29124 1.21452 1.02536 0.98309 0.90859 0.90296 0.95458 0.94904 0.94832 0.93784 0.92503 0.92265 0.92637 0.95031 0.93319 0.93803 0.93923 0.92999 0.92148 0.92976 0.91303 0.92638 0.91621 0.78901 0.92149 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.53 7.78 -35.23 -0.27 -7.81 16 3 C 0.07 1.33 6.23 37.15 0.23 1.56 16 4 C 0.05 1.08 5.35 -3.82 -0.02 1.06 16 5 N -0.54 -11.58 3.96 -236.06 -0.94 -12.51 16 6 C 0.18 4.78 4.63 -4.98 -0.02 4.76 16 7 C -0.53 -14.97 7.24 -34.44 -0.25 -15.22 16 8 H 0.05 1.41 6.03 -52.48 -0.32 1.10 16 9 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 10 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 11 Si 0.88 22.38 29.54 -169.99 -5.02 17.36 16 12 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 15 C 0.06 1.27 4.26 -3.82 -0.02 1.25 16 16 C -0.07 -1.33 2.04 -90.62 -0.18 -1.51 16 17 H 0.09 1.99 6.12 -51.93 -0.32 1.67 16 18 C -0.11 -1.72 5.20 -26.73 -0.14 -1.86 16 19 C -0.11 -1.52 5.78 -26.73 -0.15 -1.67 16 20 C -0.15 -1.76 5.64 -26.73 -0.15 -1.91 16 21 C 0.10 1.41 3.77 -26.70 -0.10 1.31 16 22 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 23 O -0.55 -8.55 11.97 -35.23 -0.42 -8.97 16 24 C -0.09 -1.50 4.82 -26.70 -0.13 -1.63 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.06 1.28 5.95 -51.93 -0.31 0.97 16 31 H 0.06 0.99 7.69 -51.93 -0.40 0.60 16 32 H 0.06 1.60 5.51 -51.93 -0.29 1.31 16 33 H 0.03 0.93 6.48 -51.93 -0.34 0.59 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.04 0.98 6.67 -51.93 -0.35 0.63 16 36 H 0.04 0.74 7.70 -51.93 -0.40 0.34 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 41 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.37 3.93 9.08 45.56 0.41 4.34 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.08 1.50 7.68 -51.93 -0.40 1.10 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -32.15 341.89 -7.99 -40.14 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -7.30 Total: 3.56 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: -0.20 Total: -38.99 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.70 Total: -16.78 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.15 -7.99 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380110542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.188 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds